Wall clock time and date at job start Mon Mar 30 2020 04:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46503 * 109.47103 * 2 1 4 4 C 1.34772 * 119.99991 * 180.02562 * 3 2 1 5 5 O 1.21551 * 120.00503 * 359.97438 * 4 3 2 6 6 C 1.47867 * 119.99925 * 179.97438 * 4 3 2 7 7 C 1.39766 * 120.07009 * 359.72221 * 6 4 3 8 8 C 1.38147 * 120.16546 * 179.76550 * 7 6 4 9 9 C 1.38026 * 120.30749 * 0.51268 * 8 7 6 10 10 C 1.39806 * 120.13833 * 359.74453 * 9 8 7 11 11 C 1.47845 * 120.08570 * 180.02562 * 10 9 8 12 12 O 1.21756 * 120.00041 * 179.97438 * 11 10 9 13 13 C 1.41810 * 119.99710 * 359.97411 * 11 10 9 14 14 H 1.08001 * 120.00384 * 353.20104 * 13 11 10 15 15 C 1.40349 * 119.99963 * 173.20836 * 13 11 10 16 16 N 1.30541 * 119.99731 * 6.09243 * 15 13 11 17 17 Si 1.86800 * 120.00276 * 186.09869 * 15 13 11 18 18 H 1.48496 * 109.46901 * 94.98064 * 17 15 13 19 19 H 1.48495 * 109.47395 * 214.98398 * 17 15 13 20 20 H 1.48502 * 109.47067 * 334.98437 * 17 15 13 21 21 C 1.39243 * 120.07243 * 180.02562 * 6 4 3 22 22 H 1.09007 * 109.47044 * 299.99839 * 1 2 3 23 23 H 1.09000 * 109.47754 * 59.99683 * 1 2 3 24 24 H 1.09001 * 109.47175 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47749 * 119.99759 * 2 1 3 26 26 H 1.08999 * 109.47192 * 240.00441 * 2 1 3 27 27 H 0.96997 * 120.00126 * 359.97438 * 3 2 1 28 28 H 1.07997 * 119.91334 * 0.02562 * 7 6 4 29 29 H 1.07995 * 119.84159 * 180.25483 * 8 7 6 30 30 H 1.08001 * 119.92710 * 179.72300 * 9 8 7 31 31 H 0.96999 * 119.99681 * 180.02562 * 16 15 13 32 32 H 1.08004 * 120.14916 * 359.95010 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3433 1.6275 -0.0005 5 8 4.1333 0.7037 -0.0005 6 6 3.8362 3.0216 -0.0011 7 6 2.9292 4.0850 -0.0070 8 6 3.3875 5.3883 -0.0026 9 6 4.7427 5.6501 -0.0031 10 6 5.6612 4.5961 -0.0027 11 6 7.1126 4.8779 -0.0026 12 8 7.9112 3.9588 -0.0018 13 6 7.5745 6.2186 -0.0036 14 1 6.8724 7.0317 -0.1152 15 6 8.9442 6.4891 0.1401 16 7 9.8051 5.5079 0.1552 17 14 9.5352 8.2529 0.3100 18 1 9.6791 8.5903 1.7490 19 1 10.8483 8.4024 -0.3672 20 1 8.5480 9.1683 -0.3167 21 6 5.2048 3.2778 -0.0022 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.3880 2.1185 -0.0004 28 1 1.8675 3.8874 -0.0107 29 1 2.6820 6.2060 -0.0030 30 1 5.0942 6.6713 -0.0042 31 1 10.7517 5.6948 0.2549 32 1 5.9098 2.4596 -0.0018 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238259181.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:33 Heat of formation + Delta-G solvation = -61.414465 kcal Electronic energy + Delta-G solvation = -16818.300433 eV Core-core repulsion = 13936.405677 eV Total energy + Delta-G solvation = -2881.894756 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.85085 -38.12003 -36.13905 -35.26438 -32.76164 -31.60086 -30.27112 -29.89149 -26.88274 -24.03471 -23.10327 -22.03639 -20.55769 -19.58140 -17.59210 -16.33366 -16.12499 -15.51041 -15.47389 -15.16819 -14.15836 -14.12633 -13.90839 -13.35436 -13.24020 -12.71647 -12.60711 -12.56099 -12.02254 -11.71468 -11.56113 -11.46005 -11.16573 -10.97750 -10.91353 -10.40217 -10.14338 -9.68547 -9.08726 -9.03514 -8.44546 -8.16230 -7.54230 -6.36969 -4.96521 1.30236 1.79960 3.00558 3.10048 3.13425 3.18338 3.24535 3.96314 4.05768 4.59111 4.75355 4.90572 5.01058 5.13348 5.19241 5.37594 5.60675 5.71733 5.73500 5.78926 5.89234 5.91977 6.05960 6.35625 6.45375 6.55064 6.79164 6.88752 7.19000 7.22164 7.47518 7.59256 7.96537 8.39430 8.73134 8.75866 10.25078 10.46432 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.049560 B = 0.004666 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.835912 B = 5999.265464 C = 6538.909351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.114 3.886 3 N -0.734 5.734 4 C 0.562 3.438 5 O -0.536 6.536 6 C -0.156 4.156 7 C -0.100 4.100 8 C -0.143 4.143 9 C -0.068 4.068 10 C -0.110 4.110 11 C 0.384 3.616 12 O -0.536 6.536 13 C -0.516 4.516 14 H 0.076 0.924 15 C 0.078 3.922 16 N -0.732 5.732 17 Si 0.909 3.091 18 H -0.269 1.269 19 H -0.276 1.276 20 H -0.261 1.261 21 C -0.031 4.031 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.399 0.601 28 H 0.114 0.886 29 H 0.121 0.879 30 H 0.135 0.865 31 H 0.275 0.725 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.743 -1.207 0.044 16.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.010 4.010 3 N -0.389 5.389 4 C 0.350 3.650 5 O -0.413 6.413 6 C -0.159 4.159 7 C -0.119 4.119 8 C -0.161 4.161 9 C -0.086 4.086 10 C -0.111 4.111 11 C 0.280 3.720 12 O -0.425 6.425 13 C -0.547 4.547 14 H 0.094 0.906 15 C -0.146 4.146 16 N -0.360 5.360 17 Si 0.732 3.268 18 H -0.194 1.194 19 H -0.201 1.201 20 H -0.184 1.184 21 C -0.050 4.050 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.234 0.766 28 H 0.132 0.868 29 H 0.139 0.861 30 H 0.153 0.847 31 H 0.087 0.913 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -15.647 -2.460 0.049 15.839 hybrid contribution -0.262 1.316 0.105 1.346 sum -15.909 -1.144 0.154 15.951 Atomic orbital electron populations 1.22003 0.94601 1.03091 1.02475 1.21269 0.93984 0.83248 1.02456 1.45960 1.07175 1.08671 1.77050 1.18471 0.81827 0.89167 0.75498 1.90768 1.55332 1.45949 1.49295 1.19746 0.94798 0.91805 1.09576 1.21124 0.97860 0.92703 1.00208 1.21000 0.95975 0.95960 1.03211 1.21799 0.92064 1.00209 0.94539 1.21972 1.00187 0.91888 0.97065 1.18179 0.83733 0.90455 0.79665 1.90520 1.55625 1.47598 1.48767 1.20922 0.92873 0.94248 1.46638 0.90616 1.26025 0.96840 0.98794 0.92895 1.69968 1.02914 1.33043 1.30123 0.86323 0.78845 0.82379 0.79216 1.19406 1.20095 1.18440 1.21568 0.93426 0.97841 0.92177 0.92000 0.91994 0.90870 0.91539 0.91541 0.76608 0.86786 0.86082 0.84743 0.91346 0.84359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 10.03 37.15 0.37 -0.74 16 2 C 0.11 1.21 6.39 -4.04 -0.03 1.18 16 3 N -0.73 -9.17 5.51 -61.25 -0.34 -9.50 16 4 C 0.56 9.87 7.77 -12.32 -0.10 9.78 16 5 O -0.54 -11.54 16.34 5.32 0.09 -11.46 16 6 C -0.16 -2.86 5.87 -105.01 -0.62 -3.48 16 7 C -0.10 -1.47 9.54 -39.04 -0.37 -1.84 16 8 C -0.14 -2.18 10.02 -39.69 -0.40 -2.58 16 9 C -0.07 -1.29 9.43 -39.07 -0.37 -1.66 16 10 C -0.11 -2.57 5.88 -104.91 -0.62 -3.19 16 11 C 0.38 10.90 6.91 -34.29 -0.24 10.67 16 12 O -0.54 -17.34 14.92 5.14 0.08 -17.26 16 13 C -0.52 -13.93 8.83 -37.42 -0.33 -14.26 16 14 H 0.08 1.82 6.06 -52.49 -0.32 1.50 16 15 C 0.08 2.08 5.50 -17.31 -0.10 1.98 16 16 N -0.73 -21.03 11.76 55.57 0.65 -20.37 16 17 Si 0.91 18.91 29.57 -169.99 -5.03 13.88 16 18 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 19 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 20 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 21 C -0.03 -0.70 9.14 -38.73 -0.35 -1.05 16 22 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.40 3.78 6.50 -40.82 -0.27 3.52 16 28 H 0.11 1.18 6.39 -52.49 -0.34 0.85 16 29 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.13 2.42 6.21 -52.49 -0.33 2.09 16 31 H 0.28 7.07 8.29 -40.82 -0.34 6.73 16 32 H 0.14 3.46 7.23 -52.48 -0.38 3.08 16 LS Contribution 284.17 15.07 4.28 4.28 Total: -1.00 -34.71 284.17 -6.70 -41.41 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -3.29 Total: 4.21 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -3.14 Total: -5.19 kcal Atomic # 7 Polarization: -30.19 SS G_CDS: 0.32 Total: -29.88 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: 0.16 Total: -28.72 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -34.71 -6.70 -41.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238259181.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.004 kcal (2) G-P(sol) polarization free energy of solvation -34.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds