Wall clock time and date at job start Mon Mar 30 2020 03:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86801 * 119.99988 * 2 1 4 4 H 1.48503 * 109.47524 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47167 * 300.00610 * 3 2 1 6 6 H 1.48503 * 109.46972 * 60.00193 * 3 2 1 7 7 C 1.39885 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00297 * 197.93178 * 7 2 1 9 9 C 1.41217 * 120.00135 * 17.92264 * 7 2 1 10 10 C 1.40845 * 120.17487 * 24.56315 * 9 7 2 11 11 C 1.36421 * 119.80985 * 179.97438 * 10 9 7 12 12 C 1.39329 * 120.18559 * 0.02562 * 11 10 9 13 13 O 1.35673 * 119.81728 * 179.97438 * 12 11 10 14 14 C 1.39299 * 120.36378 * 359.68718 * 12 11 10 15 15 C 1.50699 * 119.90658 * 180.32109 * 14 12 11 16 16 H 1.08995 * 110.21477 * 323.34383 * 15 14 12 17 17 C 1.54478 * 110.24450 * 85.27330 * 15 14 12 18 18 C 1.54627 * 101.76500 * 144.41350 * 17 15 14 19 19 C 1.51286 * 104.19684 * 335.20205 * 18 17 15 20 20 O 1.21278 * 124.94591 * 196.25097 * 19 18 17 21 21 N 1.34420 * 110.11455 * 16.24964 * 19 18 17 22 22 C 1.36450 * 120.18020 * 0.59486 * 14 12 11 23 23 H 0.97009 * 120.00295 * 359.97438 * 1 2 3 24 24 H 1.08002 * 120.09918 * 359.97438 * 10 9 7 25 25 H 1.08004 * 119.90729 * 180.02562 * 11 10 9 26 26 H 0.96710 * 113.99654 * 90.00396 * 13 12 11 27 27 H 1.08998 * 110.96866 * 262.52926 * 17 15 14 28 28 H 1.09002 * 110.97122 * 26.25776 * 17 15 14 29 29 H 1.08998 * 110.49025 * 93.88083 * 18 17 15 30 30 H 1.09001 * 110.49161 * 216.39130 * 18 17 15 31 31 H 0.97000 * 124.35036 * 180.42457 * 21 19 18 32 32 H 1.08001 * 120.08896 * 179.70114 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3465 -0.0006 5 1 1.8839 2.3965 -1.2124 6 1 1.8840 2.3964 1.2126 7 6 2.0082 -1.2114 -0.0005 8 1 3.0489 -1.2343 0.2874 9 6 1.3536 -2.4046 -0.3774 10 6 0.2245 -2.3575 -1.2181 11 6 -0.4019 -3.5147 -1.5779 12 6 0.0721 -4.7408 -1.1158 13 8 -0.5569 -5.8871 -1.4779 14 6 1.1917 -4.7965 -0.2889 15 6 1.6998 -6.1287 0.1990 16 1 0.8646 -6.7986 0.4029 17 6 2.6453 -6.7566 -0.8489 18 6 3.6895 -7.4593 0.0494 19 6 3.6370 -6.6899 1.3509 20 8 4.4830 -6.7343 2.2188 21 7 2.5162 -5.9499 1.4056 22 6 1.8262 -3.6478 0.0849 23 1 -0.4851 0.8401 0.0004 24 1 -0.1444 -1.4079 -1.5768 25 1 -1.2676 -3.4805 -2.2228 26 1 -0.2147 -6.2835 -2.2910 27 1 2.1152 -7.4792 -1.4693 28 1 3.1131 -5.9871 -1.4631 29 1 3.4141 -8.5015 0.2110 30 1 4.6822 -7.3927 -0.3956 31 1 2.2776 -5.3717 2.1470 32 1 2.6913 -3.6924 0.7300 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687771934.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:33 Heat of formation + Delta-G solvation = -88.701536 kcal Electronic energy + Delta-G solvation = -17559.489302 eV Core-core repulsion = 14676.411290 eV Total energy + Delta-G solvation = -2883.078012 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.51475 -39.91564 -37.46578 -37.45329 -35.09013 -32.24588 -31.89946 -31.12770 -27.67175 -26.60097 -23.46826 -22.79321 -21.81276 -21.29956 -19.23989 -18.82649 -18.02766 -17.46450 -16.96610 -16.19593 -15.92272 -15.72346 -15.27166 -14.71034 -14.54628 -14.20689 -13.98314 -13.57393 -13.47719 -13.29386 -13.03280 -12.80701 -12.60872 -12.33736 -11.94751 -11.86825 -11.60605 -11.13524 -10.94607 -10.76868 -10.13621 -9.42498 -9.10558 -8.70300 -6.35775 0.81149 1.00362 1.36160 1.43850 1.50630 1.58709 2.17350 2.46009 2.62436 3.46011 3.55799 3.69618 3.89662 3.94939 4.25275 4.38599 4.40879 4.67407 4.86012 4.99398 5.05544 5.08088 5.15062 5.29674 5.34488 5.60254 5.73292 5.83886 6.02553 6.07594 6.07727 6.28253 6.58230 6.87079 6.88177 7.23152 7.34800 8.26734 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.023437 B = 0.007035 C = 0.005680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.383736 B = 3979.084526 C = 4928.062492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.037 3.963 3 Si 0.978 3.022 4 H -0.261 1.261 5 H -0.261 1.261 6 H -0.267 1.267 7 C -0.496 4.496 8 H 0.071 0.929 9 C 0.077 3.923 10 C -0.176 4.176 11 C -0.124 4.124 12 C -0.013 4.013 13 O -0.498 6.498 14 C -0.085 4.085 15 C 0.181 3.819 16 H 0.101 0.899 17 C -0.112 4.112 18 C -0.142 4.142 19 C 0.507 3.493 20 O -0.595 6.595 21 N -0.719 5.719 22 C -0.214 4.214 23 H 0.289 0.711 24 H 0.103 0.897 25 H 0.112 0.888 26 H 0.385 0.615 27 H 0.127 0.873 28 H 0.074 0.926 29 H 0.132 0.868 30 H 0.112 0.888 31 H 0.405 0.595 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.505 -9.233 -5.155 10.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.178 4.178 3 Si 0.799 3.201 4 H -0.184 1.184 5 H -0.186 1.186 6 H -0.192 1.192 7 C -0.525 4.525 8 H 0.090 0.910 9 C 0.074 3.926 10 C -0.195 4.195 11 C -0.143 4.143 12 C -0.059 4.059 13 O -0.308 6.308 14 C -0.087 4.087 15 C 0.076 3.924 16 H 0.119 0.881 17 C -0.149 4.149 18 C -0.181 4.181 19 C 0.295 3.705 20 O -0.477 6.477 21 N -0.371 5.371 22 C -0.234 4.234 23 H 0.100 0.900 24 H 0.121 0.879 25 H 0.130 0.870 26 H 0.239 0.761 27 H 0.146 0.854 28 H 0.093 0.907 29 H 0.150 0.850 30 H 0.131 0.869 31 H 0.242 0.758 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.414 -9.087 -4.290 10.148 hybrid contribution 0.209 1.513 0.195 1.539 sum 1.623 -7.575 -4.096 8.763 Atomic orbital electron populations 1.69884 1.08899 1.30650 1.35340 1.26707 0.95455 1.04438 0.91202 0.85215 0.79376 0.76424 0.79080 1.18437 1.18551 1.19156 1.19799 0.98285 0.92721 1.41667 0.91035 1.17959 0.92033 0.93082 0.89492 1.20943 0.99758 0.97106 1.01718 1.20958 0.99713 0.92756 1.00855 1.17692 0.96602 0.85133 1.06437 1.84733 1.61275 1.37549 1.47204 1.19650 0.94860 0.94532 0.99617 1.20535 0.93862 0.93611 0.84355 0.88125 1.22688 0.95410 1.00405 0.96435 1.22383 1.02868 1.01343 0.91541 1.21672 0.79899 0.79472 0.89427 1.90687 1.42802 1.68137 1.46097 1.46546 1.22724 1.46044 1.21786 1.20504 1.03778 0.92255 1.06887 0.89984 0.87928 0.87046 0.76061 0.85433 0.90748 0.84972 0.86929 0.75773 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.21 10.96 21.82 0.24 -41.97 16 2 C 0.04 1.85 5.13 85.23 0.44 2.29 16 3 Si 0.98 37.81 29.60 68.60 2.03 39.85 16 4 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 5 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 6 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 7 C -0.50 -26.27 9.04 23.40 0.21 -26.06 16 8 H 0.07 3.73 7.91 -2.91 -0.02 3.71 16 9 C 0.08 3.97 5.57 -21.28 -0.12 3.86 16 10 C -0.18 -8.84 8.64 22.48 0.19 -8.64 16 11 C -0.12 -5.41 9.92 22.11 0.22 -5.19 16 12 C -0.01 -0.51 6.70 22.79 0.15 -0.36 16 13 O -0.50 -15.23 12.66 -89.90 -1.14 -16.37 16 14 C -0.09 -3.26 4.98 -20.03 -0.10 -3.36 16 15 C 0.18 5.22 3.42 44.70 0.15 5.37 16 16 H 0.10 2.70 7.77 -2.39 -0.02 2.68 16 17 C -0.11 -2.34 6.67 31.65 0.21 -2.13 16 18 C -0.14 -2.93 6.86 30.59 0.21 -2.72 16 19 C 0.51 16.09 8.43 87.90 0.74 16.84 16 20 O -0.60 -23.92 18.03 -3.02 -0.05 -23.98 16 21 N -0.72 -22.83 4.71 -442.97 -2.09 -24.92 16 22 C -0.21 -9.82 8.94 22.48 0.20 -9.61 16 23 H 0.29 13.38 8.30 -92.70 -0.77 12.61 16 24 H 0.10 5.45 6.16 -2.91 -0.02 5.43 16 25 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 26 H 0.38 7.67 9.06 -74.05 -0.67 7.00 16 27 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.07 1.77 7.90 -2.39 -0.02 1.75 16 29 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.40 13.63 8.62 -92.71 -0.80 12.83 16 32 H 0.09 4.27 7.04 -2.91 -0.02 4.25 16 Total: -1.00 -65.37 276.85 1.20 -64.17 By element: Atomic # 1 Polarization: 33.24 SS G_CDS: -0.30 Total: 32.94 kcal Atomic # 6 Polarization: -32.23 SS G_CDS: 2.51 Total: -29.72 kcal Atomic # 7 Polarization: -65.04 SS G_CDS: -1.85 Total: -66.89 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -1.19 Total: -40.35 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.85 kcal Total: -65.37 1.20 -64.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687771934.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.531 kcal (2) G-P(sol) polarization free energy of solvation -65.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds