Wall clock time and date at job start Mon Mar 30 2020 04:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35907 * 116.99984 * 2 1 4 4 C 1.38840 * 119.99217 * 359.97438 * 3 2 1 5 5 C 1.38226 * 120.22274 * 179.97438 * 4 3 2 6 6 C 1.38026 * 120.19879 * 0.02562 * 5 4 3 7 7 C 1.39493 * 119.97360 * 359.97438 * 6 5 4 8 8 C 1.48008 * 120.10728 * 179.97438 * 7 6 5 9 9 N 1.29627 * 123.08554 * 0.02562 * 8 7 6 10 10 C 1.47590 * 108.44654 * 180.37358 * 9 8 7 11 11 H 1.09007 * 110.92226 * 256.83851 * 10 9 8 12 12 C 1.50696 * 110.93017 * 133.22771 * 10 9 8 13 13 H 1.07997 * 120.00012 * 244.37237 * 12 10 9 14 14 C 1.37877 * 119.99842 * 64.36764 * 12 10 9 15 15 N 1.31516 * 120.00069 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99806 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46845 * 90.00621 * 16 14 12 18 18 H 1.48503 * 109.47399 * 210.00111 * 16 14 12 19 19 H 1.48498 * 109.47295 * 330.00717 * 16 14 12 20 20 C 1.54818 * 102.03588 * 15.03043 * 10 9 8 21 21 O 1.34938 * 123.08385 * 179.97438 * 8 7 6 22 22 C 1.38479 * 119.98496 * 180.25931 * 3 2 1 23 23 H 1.09001 * 109.47266 * 299.99853 * 1 2 3 24 24 H 1.09000 * 109.47557 * 59.99361 * 1 2 3 25 25 H 1.08999 * 109.47480 * 179.97438 * 1 2 3 26 26 H 1.08000 * 119.88503 * 359.97438 * 4 3 2 27 27 H 1.07998 * 119.89869 * 180.02562 * 5 4 3 28 28 H 1.08006 * 120.01226 * 179.97438 * 6 5 4 29 29 H 0.97000 * 119.99838 * 359.97438 * 15 14 12 30 30 H 1.09002 * 111.04765 * 94.56195 * 20 10 9 31 31 H 1.09000 * 111.04753 * 218.51975 * 20 10 9 32 32 H 1.07999 * 120.10076 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2896 2.3753 -0.0005 5 6 1.9122 3.6094 0.0000 6 6 3.2900 3.6919 0.0005 7 6 4.0579 2.5274 0.0011 8 6 5.5355 2.6125 0.0011 9 7 6.1795 3.7375 0.0011 10 6 7.6266 3.4472 -0.0081 11 1 8.0595 3.5948 0.9815 12 6 8.3382 4.2899 -1.0349 13 1 8.8207 3.8195 -1.8790 14 6 8.3733 5.6613 -0.8970 15 7 7.7861 6.2339 0.1311 16 14 9.2548 6.7058 -2.1703 17 1 8.3017 7.0870 -3.2434 18 1 9.7870 7.9316 -1.5226 19 1 10.3762 5.9292 -2.7572 20 6 7.6533 1.9512 -0.4057 21 8 6.3359 1.5261 0.0021 22 6 3.4289 1.2831 -0.0054 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 0.2112 2.3164 -0.0014 27 1 1.3187 4.5117 0.0000 28 1 3.7733 4.6578 0.0005 29 1 7.3281 5.6915 0.7921 30 1 7.7870 1.8344 -1.4812 31 1 8.4261 1.4138 0.1438 32 1 4.0184 0.3782 -0.0101 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260715203.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:43 Heat of formation + Delta-G solvation = -23.307962 kcal Electronic energy + Delta-G solvation = -17179.773582 eV Core-core repulsion = 14299.531248 eV Total energy + Delta-G solvation = -2880.242334 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.32155 -39.72503 -37.24068 -33.76116 -32.17699 -31.21535 -30.18526 -28.35968 -27.32499 -24.54991 -23.12283 -22.29814 -21.15923 -19.76789 -17.81820 -17.06809 -16.16762 -15.91550 -15.76867 -15.63830 -14.98835 -14.41875 -13.75723 -13.62015 -13.51951 -13.06651 -12.81491 -12.55105 -12.03636 -11.55584 -11.48361 -11.41715 -10.89411 -10.84616 -10.77116 -10.56917 -10.10229 -9.32818 -9.08948 -8.87011 -8.47492 -8.18508 -7.69775 -6.41016 -4.19481 1.12683 1.59389 3.14312 3.21202 3.41812 3.45017 3.60121 3.90223 4.16580 4.49563 4.79256 4.88063 5.01007 5.04357 5.10192 5.30664 5.46441 5.52213 5.56537 5.65835 5.85239 5.91166 6.06091 6.22237 6.32444 6.40999 6.62912 6.78028 6.82536 6.97900 7.27751 7.41645 7.95768 8.27215 8.66523 8.83287 9.61905 11.01184 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.037973 B = 0.005260 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.184346 B = 5322.330743 C = 5797.902320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.116 3.884 4 C -0.202 4.202 5 C -0.086 4.086 6 C -0.108 4.108 7 C 0.026 3.974 8 C 0.271 3.729 9 N -0.469 5.469 10 C 0.139 3.861 11 H 0.054 0.946 12 C -0.605 4.605 13 H 0.057 0.943 14 C 0.035 3.965 15 N -0.886 5.886 16 Si 1.073 2.927 17 H -0.287 1.287 18 H -0.283 1.283 19 H -0.288 1.288 20 C 0.032 3.968 21 O -0.362 6.362 22 C -0.123 4.123 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.097 0.903 26 H 0.126 0.874 27 H 0.129 0.871 28 H 0.142 0.858 29 H 0.282 0.718 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.196 -8.965 -0.127 15.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.071 3.929 4 C -0.221 4.221 5 C -0.105 4.105 6 C -0.128 4.128 7 C 0.024 3.976 8 C 0.045 3.955 9 N -0.201 5.201 10 C 0.032 3.968 11 H 0.071 0.929 12 C -0.643 4.643 13 H 0.075 0.925 14 C -0.174 4.174 15 N -0.518 5.518 16 Si 0.901 3.099 17 H -0.213 1.213 18 H -0.208 1.208 19 H -0.214 1.214 20 C -0.045 4.045 21 O -0.268 6.268 22 C -0.144 4.144 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.115 0.885 26 H 0.144 0.856 27 H 0.147 0.853 28 H 0.160 0.840 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.742 -6.879 -0.436 14.487 hybrid contribution -0.191 -2.167 0.292 2.195 sum -12.933 -9.046 -0.144 15.784 Atomic orbital electron populations 1.23013 0.78742 1.03646 1.01254 1.86066 1.21060 1.26954 1.89151 1.18759 0.91879 0.84131 0.98119 1.21273 0.99784 0.92409 1.08658 1.20851 0.94186 0.96992 0.98423 1.21273 0.93115 0.98738 0.99658 1.17597 0.87268 0.92953 0.99752 1.23147 0.91260 0.83519 0.97543 1.75314 1.08708 1.23480 1.12593 1.21424 0.86218 0.90060 0.99049 0.92873 1.21646 1.37806 0.93909 1.10949 0.92502 1.25819 0.95971 0.95860 0.99756 1.70608 1.30226 1.40098 1.10906 0.83500 0.75839 0.75623 0.74948 1.21340 1.20827 1.21424 1.24598 0.81453 0.98100 1.00317 1.86831 1.21682 1.34740 1.83541 1.20462 0.91331 0.98138 1.04470 0.92758 0.92758 0.88477 0.85569 0.85279 0.83979 0.90662 0.90853 0.89076 0.84477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.16 10.49 -19.45 -0.20 -4.36 16 3 C 0.12 1.69 6.68 -39.27 -0.26 1.43 16 4 C -0.20 -2.58 9.03 -39.36 -0.36 -2.94 16 5 C -0.09 -1.20 10.03 -39.66 -0.40 -1.59 16 6 C -0.11 -1.89 9.63 -39.19 -0.38 -2.27 16 7 C 0.03 0.49 5.87 -104.98 -0.62 -0.12 16 8 C 0.27 6.16 7.59 -14.48 -0.11 6.05 16 9 N -0.47 -12.14 9.83 -52.38 -0.51 -12.65 16 10 C 0.14 3.65 3.08 -67.53 -0.21 3.44 16 11 H 0.05 1.47 8.01 -51.92 -0.42 1.05 16 12 C -0.60 -17.15 8.78 -34.44 -0.30 -17.46 16 13 H 0.06 1.58 7.63 -52.49 -0.40 1.18 16 14 C 0.04 1.02 5.43 -17.82 -0.10 0.92 16 15 N -0.89 -26.99 13.58 55.43 0.75 -26.24 16 16 Si 1.07 25.15 29.90 -169.99 -5.08 20.07 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 20 C 0.03 0.71 7.71 38.12 0.29 1.00 16 21 O -0.36 -8.02 10.68 -16.53 -0.18 -8.20 16 22 C -0.12 -2.09 9.61 -39.05 -0.38 -2.46 16 23 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 24 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 25 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.13 1.21 6.28 -52.49 -0.33 0.88 16 27 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 28 H 0.14 2.70 7.70 -52.48 -0.40 2.30 16 29 H 0.28 8.71 6.63 -40.82 -0.27 8.44 16 30 H 0.07 1.60 7.79 -51.93 -0.40 1.20 16 31 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 32 H 0.14 2.28 7.77 -52.49 -0.41 1.88 16 LS Contribution 280.54 15.07 4.23 4.23 Total: -1.00 -32.52 280.54 -6.31 -38.83 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -3.49 Total: 1.10 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -1.82 Total: -12.77 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.24 Total: -38.89 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.38 Total: -12.56 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.08 Total: 20.07 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.52 -6.31 -38.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260715203.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.519 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds