Wall clock time and date at job start Mon Mar 30 2020 03:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46499 * 120.00318 * 2 1 4 4 C 1.52992 * 109.47256 * 274.99896 * 3 2 1 5 5 C 1.52999 * 112.85257 * 48.80404 * 4 3 2 6 6 C 1.53783 * 113.61705 * 277.49796 * 4 3 2 7 7 C 1.53779 * 87.08128 * 220.01795 * 6 4 3 8 8 C 1.53778 * 87.08257 * 25.43083 * 7 6 4 9 9 S 1.65607 * 119.99713 * 179.97438 * 2 1 3 10 10 O 1.42097 * 106.40132 * 156.45958 * 9 2 1 11 11 O 1.42107 * 106.39904 * 23.54230 * 9 2 1 12 12 C 1.76199 * 107.21942 * 270.00130 * 9 2 1 13 13 H 1.08000 * 119.99782 * 359.97438 * 12 9 2 14 14 C 1.37872 * 119.99956 * 179.97438 * 12 9 2 15 15 N 1.31513 * 120.00060 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 119.99957 * 180.02562 * 14 12 9 17 17 H 1.48499 * 109.47196 * 89.99970 * 16 14 12 18 18 H 1.48502 * 109.47265 * 210.00296 * 16 14 12 19 19 H 1.48503 * 109.47102 * 329.99934 * 16 14 12 20 20 H 1.09002 * 109.47553 * 270.00440 * 1 2 3 21 21 H 1.09005 * 109.46622 * 29.99973 * 1 2 3 22 22 H 1.09004 * 109.47661 * 149.99588 * 1 2 3 23 23 H 1.08998 * 109.47024 * 35.00447 * 3 2 1 24 24 H 1.09007 * 109.46904 * 154.99954 * 3 2 1 25 25 H 1.09002 * 109.47189 * 69.66186 * 5 4 3 26 26 H 1.08996 * 109.47702 * 189.66700 * 5 4 3 27 27 H 1.09003 * 109.46900 * 309.66888 * 5 4 3 28 28 H 1.09003 * 113.61600 * 334.56742 * 6 4 3 29 29 H 1.09006 * 113.61475 * 105.46902 * 6 4 3 30 30 H 1.09002 * 113.61513 * 270.88052 * 7 6 4 31 31 H 1.09004 * 113.69057 * 139.99391 * 7 6 4 32 32 H 1.08996 * 113.61445 * 220.01842 * 8 7 6 33 33 H 1.09008 * 113.61461 * 89.11482 * 8 7 6 34 34 H 0.97000 * 119.99617 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3437 1.7732 -1.4369 5 6 1.0241 1.7529 -2.2109 6 6 3.5164 1.1330 -2.1984 7 6 3.7846 2.5240 -2.7967 8 6 3.1023 3.1063 -1.5476 9 16 2.2929 -1.4342 0.0006 10 8 3.5758 -1.1572 -0.5439 11 8 1.4111 -2.4068 -0.5434 12 6 2.5537 -1.8852 1.6839 13 1 2.1873 -1.2494 2.4762 14 6 3.2254 -3.0498 1.9894 15 7 3.6711 -3.8244 1.0245 16 14 3.5012 -3.5283 3.7739 17 1 2.3616 -4.3547 4.2466 18 1 4.7595 -4.3086 3.8884 19 1 3.6019 -2.3020 4.6053 20 1 -0.3634 0.0001 1.0277 21 1 -0.3633 0.8901 -0.5139 22 1 -0.3634 -0.8899 -0.5139 23 1 1.6502 2.0042 0.5895 24 1 3.1858 1.1175 0.4344 25 1 0.3564 2.5159 -1.8108 26 1 1.2174 1.9555 -3.2643 27 1 0.5581 0.7728 -2.1090 28 1 4.3156 0.7756 -1.5489 29 1 3.2061 0.3928 -2.9359 30 1 3.2391 2.7143 -3.7210 31 1 4.8434 2.7719 -2.8715 32 1 2.4576 3.9592 -1.7599 33 1 3.7882 3.2884 -0.7202 34 1 4.1441 -4.6435 1.2395 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720696162.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:53 Heat of formation + Delta-G solvation = -98.412275 kcal Electronic energy + Delta-G solvation = -17414.144090 eV Core-core repulsion = 14666.088939 eV Total energy + Delta-G solvation = -2748.055150 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.52318 -37.36225 -36.44390 -36.04188 -35.14485 -30.33346 -29.00021 -28.24436 -26.47084 -25.41608 -23.09538 -20.73194 -19.21787 -18.83190 -18.16881 -17.04329 -16.78709 -16.55973 -15.92930 -15.57823 -15.17394 -14.60360 -14.20766 -14.01025 -13.77302 -13.44143 -13.18094 -13.04016 -13.00167 -12.72269 -12.50202 -12.40630 -12.31837 -12.18095 -12.08299 -11.72895 -11.46895 -11.26067 -11.09199 -10.87609 -10.84822 -9.59510 -8.73920 -7.48421 0.38602 1.31245 1.31742 1.47754 2.19490 2.56757 2.89601 3.70191 3.78484 3.87951 3.90635 4.07414 4.28585 4.30593 4.40291 4.66448 4.73395 4.78185 4.87147 4.92833 4.98738 5.01622 5.05261 5.09998 5.17408 5.19599 5.29862 5.33764 5.36446 5.62192 5.77191 5.89692 6.09140 6.77802 8.19998 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.035522 B = 0.008017 C = 0.007669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.055318 B = 3491.913654 C = 3650.133921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -1.008 6.008 3 C 0.138 3.862 4 C -0.112 4.112 5 C -0.129 4.129 6 C -0.148 4.148 7 C -0.133 4.133 8 C -0.111 4.111 9 S 2.718 3.282 10 O -1.023 7.023 11 O -1.049 7.049 12 C -1.048 5.048 13 H 0.114 0.886 14 C 0.069 3.931 15 N -0.894 5.894 16 Si 0.987 3.013 17 H -0.254 1.254 18 H -0.261 1.261 19 H -0.248 1.248 20 H 0.059 0.941 21 H 0.105 0.895 22 H 0.056 0.944 23 H 0.102 0.898 24 H 0.062 0.938 25 H 0.083 0.917 26 H 0.061 0.939 27 H 0.047 0.953 28 H 0.069 0.931 29 H 0.033 0.967 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.995 13.602 -1.058 14.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.846 5.846 3 C 0.013 3.987 4 C -0.113 4.113 5 C -0.186 4.186 6 C -0.185 4.185 7 C -0.170 4.170 8 C -0.149 4.149 9 S 2.819 3.181 10 O -1.013 7.013 11 O -1.039 7.039 12 C -1.181 5.181 13 H 0.132 0.868 14 C -0.143 4.143 15 N -0.526 5.526 16 Si 0.805 3.195 17 H -0.178 1.178 18 H -0.185 1.185 19 H -0.171 1.171 20 H 0.077 0.923 21 H 0.123 0.877 22 H 0.075 0.925 23 H 0.121 0.879 24 H 0.081 0.919 25 H 0.102 0.898 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.675 12.997 -1.929 13.643 hybrid contribution 0.290 -0.901 1.168 1.504 sum -3.385 12.096 -0.761 12.583 Atomic orbital electron populations 1.21743 0.78426 1.03874 1.02360 1.57318 1.15232 1.21083 1.90950 1.21363 0.96078 0.84807 0.96501 1.22430 0.95622 0.97858 0.95423 1.21703 0.95200 1.02118 0.99551 1.23118 0.99197 0.96674 0.99558 1.22824 1.01117 0.94830 0.98263 1.22853 0.98767 0.95275 0.97974 1.00040 0.71498 0.70562 0.76001 1.93304 1.42411 1.84583 1.80995 1.93272 1.68209 1.60799 1.81648 1.31102 1.50152 1.17539 1.19269 0.86782 1.26014 0.89486 0.93252 1.05592 1.69994 1.32382 1.13655 1.36525 0.85186 0.79239 0.79649 0.75473 1.17824 1.18525 1.17106 0.92279 0.87710 0.92518 0.87949 0.91939 0.89780 0.92040 0.93399 0.91188 0.94797 0.89235 0.91165 0.88955 0.89681 0.89208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.65 9.30 127.77 1.19 3.84 16 2 N -1.01 -40.59 2.82 -539.14 -1.52 -42.11 16 3 C 0.14 4.58 4.98 86.38 0.43 5.01 16 4 C -0.11 -3.30 1.17 -51.66 -0.06 -3.36 16 5 C -0.13 -3.27 7.69 71.98 0.55 -2.72 16 6 C -0.15 -5.26 5.91 31.12 0.18 -5.08 16 7 C -0.13 -3.34 7.73 31.12 0.24 -3.10 16 8 C -0.11 -2.49 7.23 31.12 0.23 -2.26 16 9 S 2.72 149.16 4.93 -56.49 -0.28 148.88 16 10 O -1.02 -60.12 14.37 -128.00 -1.84 -61.96 16 11 O -1.05 -64.46 16.62 -128.00 -2.13 -66.58 16 12 C -1.05 -59.35 9.75 67.73 0.66 -58.69 16 13 H 0.11 5.88 7.81 -2.91 -0.02 5.86 16 14 C 0.07 3.94 5.46 84.65 0.46 4.40 16 15 N -0.89 -54.53 13.19 21.45 0.28 -54.24 16 16 Si 0.99 42.11 29.54 68.60 2.03 44.13 16 17 H -0.25 -10.23 7.11 99.48 0.71 -9.53 16 18 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 19 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 20 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 21 H 0.10 2.55 5.88 -2.38 -0.01 2.54 16 22 H 0.06 2.08 7.02 -2.39 -0.02 2.06 16 23 H 0.10 2.61 8.11 -2.39 -0.02 2.59 16 24 H 0.06 2.32 7.41 -2.38 -0.02 2.30 16 25 H 0.08 1.61 7.99 -2.39 -0.02 1.59 16 26 H 0.06 1.43 7.34 -2.39 -0.02 1.41 16 27 H 0.05 1.41 5.59 -2.39 -0.01 1.40 16 28 H 0.07 2.95 6.73 -2.39 -0.02 2.94 16 29 H 0.03 1.32 8.10 -2.38 -0.02 1.30 16 30 H 0.09 1.95 7.64 -2.39 -0.02 1.93 16 31 H 0.07 1.64 8.14 -2.38 -0.02 1.63 16 32 H 0.09 1.57 8.10 -2.39 -0.02 1.55 16 33 H 0.08 1.85 8.10 -2.38 -0.02 1.83 16 34 H 0.30 16.31 8.31 -92.71 -0.77 15.54 16 Total: -1.00 -75.61 282.44 1.51 -74.10 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 1.08 Total: 19.73 kcal Atomic # 6 Polarization: -65.83 SS G_CDS: 3.88 Total: -61.95 kcal Atomic # 7 Polarization: -95.12 SS G_CDS: -1.24 Total: -96.36 kcal Atomic # 8 Polarization: -124.57 SS G_CDS: -3.97 Total: -128.54 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Atomic # 16 Polarization: 149.16 SS G_CDS: -0.28 Total: 148.88 kcal Total: -75.61 1.51 -74.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720696162.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.309 kcal (2) G-P(sol) polarization free energy of solvation -75.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds