Wall clock time and date at job start Mon Mar 30 2020 03:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.46846 * 2 1 4 4 N 1.46906 * 109.46820 * 240.00877 * 2 1 3 5 5 C 1.46894 * 111.00261 * 84.99874 * 4 2 1 6 6 C 1.50698 * 109.46961 * 180.02562 * 5 4 2 7 7 H 1.08004 * 120.00143 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00133 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99673 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00050 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47555 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47217 * 119.99807 * 10 8 6 13 13 H 1.48509 * 109.46917 * 239.99575 * 10 8 6 14 14 C 1.52989 * 109.47516 * 120.00495 * 2 1 3 15 15 S 1.81400 * 115.56503 * 159.30981 * 14 2 1 16 16 C 1.81398 * 101.92230 * 180.10686 * 15 14 2 17 17 O 1.42101 * 108.57746 * 294.59144 * 15 14 2 18 18 O 1.42102 * 108.57861 * 65.61536 * 15 14 2 19 19 C 1.53000 * 117.50008 * 13.61988 * 14 2 1 20 20 C 1.52997 * 60.00347 * 252.51154 * 19 14 2 21 21 H 1.08996 * 109.47166 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46571 * 299.99742 * 1 2 3 23 23 H 1.09001 * 109.47384 * 59.99248 * 1 2 3 24 24 H 1.00906 * 110.99342 * 321.04007 * 4 2 1 25 25 H 1.09002 * 109.46942 * 299.99810 * 5 4 2 26 26 H 1.08992 * 109.47398 * 60.00142 * 5 4 2 27 27 H 0.97002 * 119.99737 * 179.97438 * 9 8 6 28 28 H 1.08997 * 109.47104 * 60.00138 * 16 15 14 29 29 H 1.09003 * 109.46920 * 179.97438 * 16 15 14 30 30 H 1.09000 * 109.47185 * 299.99375 * 16 15 14 31 31 H 1.09002 * 117.49696 * 0.02562 * 19 14 2 32 32 H 1.09002 * 117.50343 * 145.02258 * 19 14 2 33 33 H 1.08999 * 117.49685 * 252.51237 * 20 19 14 34 34 H 1.08997 * 117.50044 * 107.48590 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6923 -1.1996 5 6 2.0824 0.2228 -2.3469 6 6 2.5872 -0.5215 -3.5561 7 1 2.8369 -1.5695 -3.4798 8 6 2.7313 0.1356 -4.7597 9 7 2.4278 1.4119 -4.8524 10 14 3.3577 -0.7868 -6.2583 11 1 3.6264 -2.2008 -5.8928 12 1 2.3338 -0.7388 -7.3328 13 1 4.6116 -0.1539 -6.7408 14 6 2.0401 -0.7213 1.2491 15 16 3.7444 -1.3358 1.1571 16 6 3.9536 -2.1056 2.7862 17 8 3.8065 -2.3514 0.1651 18 8 4.6228 -0.2225 1.0661 19 6 1.0322 -1.5510 2.0468 20 6 1.5417 -0.2214 2.6066 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3632 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.4495 -1.4978 -1.4102 25 1 1.0870 0.6165 -2.5525 26 1 2.7588 1.0463 -2.1183 27 1 2.5296 1.8743 -5.6990 28 1 3.2184 -2.9007 2.9095 29 1 4.9572 -2.5239 2.8642 30 1 3.8111 -1.3551 3.5637 31 1 0.0057 -1.5833 1.6815 32 1 1.3930 -2.4661 2.5164 33 1 2.2379 -0.2618 3.4443 34 1 0.8505 0.6213 2.6097 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578524044.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:54 Heat of formation + Delta-G solvation = -37.931707 kcal Electronic energy + Delta-G solvation = -16907.944947 eV Core-core repulsion = 14162.512431 eV Total energy + Delta-G solvation = -2745.432516 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.103 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.68847 -36.45238 -35.52229 -34.93616 -32.45490 -29.70365 -28.87544 -26.24756 -24.38160 -22.84578 -21.52423 -20.16174 -18.06452 -17.22808 -16.30485 -15.86027 -15.33967 -14.98579 -14.75652 -14.02503 -13.89693 -13.32800 -13.24661 -13.12574 -12.35503 -12.24601 -11.97603 -11.69106 -11.49981 -11.46707 -11.31214 -11.17651 -11.04938 -10.70056 -10.67053 -10.46855 -10.16269 -9.96354 -9.79303 -9.11731 -8.42717 -7.38497 -5.96356 -3.96900 0.34612 3.18031 3.19647 3.37756 3.44800 3.52173 4.06844 4.36835 4.39134 4.52802 4.56697 4.72945 4.83793 5.16940 5.27692 5.37544 5.40062 5.44295 5.48327 5.56925 5.70816 5.72865 5.85641 6.12112 6.25229 6.42884 7.23426 7.44574 7.85051 8.15549 8.39713 8.62246 9.13041 9.67497 11.15050 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.030523 B = 0.006950 C = 0.006185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.118090 B = 4027.565951 C = 4525.930692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.133 3.867 3 H 0.088 0.912 4 N -0.690 5.690 5 C 0.194 3.806 6 C -0.511 4.511 7 H 0.067 0.933 8 C 0.054 3.946 9 N -0.900 5.900 10 Si 0.899 3.101 11 H -0.271 1.271 12 H -0.286 1.286 13 H -0.284 1.284 14 C -0.601 4.601 15 S 2.477 3.523 16 C -0.683 4.683 17 O -0.904 6.904 18 O -0.936 6.936 19 C -0.138 4.138 20 C -0.136 4.136 21 H 0.059 0.941 22 H 0.053 0.947 23 H 0.065 0.935 24 H 0.341 0.659 25 H -0.008 1.008 26 H 0.031 0.969 27 H 0.260 0.740 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.116 0.884 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.403 -5.332 17.910 18.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.020 3.980 3 H 0.106 0.894 4 N -0.321 5.321 5 C 0.068 3.932 6 C -0.549 4.549 7 H 0.085 0.915 8 C -0.147 4.147 9 N -0.540 5.540 10 Si 0.727 3.273 11 H -0.195 1.195 12 H -0.212 1.212 13 H -0.210 1.210 14 C -0.690 4.690 15 S 2.653 3.347 16 C -0.829 4.829 17 O -0.901 6.901 18 O -0.933 6.933 19 C -0.176 4.176 20 C -0.175 4.175 21 H 0.078 0.922 22 H 0.072 0.928 23 H 0.084 0.916 24 H 0.159 0.841 25 H 0.009 0.991 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.143 0.857 29 H 0.144 0.856 30 H 0.141 0.859 31 H 0.134 0.866 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.112 -5.052 17.245 18.093 hybrid contribution -1.195 -0.262 -0.408 1.289 sum -3.307 -5.315 16.837 17.963 Atomic orbital electron populations 1.22556 0.97075 1.01864 1.02065 1.20645 0.92659 0.97040 0.87608 0.89407 1.60709 1.55470 1.10843 1.05115 1.19622 0.95572 0.91684 0.86314 1.21269 1.43088 0.97263 0.93320 0.91482 1.24984 0.95688 0.94936 0.99059 1.69976 1.49234 1.08991 1.25798 0.86421 0.78378 0.80189 0.82343 1.19505 1.21202 1.20995 1.32118 1.21132 1.15066 1.00651 1.06572 0.76020 0.76058 0.76005 1.30672 1.11416 1.14195 1.26644 1.93582 1.85006 1.58485 1.52978 1.93546 1.61309 1.52916 1.85524 1.23087 0.99817 0.94573 1.00105 1.22928 1.03413 0.99199 0.91918 0.92212 0.92832 0.91649 0.84130 0.99059 0.95138 0.93047 0.85685 0.85586 0.85882 0.86575 0.87958 0.87826 0.87114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.53 7.82 37.16 0.29 -2.24 16 2 C 0.13 2.29 2.86 -67.71 -0.19 2.10 16 3 H 0.09 1.63 7.80 -51.93 -0.40 1.23 16 4 N -0.69 -15.18 4.72 -108.00 -0.51 -15.69 16 5 C 0.19 5.22 5.24 -4.98 -0.03 5.19 16 6 C -0.51 -15.11 9.32 -34.44 -0.32 -15.43 16 7 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 8 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -27.61 13.29 55.43 0.74 -26.87 16 10 Si 0.90 22.61 29.54 -169.99 -5.02 17.59 16 11 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 14 C -0.60 -8.12 2.65 -90.62 -0.24 -8.36 16 15 S 2.48 38.44 5.08 -107.50 -0.55 37.89 16 16 C -0.68 -6.24 9.47 101.05 0.96 -5.28 16 17 O -0.90 -17.78 17.15 -57.83 -0.99 -18.78 16 18 O -0.94 -18.39 18.10 -57.83 -1.05 -19.44 16 19 C -0.14 -1.30 9.02 -26.73 -0.24 -1.54 16 20 C -0.14 -1.25 9.25 -26.73 -0.25 -1.50 16 21 H 0.06 0.78 6.73 -51.93 -0.35 0.43 16 22 H 0.05 0.62 6.96 -51.93 -0.36 0.26 16 23 H 0.06 1.06 7.45 -51.93 -0.39 0.68 16 24 H 0.34 7.17 8.46 -39.29 -0.33 6.84 16 25 H -0.01 -0.23 7.44 -51.93 -0.39 -0.62 16 26 H 0.03 0.89 8.05 -51.93 -0.42 0.47 16 27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.12 0.85 6.63 -51.93 -0.34 0.51 16 29 H 0.13 1.05 8.14 -51.92 -0.42 0.63 16 30 H 0.12 0.83 6.63 -51.92 -0.34 0.49 16 31 H 0.12 1.04 5.89 -51.93 -0.31 0.74 16 32 H 0.10 0.70 6.37 -51.93 -0.33 0.37 16 33 H 0.10 0.68 6.38 -51.93 -0.33 0.35 16 34 H 0.11 0.95 7.29 -51.93 -0.38 0.57 16 LS Contribution 286.62 15.07 4.32 4.32 Total: -1.00 -36.63 286.62 -7.82 -44.45 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -4.64 Total: 2.07 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: -0.12 Total: -25.55 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 0.23 Total: -42.56 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -2.04 Total: -38.22 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Atomic # 16 Polarization: 38.44 SS G_CDS: -0.55 Total: 37.89 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -36.63 -7.82 -44.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578524044.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.522 kcal (2) G-P(sol) polarization free energy of solvation -36.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds