Wall clock time and date at job start Mon Mar 30 2020 04:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.34977 * 116.99615 * 2 1 4 4 O 1.21704 * 120.00524 * 0.02562 * 3 2 1 5 5 C 1.41197 * 119.99513 * 179.97438 * 3 2 1 6 6 C 1.35045 * 120.00176 * 185.50061 * 5 3 2 7 7 N 1.36686 * 119.99600 * 353.75870 * 6 5 3 8 8 C 1.39781 * 119.99625 * 185.38559 * 7 6 5 9 9 C 1.39331 * 119.95243 * 0.02562 * 8 7 6 10 10 C 1.38475 * 120.42269 * 180.02562 * 9 8 7 11 11 C 1.37691 * 120.32590 * 0.25411 * 10 9 8 12 12 C 1.40748 * 119.89532 * 359.43379 * 11 10 9 13 13 C 1.41401 * 120.21192 * 180.32009 * 12 11 10 14 14 H 1.07999 * 120.00430 * 209.22588 * 13 12 11 15 15 C 1.39939 * 120.00084 * 29.22514 * 13 12 11 16 16 N 1.30834 * 119.99820 * 10.06620 * 15 13 12 17 17 Si 1.86798 * 120.00180 * 190.07235 * 15 13 12 18 18 H 1.48500 * 109.47194 * 59.99571 * 17 15 13 19 19 H 1.48501 * 109.47153 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46899 * 299.99863 * 17 15 13 21 21 C 1.38282 * 119.94673 * 179.97438 * 8 7 6 22 22 H 1.09001 * 109.47273 * 59.98980 * 1 2 3 23 23 H 1.08994 * 109.47531 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.46881 * 299.99791 * 1 2 3 25 25 H 1.08009 * 120.00078 * 5.50493 * 5 3 2 26 26 H 1.08000 * 120.00220 * 173.75569 * 6 5 3 27 27 H 0.96999 * 120.00056 * 5.38984 * 7 6 5 28 28 H 1.07995 * 119.78785 * 0.02562 * 9 8 7 29 29 H 1.08003 * 119.83539 * 179.97438 * 10 9 8 30 30 H 1.08001 * 120.04823 * 179.70632 * 11 10 9 31 31 H 0.96995 * 119.99848 * 179.97438 * 16 15 13 32 32 H 1.08000 * 120.16974 * 359.97438 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0418 1.2027 0.0000 4 8 1.3789 2.2234 0.0005 5 6 3.4518 1.2766 0.0005 6 6 4.0652 2.4744 0.1127 7 7 3.3266 3.6245 0.0972 8 6 3.9675 4.8667 0.0996 9 6 5.3592 4.9314 0.1174 10 6 6.0042 6.1568 0.1205 11 6 5.2764 7.3256 0.1114 12 6 3.8700 7.2760 0.0868 13 6 3.1160 8.4721 0.0704 14 1 2.1297 8.4949 0.5097 15 6 3.6479 9.6266 -0.5149 16 7 4.7495 9.5559 -1.2172 17 14 2.7853 11.2686 -0.2934 18 1 2.7144 11.5995 1.1525 19 1 3.5448 12.3269 -1.0064 20 1 1.4110 11.1847 -0.8499 21 6 3.2193 6.0295 0.0834 22 1 -0.3634 0.5140 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 4.0399 0.3750 -0.0888 26 1 5.1392 2.5237 0.2146 27 1 2.3578 3.5786 0.0845 28 1 5.9386 4.0201 0.1287 29 1 7.0834 6.1959 0.1347 30 1 5.7840 8.2788 0.1187 31 1 5.1180 10.3560 -1.6233 32 1 2.1405 5.9806 0.0684 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313434594.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:41 Heat of formation + Delta-G solvation = -57.908616 kcal Electronic energy + Delta-G solvation = -16804.359997 eV Core-core repulsion = 13922.617266 eV Total energy + Delta-G solvation = -2881.742731 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.72336 -40.12731 -38.25031 -36.88182 -35.23357 -32.78182 -31.82100 -29.63349 -28.20253 -27.32340 -24.67489 -23.07358 -22.42603 -21.07950 -19.69915 -18.66837 -17.66022 -17.47328 -17.33433 -16.89155 -16.56577 -15.61328 -15.03063 -14.77876 -14.71890 -14.28331 -14.16147 -14.06109 -13.84910 -13.27096 -12.88038 -12.85541 -12.78827 -12.30750 -12.13264 -11.81226 -11.71362 -11.48682 -11.15586 -11.07634 -9.95351 -9.43900 -8.63981 -8.26276 -6.44383 0.11919 0.93169 1.25677 1.37862 1.49197 1.53163 2.13322 2.20125 2.24154 2.51488 2.75519 3.68897 3.92621 4.32557 4.33424 4.36073 4.50205 4.58186 4.74150 4.79987 4.91581 5.00464 5.05814 5.22400 5.26350 5.34505 5.59675 5.73645 5.92439 6.05529 6.17171 6.47785 6.68127 6.69755 6.90821 6.96853 7.02253 8.33815 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.034850 B = 0.004638 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.241484 B = 6035.920726 C = 6753.550556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.500 3.500 4 O -0.587 6.587 5 C -0.380 4.380 6 C 0.246 3.754 7 N -0.636 5.636 8 C 0.160 3.840 9 C -0.266 4.266 10 C -0.079 4.079 11 C -0.199 4.199 12 C 0.104 3.896 13 C -0.503 4.503 14 H 0.071 0.929 15 C 0.036 3.964 16 N -0.827 5.827 17 Si 0.985 3.015 18 H -0.260 1.260 19 H -0.264 1.264 20 H -0.264 1.264 21 C -0.276 4.276 22 H 0.051 0.949 23 H 0.133 0.867 24 H 0.051 0.949 25 H 0.175 0.825 26 H 0.195 0.805 27 H 0.416 0.584 28 H 0.141 0.859 29 H 0.127 0.873 30 H 0.107 0.893 31 H 0.289 0.711 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.548 -12.043 1.707 12.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.357 3.643 4 O -0.484 6.484 5 C -0.408 4.408 6 C 0.111 3.889 7 N -0.264 5.264 8 C 0.064 3.936 9 C -0.287 4.287 10 C -0.098 4.098 11 C -0.219 4.219 12 C 0.101 3.899 13 C -0.533 4.533 14 H 0.089 0.911 15 C -0.179 4.179 16 N -0.453 5.453 17 Si 0.805 3.195 18 H -0.184 1.184 19 H -0.188 1.188 20 H -0.189 1.189 21 C -0.298 4.298 22 H 0.069 0.931 23 H 0.151 0.849 24 H 0.070 0.930 25 H 0.193 0.807 26 H 0.212 0.788 27 H 0.269 0.731 28 H 0.159 0.841 29 H 0.145 0.855 30 H 0.125 0.875 31 H 0.099 0.901 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.609 -11.552 1.560 11.673 hybrid contribution -1.156 0.936 -0.065 1.489 sum -1.765 -10.616 1.495 10.865 Atomic orbital electron populations 1.23054 0.76514 1.05244 1.01714 1.86206 1.24003 1.32345 1.84877 1.20389 0.90636 0.80775 0.72503 1.90319 1.68166 1.36031 1.53882 1.20456 0.90232 0.99424 1.30711 1.22526 0.99463 0.84098 0.82830 1.44012 1.12737 1.03124 1.66504 1.17876 0.92753 0.84221 0.98722 1.20521 0.90980 0.98498 1.18710 1.20892 0.99237 0.91998 0.97670 1.21383 0.94000 0.97780 1.08701 1.17725 0.93036 0.91902 0.87255 1.19796 1.02917 0.95205 1.35385 0.91120 1.26709 0.95231 1.04051 0.91897 1.69833 1.19318 1.32289 1.23898 0.85213 0.78831 0.75734 0.79679 1.18392 1.18829 1.18865 1.20725 0.97459 0.92059 1.19563 0.93053 0.84944 0.92984 0.80712 0.78849 0.73079 0.84120 0.85484 0.87534 0.90060 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.45 113.37 1.18 1.79 16 2 O -0.36 -9.69 10.46 -58.95 -0.62 -10.31 16 3 C 0.50 15.80 7.67 68.55 0.53 16.33 16 4 O -0.59 -22.26 13.08 19.17 0.25 -22.01 16 5 C -0.38 -10.03 9.97 22.26 0.22 -9.81 16 6 C 0.25 6.92 10.09 83.20 0.84 7.76 16 7 N -0.64 -23.82 5.31 -187.24 -0.99 -24.81 16 8 C 0.16 6.94 6.61 38.15 0.25 7.19 16 9 C -0.27 -10.44 9.31 22.59 0.21 -10.23 16 10 C -0.08 -3.40 10.01 22.20 0.22 -3.17 16 11 C -0.20 -10.19 8.65 22.75 0.20 -9.99 16 12 C 0.10 5.66 5.55 -21.31 -0.12 5.54 16 13 C -0.50 -27.67 9.06 23.46 0.21 -27.46 16 14 H 0.07 3.80 7.87 -2.91 -0.02 3.78 16 15 C 0.04 1.80 5.26 85.25 0.45 2.25 16 16 N -0.83 -43.01 10.83 21.83 0.24 -42.78 16 17 Si 0.98 38.55 29.57 68.60 2.03 40.57 16 18 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 19 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 20 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 21 C -0.28 -14.05 9.63 22.86 0.22 -13.83 16 22 H 0.05 1.13 8.13 -2.39 -0.02 1.11 16 23 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.05 1.14 8.13 -2.38 -0.02 1.12 16 25 H 0.18 3.37 8.06 -2.91 -0.02 3.35 16 26 H 0.19 3.99 5.93 -2.91 -0.02 3.97 16 27 H 0.42 16.89 4.86 -137.12 -0.67 16.22 16 28 H 0.14 4.15 5.95 -2.91 -0.02 4.14 16 29 H 0.13 4.55 8.06 -2.91 -0.02 4.52 16 30 H 0.11 5.71 6.23 -2.91 -0.02 5.69 16 31 H 0.29 13.56 8.30 -92.71 -0.77 12.79 16 32 H 0.09 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -63.59 280.54 5.80 -57.79 By element: Atomic # 1 Polarization: 34.70 SS G_CDS: 0.48 Total: 35.18 kcal Atomic # 6 Polarization: -38.05 SS G_CDS: 4.42 Total: -33.64 kcal Atomic # 7 Polarization: -66.83 SS G_CDS: -0.76 Total: -67.59 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -0.37 Total: -32.31 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.57 kcal Total: -63.59 5.80 -57.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313434594.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.122 kcal (2) G-P(sol) polarization free energy of solvation -63.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds