Wall clock time and date at job start Mon Mar 30 2020 04:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47010 * 2 1 4 4 S 1.81405 * 115.54688 * 293.68632 * 3 2 1 5 5 O 1.42100 * 110.54486 * 45.62547 * 4 3 2 6 6 O 1.42108 * 110.54259 * 268.87018 * 4 3 2 7 7 N 1.65609 * 104.44887 * 157.24912 * 4 3 2 8 8 C 1.46496 * 119.99751 * 66.95884 * 7 4 3 9 9 C 1.53002 * 109.47038 * 158.72711 * 8 7 4 10 10 C 1.50696 * 109.47505 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99848 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00241 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99973 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99975 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47147 * 60.00295 * 14 12 10 16 16 H 1.48503 * 109.46994 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47058 * 299.99987 * 14 12 10 18 18 C 1.52995 * 117.52170 * 79.38692 * 3 2 1 19 19 C 1.52996 * 117.49911 * 148.01911 * 3 2 1 20 20 H 1.08994 * 109.47242 * 186.94346 * 1 2 3 21 21 H 1.09000 * 109.47397 * 306.94354 * 1 2 3 22 22 H 1.09000 * 109.46876 * 66.94302 * 1 2 3 23 23 H 1.08994 * 109.47021 * 239.99707 * 2 1 3 24 24 H 1.08996 * 109.46875 * 119.99485 * 2 1 3 25 25 H 0.97000 * 120.00044 * 246.68478 * 7 4 3 26 26 H 1.08999 * 109.47070 * 278.72644 * 8 7 4 27 27 H 1.09001 * 109.47285 * 38.72496 * 8 7 4 28 28 H 1.08999 * 109.47135 * 299.99893 * 9 8 7 29 29 H 1.09001 * 109.47258 * 59.99768 * 9 8 7 30 30 H 0.96998 * 119.99886 * 179.97438 * 13 12 10 31 31 H 1.09002 * 117.50196 * 214.96619 * 18 3 2 32 32 H 1.09000 * 117.49920 * 359.97438 * 18 3 2 33 33 H 1.08995 * 117.50178 * 359.97169 * 19 3 2 34 34 H 1.09001 * 117.49964 * 144.99501 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 1.6808 2.3992 -1.4988 5 8 0.3291 2.2147 -1.8963 6 8 2.7430 2.2769 -2.4349 7 7 1.7499 3.9791 -1.0070 8 6 3.0264 4.5588 -0.5821 9 6 2.9555 6.0833 -0.6907 10 6 4.2684 6.6797 -0.2530 11 1 5.0728 6.0359 0.0708 12 6 4.4426 8.0473 -0.2658 13 7 3.4629 8.8314 -0.6595 14 14 6.0703 8.7866 0.2762 15 1 7.1596 8.2780 -0.5955 16 1 6.0014 10.2663 0.1708 17 1 6.3436 8.4033 1.6846 18 6 2.0400 2.1923 1.3336 19 6 3.3608 1.7248 0.7188 20 1 -0.3633 -1.0201 0.1242 21 1 -0.3634 0.6176 0.8213 22 1 -0.3633 0.4025 -0.9456 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5137 0.8900 25 1 0.9459 4.5217 -1.0041 26 1 3.2271 4.2771 0.4516 27 1 3.8259 4.1857 -1.2221 28 1 2.7547 6.3650 -1.7243 29 1 2.1560 6.4564 -0.0506 30 1 3.5854 9.7936 -0.6681 31 1 1.8244 3.2605 1.3105 32 1 1.6763 1.6581 2.2114 33 1 3.8662 0.8831 1.1921 34 1 4.0139 2.4855 0.2911 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696314686.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:52 Heat of formation + Delta-G solvation = -62.722308 kcal Electronic energy + Delta-G solvation = -16677.229269 eV Core-core repulsion = 13930.721752 eV Total energy + Delta-G solvation = -2746.507517 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.103 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.18332 -36.89290 -35.71822 -35.36995 -32.81642 -31.91165 -29.12594 -24.58838 -24.44964 -22.62220 -21.68038 -21.13552 -18.85732 -17.27056 -16.80568 -16.30708 -15.61184 -15.15306 -14.55775 -14.20496 -14.12833 -13.78430 -13.53351 -12.80674 -12.57283 -12.25726 -11.87708 -11.80472 -11.73822 -11.68271 -11.33444 -11.17746 -11.06719 -10.91272 -10.64482 -10.47237 -10.46449 -10.07057 -9.60932 -9.29907 -8.86588 -8.41754 -6.08892 -4.12795 0.54471 2.97693 3.25428 3.29564 3.34592 3.36822 4.01066 4.35773 4.40274 4.44938 4.57454 4.89434 5.11478 5.25318 5.27809 5.30207 5.48546 5.60369 5.69536 5.76114 5.79466 5.92029 5.92518 6.14134 6.25098 6.43376 6.71467 7.42221 7.54332 7.64723 7.89395 8.26551 8.92897 9.51960 11.02439 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.040056 B = 0.005679 C = 0.005375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.846928 B = 4929.687328 C = 5207.571138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.063 4.063 3 C -0.653 4.653 4 S 2.642 3.358 5 O -0.964 6.964 6 O -0.956 6.956 7 N -1.113 6.113 8 C 0.110 3.890 9 C 0.018 3.982 10 C -0.526 4.526 11 H 0.058 0.942 12 C 0.060 3.940 13 N -0.892 5.892 14 Si 0.896 3.104 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.122 4.122 19 C -0.126 4.126 20 H 0.059 0.941 21 H 0.060 0.940 22 H 0.080 0.920 23 H 0.068 0.932 24 H 0.074 0.926 25 H 0.416 0.584 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.026 0.974 29 H 0.024 0.976 30 H 0.263 0.737 31 H 0.121 0.879 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.798 -15.073 4.416 16.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.102 4.102 3 C -0.741 4.741 4 S 2.732 3.268 5 O -0.954 6.954 6 O -0.946 6.946 7 N -0.874 5.874 8 C -0.014 4.014 9 C -0.021 4.021 10 C -0.565 4.565 11 H 0.077 0.923 12 C -0.142 4.142 13 N -0.531 5.531 14 Si 0.723 3.277 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.160 4.160 19 C -0.164 4.164 20 H 0.078 0.922 21 H 0.080 0.920 22 H 0.099 0.901 23 H 0.087 0.913 24 H 0.093 0.907 25 H 0.251 0.749 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.139 0.861 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.855 -15.322 3.522 16.187 hybrid contribution 0.670 0.612 0.975 1.332 sum -3.185 -14.710 4.496 15.708 Atomic orbital electron populations 1.22079 0.94549 1.02200 1.04441 1.20746 0.96489 0.89896 1.03070 1.32351 1.13344 1.10923 1.17525 1.03942 0.73917 0.73787 0.75185 1.93524 1.35582 1.85425 1.80912 1.93586 1.58195 1.85816 1.56997 1.55538 1.18209 1.28341 1.85275 1.21825 0.82132 0.99487 0.97979 1.19282 0.97852 0.86672 0.98291 1.21042 0.98801 0.91766 1.44854 0.92334 1.24997 0.96789 0.97275 0.95157 1.69949 1.31864 1.04228 1.47044 0.86599 0.83891 0.77977 0.79186 1.20102 1.21266 1.20174 1.23022 1.00087 1.00866 0.92020 1.23025 0.88922 1.03845 1.00625 0.92189 0.92047 0.90080 0.91286 0.90748 0.74899 0.92568 0.91221 0.95606 0.95813 0.92759 0.86123 0.87567 0.87400 0.86623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 9.58 37.16 0.36 -1.50 16 2 C -0.06 -0.67 5.84 -26.73 -0.16 -0.82 16 3 C -0.65 -7.98 2.27 -90.63 -0.21 -8.19 16 4 S 2.64 41.92 5.60 -107.50 -0.60 41.32 16 5 O -0.96 -16.69 15.67 -57.54 -0.90 -17.60 16 6 O -0.96 -18.55 17.36 -57.54 -1.00 -19.55 16 7 N -1.11 -18.34 4.87 -10.61 -0.05 -18.39 16 8 C 0.11 2.09 4.28 -4.04 -0.02 2.07 16 9 C 0.02 0.43 5.14 -27.88 -0.14 0.29 16 10 C -0.53 -14.06 9.11 -34.44 -0.31 -14.37 16 11 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 14 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 C -0.12 -1.33 9.26 -26.73 -0.25 -1.58 16 19 C -0.13 -1.43 9.30 -26.73 -0.25 -1.67 16 20 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 21 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.08 1.01 5.98 -51.93 -0.31 0.70 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 25 H 0.42 6.44 8.66 -34.48 -0.30 6.14 16 26 H 0.06 0.93 5.30 -51.93 -0.28 0.66 16 27 H 0.07 1.36 7.46 -51.93 -0.39 0.98 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.12 1.39 5.87 -51.93 -0.30 1.09 16 32 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.12 1.42 6.04 -51.93 -0.31 1.11 16 LS Contribution 288.31 15.07 4.34 4.34 Total: -1.00 -32.17 288.31 -8.38 -40.55 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -4.81 Total: 2.87 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: -1.07 Total: -24.22 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.68 Total: -43.58 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -1.90 Total: -37.15 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 41.92 SS G_CDS: -0.60 Total: 41.32 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.17 -8.38 -40.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696314686.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.176 kcal (2) G-P(sol) polarization free energy of solvation -32.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds