Wall clock time and date at job start Mon Mar 30 2020 04:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46795 * 2 1 4 4 C 1.46504 * 119.99937 * 273.89730 * 3 2 1 5 5 H 1.08992 * 109.47023 * 184.38392 * 4 3 2 6 6 C 1.53004 * 109.46973 * 304.38258 * 4 3 2 7 7 C 1.52994 * 109.46888 * 64.37928 * 4 3 2 8 8 C 1.53002 * 117.50014 * 248.62170 * 7 4 3 9 9 C 1.52999 * 60.00102 * 252.51549 * 8 7 4 10 10 S 1.65600 * 120.00135 * 93.90211 * 3 2 1 11 11 O 1.42097 * 106.40354 * 23.53437 * 10 3 2 12 12 O 1.42093 * 106.40354 * 156.45830 * 10 3 2 13 13 C 1.76198 * 107.21544 * 269.99685 * 10 3 2 14 14 H 1.07998 * 120.00520 * 359.97438 * 13 10 3 15 15 C 1.37876 * 120.00287 * 180.02562 * 13 10 3 16 16 N 1.31520 * 119.99521 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 120.00417 * 179.97438 * 15 13 10 18 18 H 1.48497 * 109.47085 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47150 * 119.99774 * 17 15 13 20 20 H 1.48500 * 109.47090 * 239.99775 * 17 15 13 21 21 H 1.08995 * 109.47513 * 305.55678 * 1 2 3 22 22 H 1.09000 * 109.46795 * 65.55793 * 1 2 3 23 23 H 1.09007 * 109.46605 * 185.54926 * 1 2 3 24 24 H 1.08993 * 109.47582 * 239.99396 * 2 1 3 25 25 H 1.09000 * 109.46603 * 119.99314 * 2 1 3 26 26 H 1.09006 * 109.46984 * 299.73841 * 6 4 3 27 27 H 1.09002 * 109.47141 * 59.73652 * 6 4 3 28 28 H 1.08992 * 109.46873 * 179.74117 * 6 4 3 29 29 H 1.08999 * 115.56524 * 34.31613 * 7 4 3 30 30 H 1.09000 * 117.49556 * 0.02562 * 8 7 4 31 31 H 1.09003 * 117.49854 * 145.02174 * 8 7 4 32 32 H 1.09005 * 117.49597 * 252.51446 * 9 8 7 33 33 H 1.09001 * 117.52066 * 107.48271 * 9 8 7 34 34 H 0.97004 * 119.99370 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1811 2.1006 -1.2658 5 1 2.6239 3.0779 -1.0740 6 6 3.0964 1.2992 -2.1938 7 6 0.8143 2.2812 -1.9292 8 6 0.5464 1.5024 -3.2186 9 6 0.7719 3.0148 -3.2712 10 16 2.3863 2.1294 1.4308 11 8 2.6668 1.0951 2.3639 12 8 3.3081 3.1642 1.1170 13 6 0.9190 2.9247 1.9958 14 1 0.0105 2.8573 1.4158 15 6 0.9309 3.6341 3.1780 16 7 2.0374 3.7167 3.8842 17 14 -0.6244 4.4779 3.7768 18 1 -1.7234 4.2353 2.8080 19 1 -1.0044 3.9313 5.1042 20 1 -0.3816 5.9382 3.8938 21 1 -0.3634 0.5976 0.8360 22 1 -0.3633 0.4252 -0.9356 23 1 -0.3633 -1.0229 0.0994 24 1 1.8934 -0.5139 -0.8898 25 1 1.8933 -0.5137 0.8901 26 1 4.0717 1.1745 -1.7231 27 1 2.6558 0.3201 -2.3819 28 1 3.2138 1.8322 -3.1372 29 1 -0.0233 2.4299 -1.2477 30 1 1.3437 0.8610 -3.5940 31 1 -0.4675 1.1386 -3.3853 32 1 -0.0937 3.6460 -3.4726 33 1 1.7176 3.3690 -3.6813 34 1 2.0456 4.2155 4.7161 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000324821163.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:24 Heat of formation + Delta-G solvation = -70.418446 kcal Electronic energy + Delta-G solvation = -17446.303973 eV Core-core repulsion = 14699.462727 eV Total energy + Delta-G solvation = -2746.841247 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.103 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.53453 -35.34783 -34.89376 -33.91216 -33.03623 -30.86981 -28.10136 -26.10807 -24.52830 -22.20972 -21.82143 -19.35371 -18.36209 -17.40382 -16.33422 -16.04281 -15.04853 -14.61693 -14.48498 -13.92448 -13.44405 -13.00158 -12.79466 -12.51818 -12.15271 -11.95222 -11.60108 -11.42807 -11.21917 -11.21330 -11.11122 -10.75749 -10.60006 -10.51451 -10.30555 -10.22441 -10.09327 -9.79836 -9.50674 -9.22667 -8.85677 -8.16324 -6.66319 -5.27130 2.31802 3.06688 3.15010 3.22040 4.03013 4.10480 4.54577 4.67264 4.96173 5.17367 5.25347 5.45443 5.59444 5.61520 5.70672 5.77266 5.81295 5.96320 5.99733 6.01838 6.12068 6.19046 6.28031 6.29147 6.39397 6.49904 6.56187 6.63794 6.81639 6.99288 7.36771 7.71083 8.02796 8.93045 10.27250 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.025495 B = 0.009506 C = 0.008645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.004328 B = 2944.787655 C = 3237.948355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.120 3.880 3 N -1.004 6.004 4 C 0.178 3.822 5 H 0.104 0.896 6 C -0.161 4.161 7 C -0.153 4.153 8 C -0.186 4.186 9 C -0.182 4.182 10 S 2.713 3.287 11 O -1.005 7.005 12 O -1.006 7.006 13 C -1.016 5.016 14 H 0.102 0.898 15 C 0.133 3.867 16 N -0.847 5.847 17 Si 0.918 3.082 18 H -0.263 1.263 19 H -0.272 1.272 20 H -0.271 1.271 21 H 0.066 0.934 22 H 0.059 0.941 23 H 0.053 0.947 24 H 0.065 0.935 25 H 0.085 0.915 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.112 0.888 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.681 -4.066 -11.296 12.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.006 4.006 3 N -0.837 5.837 4 C 0.071 3.929 5 H 0.122 0.878 6 C -0.219 4.219 7 C -0.173 4.173 8 C -0.223 4.223 9 C -0.219 4.219 10 S 2.815 3.185 11 O -0.996 6.996 12 O -0.997 6.997 13 C -1.149 5.149 14 H 0.121 0.879 15 C -0.085 4.085 16 N -0.477 5.477 17 Si 0.742 3.258 18 H -0.186 1.186 19 H -0.197 1.197 20 H -0.197 1.197 21 H 0.085 0.915 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.083 0.917 25 H 0.103 0.897 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.130 0.870 30 H 0.116 0.884 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.686 -4.057 -10.730 11.781 hybrid contribution -1.585 0.642 0.286 1.733 sum -4.270 -3.415 -10.444 11.789 Atomic orbital electron populations 1.22382 0.97077 1.01326 1.02965 1.21046 0.93838 0.83145 1.02581 1.57996 1.82460 1.21786 1.21463 1.20170 0.92397 0.96442 0.83931 0.87783 1.22224 0.99905 1.00585 0.99218 1.22908 1.00213 1.03873 0.90261 1.23095 1.02252 0.94410 1.02575 1.22944 1.02901 0.94618 1.01480 1.00511 0.75580 0.72551 0.69879 1.93340 1.86384 1.59665 1.60166 1.93341 1.64711 1.57901 1.83713 1.30668 1.18613 1.48523 1.17098 0.87928 1.24750 0.97659 0.92174 0.93902 1.69913 1.27197 1.36148 1.14441 0.86173 0.81542 0.79088 0.78997 1.18646 1.19674 1.19662 0.91498 0.92202 0.92846 0.91655 0.89680 0.92232 0.92013 0.92109 0.86984 0.88390 0.89539 0.89167 0.88873 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.80 9.67 37.16 0.36 -2.44 16 2 C 0.12 2.07 6.11 -4.04 -0.02 2.05 16 3 N -1.00 -20.32 2.73 -107.30 -0.29 -20.61 16 4 C 0.18 3.10 3.06 -67.93 -0.21 2.89 16 5 H 0.10 2.03 6.85 -51.93 -0.36 1.67 16 6 C -0.16 -2.26 7.67 37.16 0.28 -1.98 16 7 C -0.15 -2.29 4.14 -90.62 -0.37 -2.67 16 8 C -0.19 -2.22 9.09 -26.73 -0.24 -2.46 16 9 C -0.18 -2.25 9.90 -26.73 -0.26 -2.52 16 10 S 2.71 72.56 4.98 -107.50 -0.54 72.02 16 11 O -1.01 -29.50 16.58 -57.17 -0.95 -30.44 16 12 O -1.01 -29.49 16.55 -57.17 -0.95 -30.44 16 13 C -1.02 -27.92 9.74 30.60 0.30 -27.62 16 14 H 0.10 2.59 7.67 -52.49 -0.40 2.19 16 15 C 0.13 3.72 5.46 -17.82 -0.10 3.62 16 16 N -0.85 -25.11 13.19 55.43 0.73 -24.37 16 17 Si 0.92 20.72 29.54 -169.99 -5.02 15.70 16 18 H -0.26 -5.71 7.11 56.52 0.40 -5.30 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 21 H 0.07 1.20 8.00 -51.93 -0.42 0.78 16 22 H 0.06 0.85 5.60 -51.93 -0.29 0.56 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.07 0.94 6.23 -51.93 -0.32 0.61 16 25 H 0.08 1.59 6.93 -51.93 -0.36 1.23 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.78 5.41 -51.93 -0.28 0.50 16 28 H 0.06 0.72 7.05 -51.93 -0.37 0.36 16 29 H 0.11 1.83 7.37 -51.93 -0.38 1.45 16 30 H 0.10 1.08 5.85 -51.93 -0.30 0.77 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.09 1.08 7.61 -51.93 -0.39 0.68 16 34 H 0.29 7.69 8.31 -40.82 -0.34 7.36 16 LS Contribution 285.17 15.07 4.30 4.30 Total: -1.00 -33.60 285.17 -7.69 -41.28 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -4.70 Total: 3.70 kcal Atomic # 6 Polarization: -30.86 SS G_CDS: -0.27 Total: -31.13 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 0.44 Total: -44.99 kcal Atomic # 8 Polarization: -58.99 SS G_CDS: -1.89 Total: -60.88 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 72.56 SS G_CDS: -0.54 Total: 72.02 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -33.60 -7.69 -41.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324821163.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.137 kcal (2) G-P(sol) polarization free energy of solvation -33.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds