Wall clock time and date at job start Mon Mar 30 2020 04:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46900 * 111.00000 * 275.00251 * 12 2 1 14 14 C 1.53000 * 109.47300 * 179.97438 * 13 12 2 15 15 C 1.52995 * 109.47398 * 179.97438 * 14 13 12 16 16 C 1.53045 * 113.15824 * 275.37736 * 15 14 13 17 17 S 1.81424 * 89.89226 * 211.85283 * 16 15 14 18 18 O 1.42096 * 112.74916 * 280.47413 * 17 16 15 19 19 O 1.42099 * 112.75207 * 136.72495 * 17 16 15 20 20 C 1.53038 * 113.15377 * 174.99771 * 15 14 13 21 21 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 23 23 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 1.00896 * 110.99858 * 151.05146 * 12 2 1 26 26 H 1.09002 * 109.47272 * 300.00084 * 13 12 2 27 27 H 1.09001 * 109.47006 * 60.00062 * 13 12 2 28 28 H 1.08993 * 109.47298 * 300.00353 * 14 13 12 29 29 H 1.09009 * 109.46890 * 59.99830 * 14 13 12 30 30 H 1.08998 * 112.49552 * 45.21814 * 15 14 13 31 31 H 1.09001 * 113.14269 * 327.11478 * 16 15 14 32 32 H 1.09001 * 113.14524 * 96.58657 * 16 15 14 33 33 H 1.08990 * 113.15486 * 263.41305 * 20 15 14 34 34 H 1.09003 * 113.14772 * 32.89373 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5329 3.5746 15 6 2.6609 0.4203 4.7694 16 6 3.9580 1.2308 4.8219 17 16 3.8772 1.2364 6.6343 18 8 2.9692 2.2050 7.1409 19 8 5.1364 0.9815 7.2414 20 6 3.0483 -0.2775 6.0752 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.7088 1.1611 -3.4845 25 1 2.9173 -1.1204 1.0288 26 1 2.7588 1.0463 2.1182 27 1 1.0870 0.6164 2.5525 28 1 1.9183 -1.3563 3.8031 29 1 3.5904 -0.9270 3.3692 30 1 1.7662 1.0359 4.8617 31 1 4.8190 0.6871 4.4330 32 1 3.8601 2.2248 4.3854 33 1 2.1886 -0.5468 6.6886 34 1 3.7340 -1.1120 5.9281 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379651791.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:29 Heat of formation + Delta-G solvation = -84.455224 kcal Electronic energy + Delta-G solvation = -15925.115531 eV Core-core repulsion = 13177.665603 eV Total energy + Delta-G solvation = -2747.449927 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.103 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.96222 -38.23438 -37.34272 -36.97471 -34.59440 -31.76862 -28.70477 -27.48396 -27.26286 -23.78514 -21.76036 -21.37222 -19.68959 -18.52467 -17.41730 -17.24829 -17.01122 -16.81551 -16.23381 -15.89548 -15.40892 -14.76797 -14.31360 -13.97405 -13.72167 -13.62531 -13.27975 -13.22854 -13.16302 -12.87760 -12.67315 -12.45878 -12.36419 -12.18499 -12.02333 -11.87337 -11.53830 -11.19245 -11.14933 -10.86746 -10.56635 -9.03602 -8.13449 -6.28012 -0.70990 1.16780 1.43033 1.44936 1.52494 2.41621 2.83550 3.12641 3.15452 3.29407 3.71404 3.83630 4.02754 4.38014 4.39223 4.51131 4.62087 4.70672 4.78683 4.86135 4.96593 5.06903 5.07745 5.23024 5.30624 5.35611 5.50482 5.67647 5.86747 6.22580 6.48426 6.79447 7.02567 7.42797 8.92035 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.053791 B = 0.003827 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.410073 B = 7315.630869 C = 7457.539075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.213 3.787 3 H -0.032 1.032 4 C -0.540 4.540 5 H 0.061 0.939 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.963 3.037 9 H -0.285 1.285 10 H -0.270 1.270 11 H -0.271 1.271 12 N -0.689 5.689 13 C 0.055 3.945 14 C -0.083 4.083 15 C -0.078 4.078 16 C -0.595 4.595 17 S 2.434 3.566 18 O -0.954 6.954 19 O -0.965 6.965 20 C -0.574 4.574 21 H 0.027 0.973 22 H 0.022 0.978 23 H 0.055 0.945 24 H 0.262 0.738 25 H 0.333 0.667 26 H 0.015 0.985 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.115 0.885 31 H 0.155 0.845 32 H 0.128 0.872 33 H 0.142 0.858 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.303 -1.391 16.529 17.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.104 3.896 3 H -0.015 1.015 4 C -0.578 4.578 5 H 0.079 0.921 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.789 3.211 9 H -0.210 1.210 10 H -0.195 1.195 11 H -0.196 1.196 12 N -0.320 5.320 13 C -0.074 4.074 14 C -0.122 4.122 15 C -0.099 4.099 16 C -0.724 4.724 17 S 2.620 3.380 18 O -0.951 6.951 19 O -0.962 6.962 20 C -0.704 4.704 21 H 0.047 0.953 22 H 0.041 0.959 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.151 0.849 26 H 0.033 0.967 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.133 0.867 31 H 0.173 0.827 32 H 0.146 0.854 33 H 0.161 0.839 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.933 -0.856 17.589 18.288 hybrid contribution 0.479 -0.075 -2.272 2.323 sum 5.412 -0.931 15.317 16.272 Atomic orbital electron populations 1.21543 0.97854 0.98822 0.98980 1.18925 0.92720 0.90759 0.87195 1.01473 1.21589 1.31785 1.12772 0.91638 0.92103 1.25758 0.95149 0.95665 1.02132 1.70024 1.37438 1.24124 1.24236 0.85532 0.78756 0.78643 0.78207 1.21039 1.19483 1.19609 1.60639 1.32251 1.33574 1.05492 1.22033 0.99607 0.94187 0.91614 1.21303 1.02418 0.97363 0.91117 1.21523 0.97033 0.96631 0.94690 1.31115 1.05662 1.09354 1.26297 1.07555 0.74356 0.78495 0.77592 1.93658 1.64887 1.58087 1.78457 1.93580 1.41654 1.84986 1.76000 1.30885 1.14863 1.19617 1.05074 0.95336 0.95940 0.92610 0.92850 0.84937 0.96721 0.92491 0.90199 0.90496 0.86667 0.82674 0.85380 0.83920 0.82177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.67 9.19 71.98 0.66 -5.01 16 2 C 0.21 10.78 2.60 44.17 0.11 10.89 16 3 H -0.03 -1.81 7.80 -2.38 -0.02 -1.83 16 4 C -0.54 -29.37 8.59 25.60 0.22 -29.15 16 5 H 0.06 3.21 7.62 -2.91 -0.02 3.19 16 6 C 0.01 0.67 5.30 84.66 0.45 1.12 16 7 N -0.92 -52.84 11.32 21.45 0.24 -52.60 16 8 Si 0.96 42.93 29.54 68.60 2.03 44.95 16 9 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 10 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 12 N -0.69 -27.99 6.30 -495.44 -3.12 -31.12 16 13 C 0.06 1.79 5.48 86.30 0.47 2.26 16 14 C -0.08 -1.83 5.25 30.59 0.16 -1.67 16 15 C -0.08 -1.27 3.32 -10.77 -0.04 -1.30 16 16 C -0.59 -8.30 7.49 72.00 0.54 -7.76 16 17 S 2.43 34.33 7.55 -56.49 -0.43 33.90 16 18 O -0.95 -20.53 18.18 -127.88 -2.32 -22.85 16 19 O -0.97 -20.18 18.18 -127.88 -2.32 -22.50 16 20 C -0.57 -6.15 7.49 71.99 0.54 -5.61 16 21 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 22 H 0.02 0.99 7.45 -2.39 -0.02 0.97 16 23 H 0.06 3.06 6.07 -2.39 -0.01 3.04 16 24 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 25 H 0.33 13.00 8.22 -89.70 -0.74 12.27 16 26 H 0.01 0.49 8.06 -2.39 -0.02 0.47 16 27 H 0.06 1.91 7.44 -2.39 -0.02 1.89 16 28 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.08 1.54 7.89 -2.38 -0.02 1.53 16 30 H 0.12 1.85 8.13 -2.39 -0.02 1.83 16 31 H 0.16 1.82 7.94 -2.39 -0.02 1.81 16 32 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.16 1.26 8.12 -2.39 -0.02 1.24 16 Total: -1.00 -71.87 292.71 -2.46 -74.33 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.35 Total: 12.13 kcal Atomic # 6 Polarization: -39.37 SS G_CDS: 3.12 Total: -36.24 kcal Atomic # 7 Polarization: -80.84 SS G_CDS: -2.88 Total: -83.72 kcal Atomic # 8 Polarization: -40.70 SS G_CDS: -4.65 Total: -45.35 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: 34.33 SS G_CDS: -0.43 Total: 33.90 kcal Total: -71.87 -2.46 -74.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379651791.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.123 kcal (2) G-P(sol) polarization free energy of solvation -71.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds