Wall clock time and date at job start Mon Mar 30 2020 03:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81397 * 115.55115 * 2 1 4 4 O 1.42105 * 110.54275 * 282.70393 * 3 2 1 5 5 O 1.42101 * 110.54298 * 145.95496 * 3 2 1 6 6 N 1.65599 * 104.44825 * 34.32879 * 3 2 1 7 7 C 1.46497 * 120.00110 * 65.00280 * 6 3 2 8 8 C 1.52997 * 109.47242 * 164.99451 * 7 6 3 9 9 C 1.53001 * 109.46855 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47072 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99634 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00152 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00404 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99939 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47233 * 60.00282 * 14 12 10 16 16 H 1.48502 * 109.47003 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47433 * 300.00301 * 14 12 10 18 18 C 1.52998 * 117.51639 * 145.70233 * 2 1 3 19 19 C 1.53002 * 60.00113 * 107.48035 * 18 2 1 20 20 H 1.09003 * 109.47327 * 85.58484 * 1 2 3 21 21 H 1.09002 * 109.47506 * 205.58427 * 1 2 3 22 22 H 1.08997 * 109.47303 * 325.58521 * 1 2 3 23 23 H 0.96999 * 120.00046 * 244.99555 * 6 3 2 24 24 H 1.09002 * 109.47077 * 285.00304 * 7 6 3 25 25 H 1.09005 * 109.47050 * 44.99641 * 7 6 3 26 26 H 1.08992 * 109.47454 * 299.99944 * 8 7 6 27 27 H 1.09005 * 109.46944 * 60.00124 * 8 7 6 28 28 H 1.09004 * 109.47525 * 300.00026 * 9 8 7 29 29 H 1.08996 * 109.47383 * 60.00187 * 9 8 7 30 30 H 0.96994 * 120.00386 * 179.97438 * 13 12 10 31 31 H 1.09003 * 117.49926 * 214.97009 * 18 2 1 32 32 H 1.08998 * 117.50058 * 359.97438 * 18 2 1 33 33 H 1.09001 * 117.49404 * 252.51166 * 19 18 2 34 34 H 1.08996 * 117.50143 * 107.49240 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.3124 1.6366 0.0000 4 8 2.2634 2.2127 -1.2981 5 8 3.5222 1.6109 0.7450 6 7 1.2958 2.5805 0.9043 7 6 1.1076 2.2977 2.3294 8 6 0.4424 3.4988 3.0043 9 6 0.2453 3.2031 4.4924 10 6 -0.4105 4.3859 5.1571 11 1 -0.6612 5.2613 4.5763 12 6 -0.6904 4.3507 6.5067 13 7 -0.3857 3.2846 7.2139 14 14 -1.5027 5.8173 7.3307 15 1 -2.8212 6.0733 6.6974 16 1 -1.6952 5.5297 8.7748 17 1 -0.6379 7.0144 7.1748 18 6 2.2368 -1.1210 0.7646 19 6 2.2364 -1.1208 -0.7654 20 1 -0.3634 0.0791 -1.0246 21 1 -0.3634 -0.9269 0.4438 22 1 -0.3634 0.8478 0.5808 23 1 0.8251 3.3208 0.4906 24 1 0.4733 1.4187 2.4446 25 1 2.0759 2.1103 2.7936 26 1 1.0767 4.3777 2.8891 27 1 -0.5259 3.6862 2.5401 28 1 -0.3893 2.3243 4.6073 29 1 1.2133 3.0154 4.9569 30 1 -0.5823 3.2600 8.1634 31 1 3.1721 -0.8751 1.2677 32 1 1.6119 -1.8585 1.2682 33 1 1.6111 -1.8583 -1.2685 34 1 3.1713 -0.8748 -1.2689 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696293101.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:57 Heat of formation + Delta-G solvation = -89.791204 kcal Electronic energy + Delta-G solvation = -16231.422336 eV Core-core repulsion = 13483.741024 eV Total energy + Delta-G solvation = -2747.681313 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.103 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.72791 -38.19228 -37.40242 -37.09022 -35.16663 -32.64401 -29.63381 -28.15988 -24.74857 -23.57983 -23.17596 -22.15477 -20.01445 -18.54361 -18.45037 -17.85011 -17.13651 -16.48489 -16.10699 -15.91130 -15.45832 -14.52087 -14.36297 -14.25580 -13.98738 -13.76012 -13.38362 -13.23061 -13.20059 -13.15888 -12.73301 -12.54043 -12.51266 -12.32225 -12.11849 -11.67886 -11.40696 -11.35724 -11.26674 -11.12852 -10.51622 -10.34396 -8.17440 -6.27642 -0.72353 1.42650 1.44878 1.52658 1.68591 2.20561 2.43554 2.80798 3.16399 3.23931 3.50949 3.73761 3.81606 4.06392 4.29026 4.47108 4.55247 4.59337 4.70230 4.77650 4.80076 4.87115 5.00653 5.05131 5.19527 5.21864 5.27027 5.55823 5.77805 5.88541 6.09658 6.27853 6.89051 7.41359 8.94056 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.041299 B = 0.004624 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.812694 B = 6053.933018 C = 6282.331963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.649 4.649 3 S 2.647 3.353 4 O -0.991 6.991 5 O -0.992 6.992 6 N -1.110 6.110 7 C 0.124 3.876 8 C -0.105 4.105 9 C 0.022 3.978 10 C -0.544 4.544 11 H 0.060 0.940 12 C 0.002 3.998 13 N -0.932 5.932 14 Si 0.962 3.038 15 H -0.266 1.266 16 H -0.284 1.284 17 H -0.270 1.270 18 C -0.124 4.124 19 C -0.117 4.117 20 H 0.078 0.922 21 H 0.085 0.915 22 H 0.072 0.928 23 H 0.422 0.578 24 H 0.081 0.919 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.004 0.996 29 H -0.007 1.007 30 H 0.263 0.737 31 H 0.109 0.891 32 H 0.132 0.868 33 H 0.138 0.862 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.624 -9.741 -15.554 18.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.742 4.742 3 S 2.743 3.257 4 O -0.981 6.981 5 O -0.982 6.982 6 N -0.870 5.870 7 C -0.002 4.002 8 C -0.144 4.144 9 C -0.016 4.016 10 C -0.582 4.582 11 H 0.078 0.922 12 C -0.196 4.196 13 N -0.572 5.572 14 Si 0.786 3.214 15 H -0.191 1.191 16 H -0.209 1.209 17 H -0.195 1.195 18 C -0.162 4.162 19 C -0.156 4.156 20 H 0.097 0.903 21 H 0.104 0.896 22 H 0.091 0.909 23 H 0.258 0.742 24 H 0.099 0.901 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.022 0.978 29 H 0.012 0.988 30 H 0.072 0.928 31 H 0.127 0.873 32 H 0.150 0.850 33 H 0.157 0.843 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.528 -9.646 -15.709 18.607 hybrid contribution -0.964 0.744 0.824 1.470 sum 1.564 -8.902 -14.885 17.414 Atomic orbital electron populations 1.21226 0.86348 1.04712 1.03823 1.31879 1.08566 1.13815 1.19918 1.03546 0.73644 0.76300 0.72243 1.93532 1.87287 1.76276 1.41007 1.93548 1.44917 1.87234 1.72498 1.55257 1.66454 1.46124 1.19193 1.21322 1.00901 0.99322 0.78651 1.21619 1.00080 0.96651 0.96047 1.18984 0.95258 0.95903 0.91416 1.21672 1.39644 1.02510 0.94372 0.92192 1.25920 0.96478 0.98898 0.98344 1.70071 1.48975 1.30317 1.07829 0.85555 0.79224 0.79381 0.77195 1.19107 1.20948 1.19532 1.23222 1.01623 0.96056 0.95331 1.23142 1.01191 0.96129 0.95115 0.90324 0.89598 0.90940 0.74202 0.90131 0.91839 0.92890 0.91311 0.97769 0.98826 0.92798 0.87298 0.84982 0.84344 0.87272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.66 9.83 71.98 0.71 -0.96 16 2 C -0.65 -12.16 2.76 -10.79 -0.03 -12.19 16 3 S 2.65 70.32 5.64 -56.49 -0.32 70.00 16 4 O -0.99 -30.99 18.08 -127.65 -2.31 -33.30 16 5 O -0.99 -33.18 16.79 -127.65 -2.14 -35.33 16 6 N -1.11 -29.46 4.83 -187.49 -0.90 -30.37 16 7 C 0.12 3.85 5.87 86.38 0.51 4.36 16 8 C -0.10 -4.00 5.29 30.59 0.16 -3.84 16 9 C 0.02 1.12 4.97 29.85 0.15 1.27 16 10 C -0.54 -30.21 9.11 25.60 0.23 -29.98 16 11 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 12 C 0.00 0.09 5.46 84.65 0.46 0.55 16 13 N -0.93 -55.67 13.29 21.45 0.28 -55.38 16 14 Si 0.96 43.62 29.54 68.60 2.03 45.65 16 15 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 18 C -0.12 -2.00 9.81 30.59 0.30 -1.69 16 19 C -0.12 -1.63 10.02 30.60 0.31 -1.32 16 20 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 21 H 0.09 1.14 7.90 -2.39 -0.02 1.12 16 22 H 0.07 1.27 5.90 -2.39 -0.01 1.26 16 23 H 0.42 9.99 8.62 -96.75 -0.83 9.16 16 24 H 0.08 2.20 7.28 -2.39 -0.02 2.18 16 25 H 0.06 2.13 7.69 -2.38 -0.02 2.11 16 26 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 28 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 29 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 30 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 31 H 0.11 1.96 7.66 -2.39 -0.02 1.94 16 32 H 0.13 1.62 8.05 -2.39 -0.02 1.60 16 33 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -71.61 298.75 -0.31 -71.93 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.25 Total: 10.60 kcal Atomic # 6 Polarization: -46.60 SS G_CDS: 2.80 Total: -43.80 kcal Atomic # 7 Polarization: -85.13 SS G_CDS: -0.62 Total: -85.75 kcal Atomic # 8 Polarization: -64.17 SS G_CDS: -4.45 Total: -68.62 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: 70.32 SS G_CDS: -0.32 Total: 70.00 kcal Total: -71.61 -0.31 -71.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696293101.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.862 kcal (2) G-P(sol) polarization free energy of solvation -71.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds