Wall clock time and date at job start Mon Mar 30 2020 03:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47069 * 2 1 4 4 H 1.09000 * 109.47486 * 305.00460 * 3 2 1 5 5 C 1.50697 * 109.46961 * 185.00027 * 3 2 1 6 6 H 1.07998 * 120.00039 * 239.99932 * 5 3 2 7 7 C 1.37881 * 120.00021 * 60.00943 * 5 3 2 8 8 N 1.31512 * 119.99560 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00032 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47419 * 89.99289 * 9 7 5 11 11 H 1.48499 * 109.47011 * 209.99851 * 9 7 5 12 12 H 1.48506 * 109.46838 * 329.99138 * 9 7 5 13 13 C 1.53006 * 109.46623 * 65.00288 * 3 2 1 14 14 C 1.53937 * 113.74276 * 276.67150 * 13 3 2 15 15 N 1.47577 * 86.12071 * 222.04937 * 14 13 3 16 16 S 1.65596 * 134.49764 * 204.64037 * 15 14 13 17 17 C 1.81399 * 104.45102 * 269.99991 * 16 15 14 18 18 O 1.42106 * 104.27325 * 26.07220 * 16 15 14 19 19 O 1.42097 * 104.28182 * 153.92548 * 16 15 14 20 20 C 1.47585 * 91.01284 * 24.64079 * 15 14 13 21 21 H 1.09000 * 109.47048 * 299.99452 * 1 2 3 22 22 H 1.08994 * 109.47199 * 59.99565 * 1 2 3 23 23 H 1.09001 * 109.46743 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47048 * 240.00548 * 2 1 3 25 25 H 1.08994 * 109.47199 * 120.00435 * 2 1 3 26 26 H 0.97002 * 119.99397 * 179.97438 * 8 7 5 27 27 H 1.08995 * 112.94199 * 48.40805 * 13 3 2 28 28 H 1.09003 * 113.77295 * 336.35252 * 14 13 3 29 29 H 1.09004 * 113.77134 * 107.74894 * 14 13 3 30 30 H 1.09007 * 109.47153 * 59.99986 * 17 16 15 31 31 H 1.09005 * 109.47221 * 179.97438 * 17 16 15 32 32 H 1.09002 * 109.47245 * 300.00055 * 17 16 15 33 33 H 1.09000 * 113.77328 * 221.06020 * 20 15 14 34 34 H 1.09003 * 113.87223 * 89.67247 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8785 -1.2281 8 7 3.4061 0.3369 -2.1730 9 14 6.0049 0.8801 -1.3813 10 1 6.5538 -0.3520 -0.7600 11 1 6.3835 0.9217 -2.8166 12 1 6.5575 2.0720 -0.6889 13 6 1.6352 2.1264 1.3075 14 6 0.2022 2.6884 1.2951 15 7 0.7668 3.8696 1.9762 16 16 0.1506 5.0392 2.9736 17 6 -0.4023 6.3493 1.8473 18 8 -0.9631 4.4157 3.5983 19 8 1.2684 5.4751 3.7350 20 6 2.1013 3.5900 1.4115 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.8292 -0.0608 -2.9500 27 1 1.8664 1.5285 2.1890 28 1 -0.1790 2.8980 0.2957 29 1 -0.4978 2.1206 1.9082 30 1 -1.1588 5.9515 1.1707 31 1 -0.8276 7.1698 2.4253 32 1 0.4469 6.7136 1.2690 33 1 2.9178 3.7419 2.1174 34 1 2.2800 4.0638 0.4462 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260357400.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:02 Heat of formation + Delta-G solvation = -69.159536 kcal Electronic energy + Delta-G solvation = -16796.843447 eV Core-core repulsion = 14050.056791 eV Total energy + Delta-G solvation = -2746.786656 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.103 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.32424 -38.10835 -36.98061 -36.13601 -33.46503 -30.43151 -30.10294 -27.96872 -26.73210 -24.94983 -22.12134 -20.59611 -19.59950 -18.43176 -18.33715 -17.30930 -17.01746 -16.54825 -15.77310 -15.26700 -15.03119 -14.38508 -14.05540 -13.95594 -13.87692 -13.53996 -13.30452 -13.17682 -13.10117 -13.05254 -12.79344 -12.73008 -12.31198 -12.21119 -12.00397 -11.85380 -11.44283 -11.28175 -10.68786 -10.45192 -10.27603 -9.81493 -7.97810 -6.08947 -0.66739 1.45846 1.49499 1.56648 1.65111 2.51030 2.99969 3.08090 3.30209 3.81049 3.97117 4.11251 4.12997 4.32187 4.69165 4.74273 4.75154 4.78914 4.91201 4.91523 4.96947 5.05444 5.18745 5.30412 5.47677 5.62208 5.66746 5.74067 5.83696 6.16016 6.28692 6.54427 7.03532 7.58443 9.05309 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.030720 B = 0.006527 C = 0.005746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.236082 B = 4288.688313 C = 4871.869152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C 0.060 3.940 4 H 0.014 0.986 5 C -0.520 4.520 6 H 0.054 0.946 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.940 3.060 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.268 1.268 13 C -0.102 4.102 14 C 0.131 3.869 15 N -1.042 6.042 16 S 2.630 3.370 17 C -0.653 4.653 18 O -0.994 6.994 19 O -0.999 6.999 20 C 0.139 3.861 21 H 0.062 0.938 22 H 0.045 0.955 23 H 0.043 0.957 24 H 0.058 0.942 25 H 0.024 0.976 26 H 0.257 0.743 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.141 0.859 33 H 0.070 0.930 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.861 8.852 4.139 12.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.156 4.156 3 C 0.041 3.959 4 H 0.032 0.968 5 C -0.558 4.558 6 H 0.073 0.927 7 C -0.182 4.182 8 N -0.555 5.555 9 Si 0.767 3.233 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.193 1.193 13 C -0.124 4.124 14 C 0.006 3.994 15 N -0.881 5.881 16 S 2.730 3.270 17 C -0.806 4.806 18 O -0.985 6.985 19 O -0.990 6.990 20 C 0.014 3.986 21 H 0.081 0.919 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.043 0.957 26 H 0.066 0.934 27 H 0.096 0.904 28 H 0.114 0.886 29 H 0.103 0.897 30 H 0.163 0.837 31 H 0.165 0.835 32 H 0.160 0.840 33 H 0.089 0.911 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.973 8.913 5.089 12.996 hybrid contribution 1.116 0.027 -0.903 1.436 sum -6.857 8.940 4.186 12.019 Atomic orbital electron populations 1.21866 0.96415 1.00499 1.01220 1.21487 0.94278 0.99613 1.00193 1.18640 0.93876 0.92269 0.91115 0.96754 1.21565 0.93302 1.36407 1.04557 0.92726 1.25578 1.01098 0.95540 0.95989 1.69998 1.35858 1.39713 1.09908 0.85840 0.82333 0.78340 0.76784 1.20995 1.21507 1.19297 1.23128 0.94627 0.94952 0.99654 1.23091 0.96855 0.82566 0.96876 1.60163 1.21164 1.40980 1.65765 1.04014 0.72773 0.75042 0.75178 1.30395 1.14087 1.18430 1.17726 1.93528 1.55096 1.75180 1.74730 1.93529 1.52939 1.83203 1.69294 1.22721 0.83309 0.94888 0.97696 0.91872 0.93610 0.93825 0.92332 0.95732 0.93392 0.90378 0.88600 0.89685 0.83681 0.83496 0.84042 0.91125 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.90 9.28 71.98 0.67 -4.23 16 2 C -0.12 -5.12 5.24 30.59 0.16 -4.96 16 3 C 0.06 2.65 1.63 -11.54 -0.02 2.63 16 4 H 0.01 0.68 7.94 -2.39 -0.02 0.66 16 5 C -0.52 -26.08 8.13 25.60 0.21 -25.87 16 6 H 0.05 2.70 7.54 -2.91 -0.02 2.68 16 7 C 0.02 0.85 5.29 84.66 0.45 1.30 16 8 N -0.91 -49.98 11.29 21.45 0.24 -49.74 16 9 Si 0.94 41.91 29.54 68.60 2.03 43.94 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 12 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 13 C -0.10 -3.69 3.02 -10.13 -0.03 -3.73 16 14 C 0.13 3.82 6.46 86.48 0.56 4.38 16 15 N -1.04 -29.94 3.99 -529.62 -2.12 -32.06 16 16 S 2.63 67.78 6.57 -56.49 -0.37 67.40 16 17 C -0.65 -9.64 10.99 113.37 1.25 -8.39 16 18 O -0.99 -31.65 18.02 -127.65 -2.30 -33.95 16 19 O -1.00 -33.19 18.02 -127.65 -2.30 -35.49 16 20 C 0.14 4.55 7.80 86.48 0.67 5.22 16 21 H 0.06 1.89 5.22 -2.39 -0.01 1.88 16 22 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.06 2.97 5.95 -2.39 -0.01 2.96 16 25 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 27 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 28 H 0.10 2.51 7.96 -2.39 -0.02 2.49 16 29 H 0.08 2.34 7.24 -2.39 -0.02 2.32 16 30 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.15 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.07 2.35 8.14 -2.39 -0.02 2.34 16 34 H 0.09 2.86 8.10 -2.39 -0.02 2.85 16 Total: -1.00 -65.87 290.00 0.17 -65.70 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 1.07 Total: 7.84 kcal Atomic # 6 Polarization: -37.56 SS G_CDS: 3.91 Total: -33.64 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -1.87 Total: -81.79 kcal Atomic # 8 Polarization: -64.84 SS G_CDS: -4.60 Total: -69.44 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 16 Polarization: 67.78 SS G_CDS: -0.37 Total: 67.40 kcal Total: -65.87 0.17 -65.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260357400.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.460 kcal (2) G-P(sol) polarization free energy of solvation -65.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds