Wall clock time and date at job start Mon Mar 30 2020 04:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.46801 * 2 1 4 4 C 1.50689 * 109.47338 * 120.00385 * 2 1 3 5 5 H 1.08005 * 120.00207 * 114.35812 * 4 2 1 6 6 C 1.37881 * 120.00468 * 294.35843 * 4 2 1 7 7 N 1.31509 * 120.00125 * 156.69464 * 6 4 2 8 8 Si 1.86803 * 119.99588 * 336.42909 * 6 4 2 9 9 H 1.48500 * 109.47136 * 180.27320 * 8 6 4 10 10 H 1.48503 * 109.46813 * 300.26822 * 8 6 4 11 11 H 1.48500 * 109.47490 * 60.26969 * 8 6 4 12 12 N 1.46900 * 109.46598 * 240.00409 * 2 1 3 13 13 C 1.46907 * 111.00036 * 85.00027 * 12 2 1 14 14 H 1.08999 * 109.38022 * 324.78589 * 13 12 2 15 15 C 1.52582 * 109.38590 * 84.46875 * 13 12 2 16 16 C 1.52586 * 110.64513 * 190.14447 * 15 13 12 17 17 C 1.53035 * 109.98661 * 290.01805 * 16 15 13 18 18 S 1.81668 * 109.00186 * 63.64350 * 17 16 15 19 19 O 1.42100 * 108.66499 * 191.37491 * 18 17 16 20 20 O 1.42106 * 108.66084 * 60.03149 * 18 17 16 21 21 C 1.53036 * 109.38300 * 204.99676 * 13 12 2 22 22 H 1.08998 * 109.47431 * 173.01882 * 1 2 3 23 23 H 1.09008 * 109.47141 * 293.01151 * 1 2 3 24 24 H 1.08993 * 109.47901 * 53.01347 * 1 2 3 25 25 H 0.96997 * 120.00264 * 354.66164 * 7 6 4 26 26 H 1.00900 * 110.99614 * 208.94928 * 12 2 1 27 27 H 1.09003 * 109.24741 * 310.44718 * 15 13 12 28 28 H 1.09001 * 109.24251 * 69.84599 * 15 13 12 29 29 H 1.08996 * 109.38977 * 169.85660 * 16 15 13 30 30 H 1.08997 * 109.30039 * 50.11956 * 16 15 13 31 31 H 1.09000 * 109.54897 * 303.79308 * 17 16 15 32 32 H 1.09003 * 109.63445 * 183.54675 * 17 16 15 33 33 H 1.09001 * 109.55288 * 296.04597 * 21 13 12 34 34 H 1.09002 * 109.55081 * 56.34286 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.5761 -1.6386 1.1338 6 6 1.7979 -0.1756 2.4794 7 7 1.8045 -0.9536 3.5396 8 14 1.4783 1.6553 2.6663 9 1 1.2636 1.9765 4.1002 10 1 2.6481 2.4163 2.1585 11 1 0.2694 2.0288 1.8890 12 7 2.0195 -0.6924 -1.1995 13 6 2.0823 0.2228 -2.3470 14 1 1.2548 0.9300 -2.2912 15 6 3.4023 0.9874 -2.3133 16 6 3.3954 2.1178 -3.3382 17 6 3.4468 1.5402 -4.7544 18 16 1.9415 0.5674 -5.0514 19 8 2.1100 -0.1765 -6.2504 20 8 0.8139 1.4210 -4.9133 21 6 1.9766 -0.5816 -3.6446 22 1 -0.3634 -1.0200 -0.1249 23 1 -0.3634 0.4018 0.9460 24 1 -0.3634 0.6182 -0.8208 25 1 1.8969 -1.9136 3.4362 26 1 2.9172 -1.1204 -1.0289 27 1 3.5497 1.4061 -1.3178 28 1 4.2199 0.3028 -2.5391 29 1 4.2628 2.7578 -3.1769 30 1 2.4852 2.7057 -3.2201 31 1 4.3218 0.8979 -4.8549 32 1 3.5052 2.3522 -5.4793 33 1 2.8384 -1.2428 -3.7351 34 1 1.0609 -1.1729 -3.6337 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068941588.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:53 Heat of formation + Delta-G solvation = -79.929433 kcal Electronic energy + Delta-G solvation = -16911.017747 eV Core-core repulsion = 14163.764073 eV Total energy + Delta-G solvation = -2747.253674 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.103 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.24984 -36.93478 -36.03929 -34.88390 -32.70016 -30.96116 -28.11501 -27.30974 -24.79062 -22.74079 -20.88450 -19.82897 -18.80296 -17.65965 -16.77332 -16.34223 -15.72142 -15.13892 -14.90206 -14.44165 -13.96745 -13.51635 -13.29080 -13.07723 -12.66981 -12.29254 -12.15593 -12.03466 -11.90767 -11.60364 -11.40091 -11.28228 -11.04169 -10.90226 -10.57573 -10.47730 -10.22186 -10.07192 -9.82463 -9.03435 -8.30916 -7.68787 -6.55805 -4.15636 0.00516 2.62993 3.33977 3.36724 3.54557 3.61163 3.87306 4.42629 4.45054 4.48709 4.69554 4.73609 4.93031 5.03242 5.13841 5.27428 5.37717 5.48682 5.67210 5.74509 5.85677 6.11280 6.15276 6.40512 6.64785 6.72080 6.86855 7.38674 7.62310 7.99037 8.30368 8.35202 8.85698 9.50650 10.81598 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.040537 B = 0.006256 C = 0.006057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.555616 B = 4474.569750 C = 4621.562927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.189 3.811 3 H -0.002 1.002 4 C -0.615 4.615 5 H 0.061 0.939 6 C 0.040 3.960 7 N -0.895 5.895 8 Si 1.035 2.965 9 H -0.284 1.284 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.667 5.667 13 C 0.096 3.904 14 H 0.092 0.908 15 C -0.173 4.173 16 C -0.106 4.106 17 C -0.603 4.603 18 S 2.412 3.588 19 O -0.952 6.952 20 O -0.939 6.939 21 C -0.583 4.583 22 H 0.050 0.950 23 H 0.050 0.950 24 H 0.020 0.980 25 H 0.271 0.729 26 H 0.341 0.659 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.965 5.365 -14.454 15.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.080 3.920 3 H 0.015 0.985 4 C -0.653 4.653 5 H 0.079 0.921 6 C -0.167 4.167 7 N -0.527 5.527 8 Si 0.863 3.137 9 H -0.210 1.210 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.298 5.298 13 C -0.017 4.017 14 H 0.110 0.890 15 C -0.212 4.212 16 C -0.145 4.145 17 C -0.732 4.732 18 S 2.595 3.405 19 O -0.949 6.949 20 O -0.936 6.936 21 C -0.715 4.715 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.039 0.961 25 H 0.081 0.919 26 H 0.159 0.841 27 H 0.109 0.891 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.457 6.352 -14.173 15.724 hybrid contribution 1.720 -0.888 -0.345 1.966 sum 4.177 5.464 -14.517 16.064 Atomic orbital electron populations 1.22104 0.98251 1.00350 0.98876 1.19453 0.92165 0.92545 0.87806 0.98479 1.21998 1.41263 1.10941 0.91052 0.92086 1.25654 0.93236 1.05733 0.92056 1.70835 1.43412 1.06444 1.32007 0.84158 0.77236 0.76024 0.76314 1.20965 1.21128 1.20153 1.60664 1.32842 1.31384 1.04888 1.21248 0.96918 0.93059 0.90443 0.88981 1.22564 0.99425 0.97984 1.01277 1.21232 1.04860 0.98828 0.89620 1.30226 1.21804 1.14791 1.06420 1.08106 0.77593 0.77697 0.77085 1.93575 1.86792 1.71635 1.42868 1.93583 1.47092 1.66010 1.86951 1.30330 1.12155 1.14855 1.14110 0.93099 0.93131 0.96063 0.91943 0.84053 0.89098 0.90777 0.89748 0.89768 0.85106 0.85213 0.85231 0.84156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.09 37.16 0.34 -2.69 16 2 C 0.19 4.24 1.96 -68.87 -0.13 4.10 16 3 H 0.00 -0.05 5.62 -51.93 -0.29 -0.34 16 4 C -0.61 -16.37 8.77 -34.44 -0.30 -16.67 16 5 H 0.06 1.75 7.92 -52.48 -0.42 1.33 16 6 C 0.04 1.12 5.19 -17.82 -0.09 1.02 16 7 N -0.89 -26.53 13.69 55.43 0.76 -25.77 16 8 Si 1.03 24.16 26.46 -169.99 -4.50 19.66 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.04 6.19 56.52 0.35 -5.69 16 12 N -0.67 -12.50 6.04 -101.16 -0.61 -13.11 16 13 C 0.10 1.41 2.11 -67.90 -0.14 1.26 16 14 H 0.09 1.43 7.04 -51.93 -0.37 1.07 16 15 C -0.17 -2.12 4.89 -27.16 -0.13 -2.25 16 16 C -0.11 -1.05 5.73 -26.93 -0.15 -1.20 16 17 C -0.60 -5.13 6.35 37.18 0.24 -4.90 16 18 S 2.41 27.79 5.31 -107.50 -0.57 27.22 16 19 O -0.95 -13.65 18.10 -57.80 -1.05 -14.70 16 20 O -0.94 -14.13 17.93 -57.80 -1.04 -15.17 16 21 C -0.58 -6.94 5.95 37.18 0.22 -6.72 16 22 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 23 H 0.05 1.16 5.52 -51.92 -0.29 0.87 16 24 H 0.02 0.41 7.52 -51.93 -0.39 0.02 16 25 H 0.27 8.01 8.73 -40.82 -0.36 7.65 16 26 H 0.34 6.26 8.01 -39.29 -0.31 5.95 16 27 H 0.09 1.27 7.27 -51.93 -0.38 0.90 16 28 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.86 8.00 -51.93 -0.42 0.44 16 31 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.13 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.14 1.71 8.14 -51.93 -0.42 1.29 16 LS Contribution 280.55 15.07 4.23 4.23 Total: -1.00 -33.37 280.55 -7.96 -41.33 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -5.02 Total: 4.36 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: -0.16 Total: -28.05 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.15 Total: -38.88 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -2.08 Total: -29.87 kcal Atomic # 14 Polarization: 24.16 SS G_CDS: -4.50 Total: 19.66 kcal Atomic # 16 Polarization: 27.79 SS G_CDS: -0.57 Total: 27.22 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -33.37 -7.96 -41.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068941588.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.603 kcal (2) G-P(sol) polarization free energy of solvation -33.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds