Wall clock time and date at job start Mon Mar 30 2020 04:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46900 * 111.00000 * 275.00251 * 12 2 1 14 14 C 1.53000 * 109.47300 * 179.97438 * 13 12 2 15 15 C 1.52995 * 109.47398 * 179.97438 * 14 13 12 16 16 C 1.53045 * 113.15824 * 275.37736 * 15 14 13 17 17 S 1.81424 * 89.89226 * 211.85283 * 16 15 14 18 18 O 1.42096 * 112.74916 * 280.47413 * 17 16 15 19 19 O 1.42099 * 112.75207 * 136.72495 * 17 16 15 20 20 C 1.53038 * 113.15377 * 174.99771 * 15 14 13 21 21 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 23 23 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 1.00896 * 110.99858 * 151.05146 * 12 2 1 26 26 H 1.09002 * 109.47272 * 300.00084 * 13 12 2 27 27 H 1.09001 * 109.47006 * 60.00062 * 13 12 2 28 28 H 1.08993 * 109.47298 * 300.00353 * 14 13 12 29 29 H 1.09009 * 109.46890 * 59.99830 * 14 13 12 30 30 H 1.08998 * 112.49552 * 45.21814 * 15 14 13 31 31 H 1.09001 * 113.14269 * 327.11478 * 16 15 14 32 32 H 1.09001 * 113.14524 * 96.58657 * 16 15 14 33 33 H 1.08990 * 113.15486 * 263.41305 * 20 15 14 34 34 H 1.09003 * 113.14772 * 32.89373 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5329 3.5746 15 6 2.6609 0.4203 4.7694 16 6 3.9580 1.2308 4.8219 17 16 3.8772 1.2364 6.6343 18 8 2.9692 2.2050 7.1409 19 8 5.1364 0.9815 7.2414 20 6 3.0483 -0.2775 6.0752 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.7088 1.1611 -3.4845 25 1 2.9173 -1.1204 1.0288 26 1 2.7588 1.0463 2.1182 27 1 1.0870 0.6164 2.5525 28 1 1.9183 -1.3563 3.8031 29 1 3.5904 -0.9270 3.3692 30 1 1.7662 1.0359 4.8617 31 1 4.8190 0.6871 4.4330 32 1 3.8601 2.2248 4.3854 33 1 2.1886 -0.5468 6.6886 34 1 3.7340 -1.1120 5.9281 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379651791.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:29 Heat of formation + Delta-G solvation = -58.222871 kcal Electronic energy + Delta-G solvation = -15923.978010 eV Core-core repulsion = 13177.665603 eV Total energy + Delta-G solvation = -2746.312407 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.103 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.05574 -37.40473 -36.25050 -35.69444 -32.75934 -30.17035 -27.14652 -26.87129 -25.20794 -22.46173 -20.63942 -19.74021 -19.00848 -16.72626 -16.62591 -16.43473 -16.20441 -15.30726 -14.93219 -14.46933 -13.88136 -13.35401 -13.20799 -12.96961 -12.50264 -12.44458 -12.42499 -12.19310 -11.69080 -11.42158 -11.01252 -10.91365 -10.90481 -10.72579 -10.53096 -10.46000 -10.21181 -10.13087 -9.82098 -8.86021 -8.49976 -7.31184 -6.05387 -4.12198 -0.03980 1.79147 3.28790 3.33521 3.36009 3.47860 3.79316 4.01129 4.37521 4.56061 4.68315 4.94493 5.07900 5.21569 5.26454 5.42742 5.51242 5.63110 5.86066 5.88788 6.05652 6.41970 6.48192 6.85703 7.10937 7.20596 7.47525 7.74799 7.86788 8.24592 8.35264 8.64004 8.98182 9.53889 11.00912 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.053791 B = 0.003827 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.410073 B = 7315.630869 C = 7457.539075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.211 3.789 3 H 0.000 1.000 4 C -0.520 4.520 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.287 1.287 10 H -0.278 1.278 11 H -0.276 1.276 12 N -0.690 5.690 13 C 0.058 3.942 14 C -0.092 4.092 15 C -0.067 4.067 16 C -0.594 4.594 17 S 2.401 3.599 18 O -0.919 6.919 19 O -0.934 6.934 20 C -0.594 4.594 21 H 0.031 0.969 22 H 0.004 0.996 23 H 0.080 0.920 24 H 0.262 0.738 25 H 0.329 0.671 26 H 0.020 0.980 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.113 0.887 31 H 0.143 0.857 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.668 -0.165 16.016 16.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.103 3.897 3 H 0.018 0.982 4 C -0.559 4.559 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.213 1.213 10 H -0.203 1.203 11 H -0.202 1.202 12 N -0.321 5.321 13 C -0.072 4.072 14 C -0.132 4.132 15 C -0.088 4.088 16 C -0.723 4.723 17 S 2.584 3.416 18 O -0.916 6.916 19 O -0.931 6.931 20 C -0.723 4.723 21 H 0.050 0.950 22 H 0.023 0.977 23 H 0.099 0.901 24 H 0.072 0.928 25 H 0.146 0.854 26 H 0.038 0.962 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.131 0.869 31 H 0.161 0.839 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.281 0.360 17.041 17.574 hybrid contribution 0.696 -0.463 -2.119 2.278 sum 4.977 -0.103 14.922 15.730 Atomic orbital electron populations 1.21713 0.97896 0.99317 0.99333 1.19105 0.92637 0.92306 0.85633 0.98218 1.21228 1.31600 1.12551 0.90500 0.92290 1.24928 0.95018 0.94992 0.99070 1.69888 1.36514 1.22872 1.23604 0.86572 0.79050 0.79787 0.82039 1.21277 1.20337 1.20179 1.60729 1.31967 1.33239 1.06186 1.21923 0.99744 0.94297 0.91275 1.21417 1.02081 0.97354 0.92320 1.21494 0.96150 0.96444 0.94688 1.31051 1.05843 1.09043 1.26374 1.08625 0.75668 0.78849 0.78420 1.93708 1.64162 1.56170 1.77590 1.93625 1.39915 1.84438 1.75129 1.31003 1.14113 1.20229 1.06934 0.94985 0.97744 0.90121 0.92843 0.85372 0.96188 0.91779 0.90402 0.91632 0.86905 0.83884 0.85684 0.85853 0.83951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.08 9.19 37.16 0.34 -2.74 16 2 C 0.21 5.30 2.60 -68.87 -0.18 5.12 16 3 H 0.00 0.01 7.80 -51.92 -0.40 -0.40 16 4 C -0.52 -14.16 8.59 -34.44 -0.30 -14.45 16 5 H 0.06 1.57 7.62 -52.49 -0.40 1.17 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.31 11.32 55.43 0.63 -24.69 16 8 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 9 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.69 -14.26 6.30 -107.95 -0.68 -14.94 16 13 C 0.06 0.96 5.48 -3.82 -0.02 0.94 16 14 C -0.09 -1.13 5.25 -26.73 -0.14 -1.27 16 15 C -0.07 -0.63 3.32 -90.58 -0.30 -0.93 16 16 C -0.59 -4.74 7.49 37.18 0.28 -4.46 16 17 S 2.40 18.87 7.55 -107.50 -0.81 18.06 16 18 O -0.92 -10.34 18.18 -57.30 -1.04 -11.38 16 19 O -0.93 -10.40 18.18 -57.30 -1.04 -11.44 16 20 C -0.59 -4.12 7.49 37.18 0.28 -3.84 16 21 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 23 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.33 6.58 8.22 -39.29 -0.32 6.26 16 26 H 0.02 0.34 8.06 -51.93 -0.42 -0.08 16 27 H 0.06 1.10 7.44 -51.93 -0.39 0.71 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.75 7.89 -51.92 -0.41 0.34 16 30 H 0.11 1.02 8.13 -51.93 -0.42 0.60 16 31 H 0.14 1.02 7.94 -51.93 -0.41 0.61 16 32 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.14 0.85 8.12 -51.93 -0.42 0.43 16 LS Contribution 292.71 15.07 4.41 4.41 Total: -1.00 -33.85 292.71 -8.82 -42.67 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -5.13 Total: 1.30 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: -0.13 Total: -20.04 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: -0.05 Total: -39.63 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -2.08 Total: -22.82 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 18.87 SS G_CDS: -0.81 Total: 18.06 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.85 -8.82 -42.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379651791.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.555 kcal (2) G-P(sol) polarization free energy of solvation -33.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds