Wall clock time and date at job start Mon Mar 30 2020 03:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46824 * 2 1 4 4 C 1.53000 * 109.46846 * 119.99583 * 2 1 3 5 5 C 1.52997 * 109.47060 * 185.00166 * 4 2 1 6 6 C 1.52992 * 109.47482 * 180.02562 * 5 4 2 7 7 C 1.52995 * 117.50322 * 243.62346 * 6 5 4 8 8 C 1.52999 * 60.00223 * 252.50829 * 7 6 5 9 9 N 1.46498 * 109.47107 * 239.99825 * 2 1 3 10 10 S 1.65596 * 119.99849 * 95.00025 * 9 2 1 11 11 O 1.42104 * 106.40194 * 178.53496 * 10 9 2 12 12 O 1.42094 * 106.40693 * 311.46011 * 10 9 2 13 13 C 1.76208 * 107.21974 * 65.00042 * 10 9 2 14 14 H 1.08003 * 119.99708 * 359.97438 * 13 10 9 15 15 C 1.37871 * 120.00145 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99941 * 359.97438 * 15 13 10 17 17 Si 1.86803 * 120.00001 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.46903 * 59.99905 * 17 15 13 19 19 H 1.48503 * 109.47083 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47068 * 300.00087 * 17 15 13 21 21 H 1.09001 * 109.47241 * 299.99897 * 1 2 3 22 22 H 1.08996 * 109.46751 * 60.00260 * 1 2 3 23 23 H 1.09002 * 109.46824 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47398 * 305.00335 * 4 2 1 25 25 H 1.09001 * 109.47194 * 65.00515 * 4 2 1 26 26 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 27 27 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 28 28 H 1.09005 * 115.54879 * 29.32806 * 6 5 4 29 29 H 1.09004 * 117.49787 * 359.97438 * 7 6 5 30 30 H 1.09002 * 117.50423 * 145.01738 * 7 6 5 31 31 H 1.09000 * 117.49408 * 252.50795 * 8 7 6 32 32 H 1.09001 * 117.50131 * 107.48609 * 8 7 6 33 33 H 0.96998 * 119.99658 * 274.99422 * 9 2 1 34 34 H 0.97005 * 119.99880 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0749 -1.3349 2.5627 7 6 4.7767 -0.4915 3.6289 8 6 5.5899 -1.4417 2.7477 9 7 2.0184 -0.6906 -1.1961 10 16 2.4122 0.1771 -2.5504 11 8 2.8778 -0.7635 -3.5084 12 8 1.3248 1.0592 -2.7922 13 6 3.7929 1.1910 -2.1371 14 1 4.2099 1.1556 -1.1415 15 6 4.3400 2.0302 -3.0844 16 7 3.8318 2.0736 -4.2966 17 14 5.8032 3.1055 -2.6460 18 1 6.9404 2.2472 -2.2272 19 1 6.1998 3.9087 -3.8304 20 1 5.4330 4.0149 -1.5320 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.6053 -0.2616 2.1370 25 1 1.7517 -1.7715 1.2057 26 1 3.9995 -1.0727 0.4261 27 1 3.8532 0.4370 1.3574 28 1 3.4659 -2.1723 2.9034 29 1 4.8755 0.5776 3.4404 30 1 4.6295 -0.7737 4.6714 31 1 5.9776 -2.3493 3.2105 32 1 6.2232 -0.9979 1.9796 33 1 2.1111 -1.6562 -1.1947 34 1 4.2166 2.6643 -4.9629 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398050808.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:11 Heat of formation + Delta-G solvation = -93.086085 kcal Electronic energy + Delta-G solvation = -16716.655990 eV Core-core repulsion = 13968.831800 eV Total energy + Delta-G solvation = -2747.824189 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.103 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -37.90499 -36.13113 -35.06485 -33.88177 -33.06185 -30.83850 -28.87980 -26.09939 -24.00975 -22.31717 -20.61742 -20.22611 -18.99497 -17.42559 -16.16302 -15.69666 -15.27949 -14.97743 -14.18007 -13.98281 -13.87478 -13.28825 -13.00046 -12.69034 -12.02689 -11.91725 -11.53487 -11.37116 -11.23761 -11.19355 -11.11631 -11.00927 -10.63559 -10.54950 -10.23715 -10.16163 -10.12061 -9.89398 -9.72161 -9.21332 -8.94905 -8.45101 -6.67042 -5.28412 2.41983 3.09266 3.14010 3.19457 3.87134 4.08338 4.65828 4.67584 4.83036 4.99939 5.02546 5.27331 5.33626 5.51376 5.65652 5.69213 5.81489 5.87177 5.92819 5.98568 6.06497 6.14064 6.16415 6.25082 6.33103 6.42108 6.61453 6.66308 6.76166 7.00047 7.35811 7.97216 8.04563 8.92092 10.27165 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.017905 B = 0.009284 C = 0.006868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.409652 B = 3015.161348 C = 4075.851717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.155 3.845 3 H 0.087 0.913 4 C -0.117 4.117 5 C -0.096 4.096 6 C -0.147 4.147 7 C -0.185 4.185 8 C -0.186 4.186 9 N -1.131 6.131 10 S 2.715 3.285 11 O -1.011 7.011 12 O -1.007 7.007 13 C -1.020 5.020 14 H 0.102 0.898 15 C 0.134 3.866 16 N -0.846 5.846 17 Si 0.917 3.083 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.264 1.264 21 H 0.056 0.944 22 H 0.071 0.929 23 H 0.052 0.948 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.400 0.600 34 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.139 -4.245 13.259 13.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.047 3.953 3 H 0.105 0.895 4 C -0.156 4.156 5 C -0.133 4.133 6 C -0.165 4.165 7 C -0.222 4.222 8 C -0.223 4.223 9 N -0.885 5.885 10 S 2.815 3.185 11 O -1.001 7.001 12 O -0.997 6.997 13 C -1.153 5.153 14 H 0.120 0.880 15 C -0.084 4.084 16 N -0.476 5.476 17 Si 0.741 3.259 18 H -0.189 1.189 19 H -0.202 1.202 20 H -0.189 1.189 21 H 0.075 0.925 22 H 0.091 0.909 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.119 0.881 29 H 0.112 0.888 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.231 0.769 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.646 -4.032 12.236 12.899 hybrid contribution 1.327 0.354 0.668 1.527 sum 0.681 -3.678 12.904 13.435 Atomic orbital electron populations 1.22330 0.96224 1.01734 1.02616 1.20576 0.93387 0.96590 0.84726 0.89491 1.21855 0.95484 1.00808 0.97468 1.21265 0.95521 1.00442 0.96077 1.22392 0.94457 1.01568 0.98119 1.23028 1.05390 0.97769 0.96018 1.22969 0.94490 1.01478 1.03324 1.56060 1.83565 1.18368 1.30510 1.00379 0.74953 0.72931 0.70274 1.93368 1.83027 1.64821 1.58887 1.93353 1.56678 1.66118 1.83579 1.30558 1.36877 1.40737 1.07144 0.87994 1.24723 0.96515 0.94124 0.93050 1.69895 1.39272 1.34985 1.03423 0.86251 0.81023 0.79714 0.78875 1.18900 1.20174 1.18880 0.92495 0.90949 0.92934 0.91323 0.91803 0.90454 0.91419 0.88145 0.88808 0.89373 0.89250 0.88625 0.76939 0.89905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 9.52 37.16 0.35 -2.24 16 2 C 0.16 2.58 2.77 -67.93 -0.19 2.39 16 3 H 0.09 1.56 7.85 -51.93 -0.41 1.16 16 4 C -0.12 -1.53 4.77 -26.73 -0.13 -1.66 16 5 C -0.10 -1.33 5.38 -26.74 -0.14 -1.48 16 6 C -0.15 -1.74 5.74 -90.63 -0.52 -2.26 16 7 C -0.19 -2.02 10.18 -26.73 -0.27 -2.29 16 8 C -0.19 -2.13 10.25 -26.73 -0.27 -2.40 16 9 N -1.13 -21.91 4.92 -4.89 -0.02 -21.94 16 10 S 2.72 71.40 4.93 -107.50 -0.53 70.87 16 11 O -1.01 -29.75 18.02 -57.17 -1.03 -30.78 16 12 O -1.01 -29.18 17.28 -57.17 -0.99 -30.17 16 13 C -1.02 -27.63 9.58 30.60 0.29 -27.34 16 14 H 0.10 2.49 7.81 -52.48 -0.41 2.08 16 15 C 0.13 3.72 5.46 -17.82 -0.10 3.62 16 16 N -0.85 -24.98 13.19 55.43 0.73 -24.25 16 17 Si 0.92 20.53 29.54 -169.99 -5.02 15.51 16 18 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 21 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.07 1.30 7.64 -51.93 -0.40 0.90 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.08 1.20 7.75 -51.93 -0.40 0.79 16 27 H 0.07 0.99 7.88 -51.93 -0.41 0.58 16 28 H 0.10 1.08 8.08 -51.93 -0.42 0.66 16 29 H 0.09 1.04 8.03 -51.93 -0.42 0.63 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.40 6.75 8.84 -34.47 -0.30 6.44 16 34 H 0.29 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 302.03 15.07 4.55 4.55 Total: -1.00 -33.92 302.03 -8.55 -42.46 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -5.26 Total: 7.38 kcal Atomic # 6 Polarization: -32.67 SS G_CDS: -0.98 Total: -33.65 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.71 Total: -46.18 kcal Atomic # 8 Polarization: -58.93 SS G_CDS: -2.02 Total: -60.95 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 71.40 SS G_CDS: -0.53 Total: 70.87 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.92 -8.55 -42.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398050808.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.622 kcal (2) G-P(sol) polarization free energy of solvation -33.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds