Wall clock time and date at job start Mon Mar 30 2020 03:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81397 * 115.55115 * 2 1 4 4 O 1.42105 * 110.54275 * 282.70393 * 3 2 1 5 5 O 1.42101 * 110.54298 * 145.95496 * 3 2 1 6 6 N 1.65599 * 104.44825 * 34.32879 * 3 2 1 7 7 C 1.46497 * 120.00110 * 65.00280 * 6 3 2 8 8 C 1.52997 * 109.47242 * 164.99451 * 7 6 3 9 9 C 1.53001 * 109.46855 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47072 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99634 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00152 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00404 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99939 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47233 * 60.00282 * 14 12 10 16 16 H 1.48502 * 109.47003 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47433 * 300.00301 * 14 12 10 18 18 C 1.52998 * 117.51639 * 145.70233 * 2 1 3 19 19 C 1.53002 * 60.00113 * 107.48035 * 18 2 1 20 20 H 1.09003 * 109.47327 * 85.58484 * 1 2 3 21 21 H 1.09002 * 109.47506 * 205.58427 * 1 2 3 22 22 H 1.08997 * 109.47303 * 325.58521 * 1 2 3 23 23 H 0.96999 * 120.00046 * 244.99555 * 6 3 2 24 24 H 1.09002 * 109.47077 * 285.00304 * 7 6 3 25 25 H 1.09005 * 109.47050 * 44.99641 * 7 6 3 26 26 H 1.08992 * 109.47454 * 299.99944 * 8 7 6 27 27 H 1.09005 * 109.46944 * 60.00124 * 8 7 6 28 28 H 1.09004 * 109.47525 * 300.00026 * 9 8 7 29 29 H 1.08996 * 109.47383 * 60.00187 * 9 8 7 30 30 H 0.96994 * 120.00386 * 179.97438 * 13 12 10 31 31 H 1.09003 * 117.49926 * 214.97009 * 18 2 1 32 32 H 1.08998 * 117.50058 * 359.97438 * 18 2 1 33 33 H 1.09001 * 117.49404 * 252.51166 * 19 18 2 34 34 H 1.08996 * 117.50143 * 107.49240 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.3124 1.6366 0.0000 4 8 2.2634 2.2127 -1.2981 5 8 3.5222 1.6109 0.7450 6 7 1.2958 2.5805 0.9043 7 6 1.1076 2.2977 2.3294 8 6 0.4424 3.4988 3.0043 9 6 0.2453 3.2031 4.4924 10 6 -0.4105 4.3859 5.1571 11 1 -0.6612 5.2613 4.5763 12 6 -0.6904 4.3507 6.5067 13 7 -0.3857 3.2846 7.2139 14 14 -1.5027 5.8173 7.3307 15 1 -2.8212 6.0733 6.6974 16 1 -1.6952 5.5297 8.7748 17 1 -0.6379 7.0144 7.1748 18 6 2.2368 -1.1210 0.7646 19 6 2.2364 -1.1208 -0.7654 20 1 -0.3634 0.0791 -1.0246 21 1 -0.3634 -0.9269 0.4438 22 1 -0.3634 0.8478 0.5808 23 1 0.8251 3.3208 0.4906 24 1 0.4733 1.4187 2.4446 25 1 2.0759 2.1103 2.7936 26 1 1.0767 4.3777 2.8891 27 1 -0.5259 3.6862 2.5401 28 1 -0.3893 2.3243 4.6073 29 1 1.2133 3.0154 4.9569 30 1 -0.5823 3.2600 8.1634 31 1 3.1721 -0.8751 1.2677 32 1 1.6119 -1.8585 1.2682 33 1 1.6111 -1.8583 -1.2685 34 1 3.1713 -0.8748 -1.2689 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696293101.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:58 Heat of formation + Delta-G solvation = -65.862920 kcal Electronic energy + Delta-G solvation = -16230.384728 eV Core-core repulsion = 13483.741024 eV Total energy + Delta-G solvation = -2746.643704 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.103 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -37.94266 -37.04138 -36.03474 -35.87620 -33.24987 -30.88245 -28.89578 -26.36177 -23.01522 -22.87917 -22.26474 -20.51205 -18.89381 -17.38269 -16.94251 -16.50339 -15.83612 -15.04995 -14.69618 -14.48309 -14.33765 -13.61673 -13.45827 -12.75873 -12.52896 -12.31905 -12.20487 -12.05311 -11.87649 -11.82663 -11.53502 -11.32139 -10.90929 -10.74551 -10.62989 -10.57705 -10.40991 -9.90143 -9.45273 -9.21773 -9.08632 -8.37332 -6.02660 -4.05274 0.33004 2.72214 3.03147 3.32283 3.36842 3.39334 3.81068 4.12075 4.30930 4.44115 4.46199 4.71786 5.17807 5.22064 5.33414 5.37040 5.43928 5.48606 5.52010 5.67002 5.69591 5.88415 5.94836 6.12502 6.58176 6.78279 6.96865 7.19733 7.62227 7.75404 7.96215 8.38248 9.01121 9.59018 11.08639 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.041299 B = 0.004624 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.812694 B = 6053.933018 C = 6282.331963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.651 4.651 3 S 2.643 3.357 4 O -0.965 6.965 5 O -0.954 6.954 6 N -1.112 6.112 7 C 0.113 3.887 8 C -0.116 4.116 9 C 0.022 3.978 10 C -0.522 4.522 11 H 0.055 0.945 12 C 0.057 3.943 13 N -0.895 5.895 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.122 4.122 19 C -0.128 4.128 20 H 0.067 0.933 21 H 0.069 0.931 22 H 0.079 0.921 23 H 0.416 0.584 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.018 0.982 29 H 0.020 0.980 30 H 0.261 0.739 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.664 -9.205 -14.670 17.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.739 4.739 3 S 2.733 3.267 4 O -0.955 6.955 5 O -0.944 6.944 6 N -0.873 5.873 7 C -0.012 4.012 8 C -0.155 4.155 9 C -0.016 4.016 10 C -0.561 4.561 11 H 0.073 0.927 12 C -0.144 4.144 13 N -0.534 5.534 14 Si 0.721 3.279 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.160 4.160 19 C -0.167 4.167 20 H 0.086 0.914 21 H 0.088 0.912 22 H 0.097 0.903 23 H 0.251 0.749 24 H 0.079 0.921 25 H 0.094 0.906 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.071 0.929 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.551 -9.171 -14.806 17.774 hybrid contribution -1.305 0.656 0.578 1.571 sum 2.246 -8.515 -14.227 16.732 Atomic orbital electron populations 1.21135 0.87501 1.04157 1.02986 1.32241 1.07969 1.16439 1.17246 1.03919 0.74214 0.75244 0.73286 1.93569 1.86977 1.74730 1.40210 1.93596 1.42549 1.86238 1.72007 1.55467 1.66500 1.45087 1.20204 1.21588 1.01512 1.00216 0.77886 1.21845 0.99023 0.95372 0.99260 1.19072 0.97320 0.97213 0.88019 1.21183 1.39640 1.01537 0.93697 0.92682 1.25013 0.95847 0.96001 0.97519 1.69944 1.47775 1.28222 1.07501 0.86647 0.79929 0.83022 0.78318 1.20276 1.21290 1.20223 1.23043 1.01854 0.96691 0.94402 1.22836 1.00952 0.97463 0.95421 0.91384 0.91216 0.90255 0.74947 0.92087 0.90644 0.92434 0.92649 0.96338 0.96205 0.92900 0.86461 0.86931 0.86957 0.87864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.94 9.83 37.16 0.37 -0.58 16 2 C -0.65 -6.78 2.76 -90.62 -0.25 -7.03 16 3 S 2.64 35.76 5.64 -107.50 -0.61 35.15 16 4 O -0.96 -15.29 18.08 -57.54 -1.04 -16.33 16 5 O -0.95 -15.79 16.79 -57.54 -0.97 -16.76 16 6 N -1.11 -15.10 4.83 -10.61 -0.05 -15.15 16 7 C 0.11 1.78 5.87 -4.04 -0.02 1.76 16 8 C -0.12 -2.22 5.29 -26.73 -0.14 -2.36 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 11 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 14 Si 0.89 21.38 29.54 -169.99 -5.02 16.35 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 C -0.12 -1.12 9.81 -26.73 -0.26 -1.38 16 19 C -0.13 -1.08 10.02 -26.73 -0.27 -1.35 16 20 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 21 H 0.07 0.58 7.90 -51.93 -0.41 0.17 16 22 H 0.08 0.78 5.90 -51.93 -0.31 0.48 16 23 H 0.42 5.07 8.62 -34.47 -0.30 4.78 16 24 H 0.06 0.87 7.28 -51.93 -0.38 0.49 16 25 H 0.08 1.25 7.69 -51.93 -0.40 0.85 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.12 1.12 7.66 -51.93 -0.40 0.72 16 32 H 0.11 0.87 8.05 -51.93 -0.42 0.45 16 33 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 298.75 15.07 4.50 4.50 Total: -1.00 -33.43 298.75 -8.68 -42.11 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -5.11 Total: -0.40 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: -1.13 Total: -23.78 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.69 Total: -40.85 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -2.01 Total: -33.09 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 35.76 SS G_CDS: -0.61 Total: 35.15 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.43 -8.68 -42.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696293101.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.752 kcal (2) G-P(sol) polarization free energy of solvation -33.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds