Wall clock time and date at job start Mon Mar 30 2020 04:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 120.00191 * 2 1 4 4 N 1.46899 * 109.47132 * 359.97438 * 3 2 1 5 5 C 1.50706 * 109.46772 * 239.99987 * 3 2 1 6 6 O 1.20823 * 119.99793 * 264.99518 * 5 3 2 7 7 O 1.34224 * 120.00087 * 84.72643 * 5 3 2 8 8 C 1.50700 * 109.47333 * 119.99753 * 3 2 1 9 9 C 1.38635 * 119.74591 * 29.72679 * 8 3 2 10 10 C 1.37621 * 120.24706 * 179.71934 * 9 8 3 11 11 C 1.40725 * 119.73994 * 0.57247 * 10 9 8 12 12 C 1.41391 * 120.24078 * 179.67956 * 11 10 9 13 13 H 1.08000 * 119.99823 * 204.40380 * 12 11 10 14 14 C 1.39953 * 120.00116 * 24.40691 * 12 11 10 15 15 N 1.30822 * 119.99977 * 17.84787 * 14 12 11 16 16 Si 1.86796 * 119.99984 * 197.84321 * 14 12 11 17 17 H 1.48500 * 109.46864 * 60.00109 * 16 14 12 18 18 H 1.48507 * 109.47147 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47463 * 300.00502 * 16 14 12 20 20 C 1.40711 * 119.51204 * 359.70165 * 11 10 9 21 21 C 1.37624 * 119.74739 * 0.02562 * 20 11 10 22 22 H 1.08002 * 119.99552 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.00218 * 179.97438 * 1 2 3 24 24 H 1.08001 * 119.99771 * 179.97438 * 2 1 3 25 25 H 1.00894 * 111.00175 * 60.00183 * 4 3 2 26 26 H 1.00902 * 110.99968 * 183.95546 * 4 3 2 27 27 H 0.96701 * 116.99805 * 180.27644 * 7 5 3 28 28 H 1.07999 * 119.87674 * 359.97438 * 9 8 3 29 29 H 1.07997 * 120.13031 * 180.27787 * 10 9 8 30 30 H 0.96997 * 119.99902 * 179.97438 * 15 14 12 31 31 H 1.08000 * 120.12718 * 180.02562 * 20 11 10 32 32 H 1.07994 * 119.87499 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 1.1090 2.4216 -0.0006 5 6 2.9300 1.3848 -1.2305 6 8 4.0889 1.0475 -1.1762 7 8 2.4128 1.8254 -2.3881 8 6 2.9299 1.3849 1.2305 9 6 3.4311 0.2224 1.7955 10 6 4.2281 0.2837 2.9158 11 6 4.5237 1.5319 3.4947 12 6 5.3358 1.6067 4.6497 13 1 5.2534 2.4545 5.3137 14 6 6.2463 0.5822 4.9325 15 7 6.6058 -0.2518 3.9909 16 14 6.9484 0.4056 6.6545 17 1 5.8423 0.1790 7.6191 18 1 7.8820 -0.7486 6.6925 19 1 7.6784 1.6457 7.0210 20 6 4.0047 2.7047 2.9159 21 6 3.2146 2.6199 1.7923 22 1 -0.5399 0.9354 -0.0004 23 1 -0.5400 -0.9353 -0.0004 24 1 1.8500 -0.9353 0.0004 25 1 0.5158 2.3907 0.8149 26 1 1.5884 3.3071 -0.0656 27 1 3.0062 1.8549 -3.1510 28 1 3.1987 -0.7347 1.3524 29 1 4.6212 -0.6228 3.3517 30 1 7.2371 -0.9617 4.1868 31 1 4.2256 3.6679 3.3518 32 1 2.8149 3.5187 1.3466 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713743015.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:38 Heat of formation + Delta-G solvation = -64.384427 kcal Electronic energy + Delta-G solvation = -17604.086608 eV Core-core repulsion = 14722.063064 eV Total energy + Delta-G solvation = -2882.023543 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.62814 -39.61716 -37.42988 -37.00406 -35.27489 -32.59291 -31.72824 -30.71514 -28.33585 -26.38746 -23.57827 -22.79095 -21.92098 -20.04910 -19.33011 -19.00528 -18.15064 -17.37618 -17.03865 -16.49305 -15.93429 -15.62392 -15.27640 -14.78915 -14.57191 -14.27731 -13.81611 -13.62653 -13.56058 -13.03789 -12.83133 -12.61030 -12.48916 -12.32310 -12.09060 -11.68458 -11.62154 -11.23578 -11.03125 -10.37514 -9.91354 -9.41650 -9.27988 -8.68304 -6.40010 0.81314 1.05199 1.13643 1.35539 1.42291 1.48561 1.54630 2.17266 2.28028 2.72894 3.41818 3.69403 3.91332 4.07936 4.36522 4.37330 4.49000 4.57950 4.97153 5.04531 5.11873 5.28290 5.37991 5.58503 5.61316 5.71328 5.73024 5.86119 5.96765 6.04485 6.18001 6.30674 6.45897 6.64195 6.87969 6.96942 7.09788 8.28013 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.037126 B = 0.005845 C = 0.005790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.999486 B = 4788.860478 C = 4834.548625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.178 4.178 3 C 0.230 3.770 4 N -0.808 5.808 5 C 0.493 3.507 6 O -0.546 6.546 7 O -0.493 6.493 8 C -0.230 4.230 9 C -0.076 4.076 10 C -0.194 4.194 11 C 0.084 3.916 12 C -0.498 4.498 13 H 0.079 0.921 14 C 0.033 3.967 15 N -0.824 5.824 16 Si 0.986 3.014 17 H -0.258 1.258 18 H -0.268 1.268 19 H -0.258 1.258 20 C -0.242 4.242 21 C -0.082 4.082 22 H 0.124 0.876 23 H 0.120 0.880 24 H 0.104 0.896 25 H 0.359 0.641 26 H 0.348 0.652 27 H 0.418 0.582 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.289 0.711 31 H 0.101 0.899 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.357 1.586 -5.918 11.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.197 4.197 3 C 0.136 3.864 4 N -0.341 5.341 5 C 0.335 3.665 6 O -0.435 6.435 7 O -0.304 6.304 8 C -0.233 4.233 9 C -0.094 4.094 10 C -0.213 4.213 11 C 0.081 3.919 12 C -0.527 4.527 13 H 0.097 0.903 14 C -0.182 4.182 15 N -0.449 5.449 16 Si 0.806 3.194 17 H -0.182 1.182 18 H -0.192 1.192 19 H -0.182 1.182 20 C -0.261 4.261 21 C -0.100 4.100 22 H 0.142 0.858 23 H 0.138 0.862 24 H 0.122 0.878 25 H 0.175 0.825 26 H 0.163 0.837 27 H 0.278 0.722 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.100 0.900 31 H 0.119 0.881 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.435 0.979 -6.330 11.403 hybrid contribution 1.845 -0.011 1.060 2.128 sum -7.589 0.968 -5.270 9.290 Atomic orbital electron populations 1.24114 0.94622 1.03863 0.94716 1.22457 0.96903 0.94887 1.05422 1.17837 0.89078 0.93797 0.85698 1.59065 1.22536 1.04183 1.48361 1.23721 0.85932 0.71774 0.85087 1.90741 1.20267 1.46568 1.85890 1.84607 1.47882 1.77738 1.20208 1.19539 1.09514 0.93643 1.00575 1.20694 0.96287 0.97080 0.95373 1.21273 1.02559 0.97764 0.99735 1.18014 0.90021 0.91790 0.92040 1.19883 1.18512 1.06496 1.07817 0.90265 1.26857 0.95255 0.93514 1.02615 1.69900 1.25644 1.14162 1.35200 0.85203 0.78485 0.79042 0.76688 1.18216 1.19246 1.18208 1.21126 1.07692 0.96882 1.00415 1.20594 0.97622 0.96097 0.95714 0.85762 0.86189 0.87767 0.82512 0.83718 0.72192 0.88166 0.88275 0.90046 0.88079 0.86087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 13.89 67.78 0.94 -2.24 16 2 C -0.18 -5.37 7.76 25.64 0.20 -5.17 16 3 C 0.23 7.70 1.00 1.29 0.00 7.70 16 4 N -0.81 -21.00 7.10 -160.53 -1.14 -22.14 16 5 C 0.49 17.32 7.08 71.24 0.50 17.83 16 6 O -0.55 -24.04 16.99 21.97 0.37 -23.67 16 7 O -0.49 -12.93 13.13 -51.36 -0.67 -13.60 16 8 C -0.23 -9.71 4.21 -19.68 -0.08 -9.79 16 9 C -0.08 -3.63 9.09 22.22 0.20 -3.43 16 10 C -0.19 -10.57 8.70 22.73 0.20 -10.37 16 11 C 0.08 4.62 5.58 -21.29 -0.12 4.51 16 12 C -0.50 -27.28 9.05 23.46 0.21 -27.06 16 13 H 0.08 4.13 7.91 -2.91 -0.02 4.11 16 14 C 0.03 1.69 5.14 85.26 0.44 2.13 16 15 N -0.82 -44.55 10.95 21.83 0.24 -44.32 16 16 Si 0.99 38.55 29.59 68.60 2.03 40.58 16 17 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 18 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 19 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 20 C -0.24 -11.91 9.80 22.73 0.22 -11.68 16 21 C -0.08 -3.49 9.26 22.22 0.21 -3.28 16 22 H 0.12 2.61 6.31 -2.91 -0.02 2.60 16 23 H 0.12 2.23 8.06 -2.91 -0.02 2.20 16 24 H 0.10 3.29 6.90 -2.91 -0.02 3.27 16 25 H 0.36 8.47 8.01 -89.70 -0.72 7.75 16 26 H 0.35 8.66 7.34 -89.69 -0.66 8.01 16 27 H 0.42 7.16 9.10 -74.06 -0.67 6.48 16 28 H 0.10 4.46 6.35 -2.91 -0.02 4.44 16 29 H 0.10 5.67 6.16 -2.91 -0.02 5.66 16 30 H 0.29 14.15 8.30 -92.71 -0.77 13.38 16 31 H 0.10 4.67 8.06 -2.91 -0.02 4.65 16 32 H 0.12 4.17 6.45 -2.91 -0.02 4.15 16 Total: -1.00 -67.55 278.58 2.89 -64.66 By element: Atomic # 1 Polarization: 40.22 SS G_CDS: -0.86 Total: 39.36 kcal Atomic # 6 Polarization: -43.79 SS G_CDS: 2.92 Total: -40.87 kcal Atomic # 7 Polarization: -65.56 SS G_CDS: -0.90 Total: -66.46 kcal Atomic # 8 Polarization: -36.97 SS G_CDS: -0.30 Total: -37.27 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal Total: -67.55 2.89 -64.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713743015.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.273 kcal (2) G-P(sol) polarization free energy of solvation -67.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds