Wall clock time and date at job start Mon Mar 30 2020 03:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.44416 * 2 1 4 4 O 1.42997 * 109.44341 * 119.89809 * 2 1 3 5 5 C 1.35985 * 116.71878 * 166.44710 * 4 2 1 6 6 C 1.38390 * 120.67380 * 147.16331 * 5 4 2 7 7 C 1.38315 * 119.87554 * 180.12968 * 6 5 4 8 8 C 1.38281 * 120.25730 * 359.97438 * 7 6 5 9 9 C 1.38285 * 120.20277 * 359.97438 * 8 7 6 10 10 C 1.38505 * 119.80762 * 359.97438 * 9 8 7 11 11 N 1.40219 * 120.73405 * 180.02562 * 10 9 8 12 12 C 1.46506 * 120.50545 * 15.48398 * 11 10 9 13 13 C 1.50694 * 109.46953 * 90.00129 * 12 11 10 14 14 H 1.08003 * 120.00287 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99963 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00258 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00396 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47245 * 89.99868 * 17 15 13 19 19 H 1.48498 * 109.47396 * 210.00256 * 17 15 13 20 20 H 1.48503 * 109.46970 * 330.00340 * 17 15 13 21 21 C 1.35086 * 118.98010 * 195.50233 * 11 10 9 22 22 O 1.21294 * 120.13484 * 181.64156 * 21 11 10 23 23 H 1.08994 * 109.47188 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47267 * 299.93742 * 1 2 3 25 25 H 1.09001 * 109.47220 * 59.93413 * 1 2 3 26 26 H 1.08005 * 120.06431 * 0.11158 * 6 5 4 27 27 H 1.07998 * 119.87275 * 179.71611 * 7 6 5 28 28 H 1.08003 * 119.90083 * 179.97438 * 8 7 6 29 29 H 1.08000 * 120.09514 * 180.02562 * 9 8 7 30 30 H 1.08997 * 109.46846 * 209.99825 * 12 11 10 31 31 H 1.08995 * 109.47292 * 329.99800 * 12 11 10 32 32 H 0.96997 * 120.00763 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 8 2.0060 -0.6721 1.1690 5 6 3.3230 -1.0103 1.1861 6 6 4.0346 -1.0180 2.3731 7 6 5.3742 -1.3621 2.3711 8 6 6.0053 -1.6990 1.1877 9 6 5.3007 -1.6947 -0.0022 10 6 3.9587 -1.3521 -0.0064 11 7 3.2255 -1.3418 -1.2016 12 6 3.7471 -2.0044 -2.3997 13 6 3.2803 -3.4370 -2.4248 14 1 2.6578 -3.8163 -1.6279 15 6 3.6479 -4.2637 -3.4653 16 7 4.4063 -3.8021 -4.4355 17 14 3.0700 -6.0397 -3.4962 18 1 1.7729 -6.1258 -4.2141 19 1 4.0788 -6.8765 -4.1944 20 1 2.8989 -6.5288 -2.1045 21 6 2.0312 -0.7114 -1.2314 22 8 1.3658 -0.7150 -2.2456 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5129 0.8906 25 1 -0.3634 0.5149 -0.8894 26 1 3.5448 -0.7554 3.2992 27 1 5.9306 -1.3635 3.2967 28 1 7.0517 -1.9664 1.1927 29 1 5.7952 -1.9586 -0.9253 30 1 3.3830 -1.4881 -3.2879 31 1 4.8366 -1.9774 -2.3847 32 1 4.6653 -4.3837 -5.1673 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036928468.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:51 Heat of formation + Delta-G solvation = -39.694346 kcal Electronic energy + Delta-G solvation = -18015.639024 eV Core-core repulsion = 15134.686123 eV Total energy + Delta-G solvation = -2880.952901 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.01751 -38.31143 -37.29110 -35.15043 -32.73607 -31.80428 -29.85173 -29.08854 -27.56156 -24.50909 -22.95037 -22.79429 -21.37607 -18.85067 -18.74346 -17.02093 -16.42586 -16.30775 -15.16700 -14.99258 -14.45029 -14.15995 -14.14467 -13.67830 -13.52275 -12.88600 -12.67749 -12.31766 -11.96798 -11.94811 -11.65902 -11.37375 -11.14611 -10.88988 -10.76079 -10.61769 -10.30469 -10.17670 -9.31719 -9.12727 -8.54097 -8.29727 -7.22982 -6.15705 -4.21506 1.48167 1.61693 2.91514 3.23579 3.26767 3.32525 3.38658 3.70193 4.08007 4.36951 4.47940 4.99204 5.06186 5.10459 5.18957 5.27009 5.50662 5.57257 5.74531 5.79562 5.93992 6.09317 6.21035 6.42785 6.49558 6.69969 6.85767 6.95097 7.17030 7.24445 7.48633 7.78934 8.03346 8.06470 8.50123 8.82062 9.43648 10.92112 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.019614 B = 0.009014 C = 0.007065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.223576 B = 3105.605388 C = 3962.086273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.075 3.925 3 H 0.093 0.907 4 O -0.307 6.307 5 C 0.061 3.939 6 C -0.114 4.114 7 C -0.131 4.131 8 C -0.113 4.113 9 C -0.119 4.119 10 C 0.124 3.876 11 N -0.536 5.536 12 C 0.239 3.761 13 C -0.529 4.529 14 H 0.059 0.941 15 C 0.065 3.935 16 N -0.893 5.893 17 Si 0.901 3.099 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.481 3.519 22 O -0.503 6.503 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.130 0.870 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.140 0.860 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.433 7.207 12.229 14.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.015 3.985 3 H 0.111 0.889 4 O -0.222 6.222 5 C 0.015 3.985 6 C -0.133 4.133 7 C -0.150 4.150 8 C -0.131 4.131 9 C -0.140 4.140 10 C 0.027 3.973 11 N -0.258 5.258 12 C 0.121 3.879 13 C -0.568 4.568 14 H 0.077 0.923 15 C -0.138 4.138 16 N -0.532 5.532 17 Si 0.729 3.271 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.197 1.197 21 C 0.267 3.733 22 O -0.377 6.377 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.107 0.893 26 H 0.148 0.852 27 H 0.143 0.857 28 H 0.143 0.857 29 H 0.158 0.842 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.041 7.111 11.510 13.529 hybrid contribution -0.110 -1.091 -0.353 1.152 sum -0.150 6.020 11.156 12.678 Atomic orbital electron populations 1.21653 0.89665 1.04225 1.03276 1.22633 0.97654 0.95918 0.82246 0.88933 1.86147 1.21885 1.74488 1.39715 1.18633 0.83518 1.03290 0.93073 1.20354 0.93573 1.03474 0.95922 1.20812 0.93779 1.02214 0.98196 1.20948 0.99915 1.00443 0.91826 1.20905 0.91717 1.01551 0.99796 1.18269 0.92776 1.00580 0.85641 1.46302 1.18074 1.49875 1.11552 1.19601 0.95170 0.92596 0.80484 1.21303 1.32484 0.94807 1.08189 0.92294 1.24905 0.94808 0.99128 0.94967 1.69918 1.35779 1.36522 1.10934 0.86433 0.78586 0.83780 0.78335 1.20406 1.20923 1.19746 1.21220 0.81457 0.80283 0.90311 1.90709 1.54671 1.59160 1.33203 0.91132 0.90902 0.89284 0.85236 0.85702 0.85672 0.84187 0.93109 0.93741 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 9.14 37.16 0.34 -1.49 16 2 C 0.08 1.26 3.69 -27.84 -0.10 1.15 16 3 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 4 O -0.31 -5.35 10.09 -19.69 -0.20 -5.55 16 5 C 0.06 1.08 6.44 -39.09 -0.25 0.83 16 6 C -0.11 -1.64 10.00 -39.50 -0.39 -2.03 16 7 C -0.13 -1.69 10.04 -39.54 -0.40 -2.09 16 8 C -0.11 -1.61 10.04 -39.55 -0.40 -2.01 16 9 C -0.12 -2.14 9.36 -39.47 -0.37 -2.51 16 10 C 0.12 2.47 6.39 -83.49 -0.53 1.94 16 11 N -0.54 -12.29 2.70 -114.48 -0.31 -12.60 16 12 C 0.24 6.29 4.96 -5.19 -0.03 6.26 16 13 C -0.53 -15.19 9.39 -34.44 -0.32 -15.51 16 14 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 15 C 0.06 1.84 5.46 -17.82 -0.10 1.74 16 16 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 17 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 C 0.48 10.52 7.37 -10.80 -0.08 10.44 16 22 O -0.50 -12.46 15.83 5.54 0.09 -12.37 16 23 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.09 1.20 7.86 -51.93 -0.41 0.79 16 26 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 27 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 28 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 29 H 0.14 2.65 6.12 -52.49 -0.32 2.33 16 30 H 0.05 1.47 7.49 -51.93 -0.39 1.08 16 31 H 0.04 1.15 5.96 -51.93 -0.31 0.84 16 32 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 277.19 15.07 4.18 4.18 Total: -1.00 -32.06 277.19 -6.67 -38.73 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -3.51 Total: -0.72 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -2.63 Total: -3.28 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.43 Total: -37.94 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.11 Total: -17.93 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.06 -6.67 -38.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036928468.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.965 kcal (2) G-P(sol) polarization free energy of solvation -32.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds