Wall clock time and date at job start Mon Mar 30 2020 04:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00368 * 2 1 4 4 C 1.53002 * 110.45402 * 57.78762 * 3 2 1 5 5 C 1.50701 * 109.46821 * 54.88119 * 4 3 2 6 6 H 1.08007 * 120.00215 * 0.94195 * 5 4 3 7 7 C 1.37879 * 119.99991 * 180.66604 * 5 4 3 8 8 N 1.31515 * 119.99747 * 0.27369 * 7 5 4 9 9 Si 1.86800 * 120.00165 * 180.27479 * 7 5 4 10 10 H 1.48502 * 109.47171 * 60.00092 * 9 7 5 11 11 H 1.48494 * 109.47153 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47091 * 300.00034 * 9 7 5 13 13 C 1.51133 * 110.62855 * 180.46906 * 3 2 1 14 14 C 1.37678 * 132.85627 * 298.66167 * 13 3 2 15 15 C 1.38392 * 119.91319 * 180.02562 * 14 13 3 16 16 C 1.38304 * 119.83242 * 359.97438 * 15 14 13 17 17 C 1.37944 * 120.37055 * 0.03087 * 16 15 14 18 18 C 1.38908 * 106.33841 * 118.70400 * 13 3 2 19 19 N 1.39534 * 110.22728 * 0.02562 * 18 13 3 20 20 C 1.34370 * 112.24782 * 359.97438 * 19 18 13 21 21 O 1.21285 * 126.43690 * 179.97438 * 20 19 18 22 22 H 1.08999 * 109.46931 * 305.75430 * 1 2 3 23 23 H 1.08998 * 109.46898 * 65.75323 * 1 2 3 24 24 H 1.08995 * 109.47732 * 185.75455 * 1 2 3 25 25 H 1.08993 * 109.47238 * 294.88356 * 4 3 2 26 26 H 1.09006 * 109.47210 * 174.87695 * 4 3 2 27 27 H 0.97007 * 119.99516 * 179.97438 * 8 7 5 28 28 H 1.07992 * 120.04160 * 0.02562 * 14 13 3 29 29 H 1.07997 * 120.08463 * 179.97438 * 15 14 13 30 30 H 1.07997 * 119.82040 * 180.02562 * 16 15 14 31 31 H 1.07997 * 119.93216 * 179.97438 * 17 16 15 32 32 H 0.97002 * 123.87318 * 179.97438 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5297 2.1047 1.2129 5 6 1.8196 1.3294 2.4723 6 1 2.3124 0.3701 2.4145 7 6 1.4608 1.8474 3.6987 8 7 0.8608 3.0155 3.7690 9 14 1.8270 0.8899 5.2603 10 1 3.2916 0.6741 5.3766 11 1 1.3455 1.6581 6.4363 12 1 1.1356 -0.4234 5.2093 13 6 3.5190 1.2165 -0.0116 14 6 4.4319 0.6752 0.8654 15 6 5.7850 0.7456 0.5838 16 6 6.2148 1.3594 -0.5786 17 6 5.3022 1.9027 -1.4590 18 6 3.9380 1.8365 -1.1819 19 7 2.8374 2.3039 -1.9009 20 6 1.6747 2.0358 -1.2829 21 8 0.5653 2.3253 -1.6782 22 1 -0.3633 0.6005 0.8340 23 1 -0.3633 0.4220 -0.9370 24 1 -0.3634 -1.0224 0.1030 25 1 0.4567 2.2781 1.1319 26 1 2.0508 3.0615 1.2472 27 1 0.6080 3.3797 4.6318 28 1 4.0925 0.1963 1.7719 29 1 6.5035 0.3222 1.2700 30 1 7.2708 1.4139 -0.7984 31 1 5.6457 2.3807 -2.3644 32 1 2.9039 2.7690 -2.7496 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238424572.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:38 Heat of formation + Delta-G solvation = -59.135208 kcal Electronic energy + Delta-G solvation = -18281.355543 eV Core-core repulsion = 15399.559623 eV Total energy + Delta-G solvation = -2881.795920 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.77055 -39.54009 -38.52072 -36.65363 -35.20356 -33.06317 -30.85865 -30.01587 -28.39529 -27.13672 -24.63965 -23.50848 -22.42813 -21.35262 -19.00441 -18.63402 -17.91615 -17.63193 -16.97292 -16.65641 -16.22162 -15.74882 -15.29672 -15.25301 -14.78373 -14.60102 -14.23538 -13.90556 -13.44768 -13.26465 -13.14345 -12.61796 -12.59625 -12.49565 -12.09950 -11.86166 -11.76505 -11.65845 -11.04183 -10.58387 -10.30128 -9.71570 -8.99776 -8.19272 -6.28829 0.14945 0.50575 1.29879 1.42851 1.45816 1.53300 1.91147 2.42159 2.80483 3.04831 3.06923 3.14972 3.59647 4.00042 4.22215 4.35081 4.48944 4.53958 4.58244 4.67437 4.69036 4.82477 5.07477 5.15716 5.22492 5.32861 5.50513 5.62924 5.70613 5.74621 5.80352 6.03797 6.15156 6.17700 6.79753 6.86646 7.38473 8.93270 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.019723 B = 0.010174 C = 0.007790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.289191 B = 2751.446289 C = 3593.474788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.358 6.358 3 C 0.128 3.872 4 C 0.033 3.967 5 C -0.507 4.507 6 H 0.073 0.927 7 C 0.003 3.997 8 N -0.936 5.936 9 Si 0.963 3.037 10 H -0.258 1.258 11 H -0.288 1.288 12 H -0.268 1.268 13 C -0.132 4.132 14 C -0.059 4.059 15 C -0.141 4.141 16 C -0.077 4.077 17 C -0.133 4.133 18 C 0.120 3.880 19 N -0.643 5.643 20 C 0.503 3.497 21 O -0.530 6.530 22 H 0.036 0.964 23 H 0.041 0.959 24 H 0.111 0.889 25 H 0.000 1.000 26 H -0.002 1.002 27 H 0.263 0.737 28 H 0.119 0.881 29 H 0.156 0.844 30 H 0.174 0.826 31 H 0.162 0.838 32 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.732 -4.493 -8.925 15.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.276 6.276 3 C 0.085 3.915 4 C -0.004 4.004 5 C -0.545 4.545 6 H 0.091 0.909 7 C -0.195 4.195 8 N -0.576 5.576 9 Si 0.787 3.213 10 H -0.183 1.183 11 H -0.214 1.214 12 H -0.193 1.193 13 C -0.135 4.135 14 C -0.078 4.078 15 C -0.159 4.159 16 C -0.095 4.095 17 C -0.153 4.153 18 C 0.024 3.976 19 N -0.289 5.289 20 C 0.290 3.710 21 O -0.407 6.407 22 H 0.055 0.945 23 H 0.060 0.940 24 H 0.129 0.871 25 H 0.018 0.982 26 H 0.016 0.984 27 H 0.072 0.928 28 H 0.137 0.863 29 H 0.173 0.827 30 H 0.191 0.809 31 H 0.179 0.821 32 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 11.076 -4.424 -8.955 14.914 hybrid contribution -0.958 0.520 0.568 1.229 sum 10.117 -3.904 -8.387 13.709 Atomic orbital electron populations 1.22890 0.80348 1.03501 1.00238 1.87906 1.20997 1.24091 1.94655 1.20945 0.92396 0.85527 0.92582 1.19241 0.94954 0.94341 0.91868 1.21167 1.38427 1.04785 0.90143 0.90916 1.25917 0.94894 0.95861 1.02783 1.70117 1.41950 1.19462 1.26063 0.85525 0.79486 0.78461 0.77832 1.18262 1.21364 1.19348 1.19519 0.92020 1.04933 0.97003 1.20656 0.93112 0.96490 0.97516 1.21473 0.93934 1.01462 0.99075 1.21355 1.00926 0.94794 0.92407 1.20737 0.87266 1.04331 1.03003 1.18505 0.89642 0.98177 0.91270 1.43413 1.05130 1.56073 1.24266 1.21695 0.83922 0.78568 0.86793 1.90673 1.23584 1.54907 1.71539 0.94538 0.94032 0.87114 0.98218 0.98394 0.92839 0.86293 0.82653 0.80871 0.82094 0.73544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.10 10.27 113.37 1.16 2.27 16 2 O -0.36 -16.40 9.82 -148.98 -1.46 -17.86 16 3 C 0.13 5.92 0.68 -11.93 -0.01 5.91 16 4 C 0.03 1.84 3.54 29.85 0.11 1.94 16 5 C -0.51 -28.12 7.66 25.60 0.20 -27.93 16 6 H 0.07 3.88 5.84 -2.91 -0.02 3.86 16 7 C 0.00 0.17 5.46 84.65 0.46 0.64 16 8 N -0.94 -56.82 13.29 21.45 0.28 -56.53 16 9 Si 0.96 43.48 29.54 68.60 2.03 45.50 16 10 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 11 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 13 C -0.13 -5.25 5.22 -19.70 -0.10 -5.36 16 14 C -0.06 -2.11 9.35 22.17 0.21 -1.90 16 15 C -0.14 -3.55 10.07 22.32 0.22 -3.32 16 16 C -0.08 -1.53 10.02 22.22 0.22 -1.31 16 17 C -0.13 -3.01 10.07 22.47 0.23 -2.79 16 18 C 0.12 3.88 7.11 38.35 0.27 4.16 16 19 N -0.64 -21.46 5.88 -303.21 -1.78 -23.24 16 20 C 0.50 21.77 7.35 87.94 0.65 22.41 16 21 O -0.53 -25.15 16.24 -3.04 -0.05 -25.20 16 22 H 0.04 1.73 6.20 -2.39 -0.01 1.71 16 23 H 0.04 1.73 6.40 -2.39 -0.02 1.72 16 24 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 25 H 0.00 -0.02 6.77 -2.39 -0.02 -0.04 16 26 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 27 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 28 H 0.12 4.61 6.29 -2.91 -0.02 4.59 16 29 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 30 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 31 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 32 H 0.42 10.71 8.96 -92.71 -0.83 9.88 16 Total: -1.00 -72.25 272.10 2.96 -69.29 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.33 Total: 13.32 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 3.62 Total: -5.28 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -1.50 Total: -79.77 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -1.51 Total: -43.06 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -72.25 2.96 -69.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238424572.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.152 kcal (2) G-P(sol) polarization free energy of solvation -72.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds