Wall clock time and date at job start Mon Mar 30 2020 03:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.46846 * 2 1 4 4 N 1.46906 * 109.46820 * 240.00877 * 2 1 3 5 5 C 1.46894 * 111.00261 * 84.99874 * 4 2 1 6 6 C 1.50698 * 109.46961 * 180.02562 * 5 4 2 7 7 H 1.08004 * 120.00143 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00133 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99673 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00050 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47555 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47217 * 119.99807 * 10 8 6 13 13 H 1.48509 * 109.46917 * 239.99575 * 10 8 6 14 14 C 1.52989 * 109.47516 * 120.00495 * 2 1 3 15 15 S 1.81400 * 115.56503 * 159.30981 * 14 2 1 16 16 C 1.81398 * 101.92230 * 180.10686 * 15 14 2 17 17 O 1.42101 * 108.57746 * 294.59144 * 15 14 2 18 18 O 1.42102 * 108.57861 * 65.61536 * 15 14 2 19 19 C 1.53000 * 117.50008 * 13.61988 * 14 2 1 20 20 C 1.52997 * 60.00347 * 252.51154 * 19 14 2 21 21 H 1.08996 * 109.47166 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46571 * 299.99742 * 1 2 3 23 23 H 1.09001 * 109.47384 * 59.99248 * 1 2 3 24 24 H 1.00906 * 110.99342 * 321.04007 * 4 2 1 25 25 H 1.09002 * 109.46942 * 299.99810 * 5 4 2 26 26 H 1.08992 * 109.47398 * 60.00142 * 5 4 2 27 27 H 0.97002 * 119.99737 * 179.97438 * 9 8 6 28 28 H 1.08997 * 109.47104 * 60.00138 * 16 15 14 29 29 H 1.09003 * 109.46920 * 179.97438 * 16 15 14 30 30 H 1.09000 * 109.47185 * 299.99375 * 16 15 14 31 31 H 1.09002 * 117.49696 * 0.02562 * 19 14 2 32 32 H 1.09002 * 117.50343 * 145.02258 * 19 14 2 33 33 H 1.08999 * 117.49685 * 252.51237 * 20 19 14 34 34 H 1.08997 * 117.50044 * 107.48590 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6923 -1.1996 5 6 2.0824 0.2228 -2.3469 6 6 2.5872 -0.5215 -3.5561 7 1 2.8369 -1.5695 -3.4798 8 6 2.7313 0.1356 -4.7597 9 7 2.4278 1.4119 -4.8524 10 14 3.3577 -0.7868 -6.2583 11 1 3.6264 -2.2008 -5.8928 12 1 2.3338 -0.7388 -7.3328 13 1 4.6116 -0.1539 -6.7408 14 6 2.0401 -0.7213 1.2491 15 16 3.7444 -1.3358 1.1571 16 6 3.9536 -2.1056 2.7862 17 8 3.8065 -2.3514 0.1651 18 8 4.6228 -0.2225 1.0661 19 6 1.0322 -1.5510 2.0468 20 6 1.5417 -0.2214 2.6066 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3632 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.4495 -1.4978 -1.4102 25 1 1.0870 0.6165 -2.5525 26 1 2.7588 1.0463 -2.1183 27 1 2.5296 1.8743 -5.6990 28 1 3.2184 -2.9007 2.9095 29 1 4.9572 -2.5239 2.8642 30 1 3.8111 -1.3551 3.5637 31 1 0.0057 -1.5833 1.6815 32 1 1.3930 -2.4661 2.5164 33 1 2.2379 -0.2618 3.4443 34 1 0.8505 0.6213 2.6097 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578524044.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:53 Heat of formation + Delta-G solvation = -68.535779 kcal Electronic energy + Delta-G solvation = -16909.272039 eV Core-core repulsion = 14162.512431 eV Total energy + Delta-G solvation = -2746.759608 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.103 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.77899 -37.74097 -36.87125 -36.47844 -34.55846 -31.12014 -29.93003 -28.08528 -25.79542 -23.81779 -23.29355 -21.43884 -19.31710 -18.74829 -17.82228 -17.19834 -16.77863 -16.49005 -15.97285 -15.75846 -15.49996 -14.59446 -14.17718 -14.02627 -13.90627 -13.66607 -13.54495 -13.02671 -12.97399 -12.79093 -12.75569 -12.73680 -12.54105 -12.17913 -12.03030 -11.92736 -11.61692 -11.28014 -11.23200 -10.94836 -10.68981 -9.18095 -8.25731 -6.36245 -0.72690 1.36334 1.38798 1.53312 2.14690 2.34786 2.40026 3.02589 3.06984 3.35929 3.46547 3.67905 3.87031 3.96857 4.11058 4.21348 4.31562 4.39198 4.53908 4.71393 4.79054 4.86334 4.93146 5.03496 5.06847 5.18981 5.22322 5.31443 5.59602 5.98474 6.40259 6.68552 6.86018 7.34038 8.86243 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.030523 B = 0.006950 C = 0.006185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.118090 B = 4027.565951 C = 4525.930692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.125 3.875 3 H 0.057 0.943 4 N -0.696 5.696 5 C 0.212 3.788 6 C -0.538 4.538 7 H 0.060 0.940 8 C 0.000 4.000 9 N -0.933 5.933 10 Si 0.973 3.027 11 H -0.266 1.266 12 H -0.270 1.270 13 H -0.277 1.277 14 C -0.631 4.631 15 S 2.442 3.558 16 C -0.643 4.643 17 O -0.970 6.970 18 O -1.004 7.004 19 C -0.118 4.118 20 C -0.115 4.115 21 H 0.078 0.922 22 H 0.089 0.911 23 H 0.035 0.965 24 H 0.344 0.656 25 H -0.025 1.025 26 H -0.009 1.009 27 H 0.266 0.734 28 H 0.162 0.838 29 H 0.140 0.860 30 H 0.160 0.840 31 H 0.124 0.876 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.488 -7.134 20.693 22.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 H 0.075 0.925 4 N -0.328 5.328 5 C 0.084 3.916 6 C -0.576 4.576 7 H 0.078 0.922 8 C -0.198 4.198 9 N -0.574 5.574 10 Si 0.796 3.204 11 H -0.190 1.190 12 H -0.195 1.195 13 H -0.203 1.203 14 C -0.723 4.723 15 S 2.629 3.371 16 C -0.796 4.796 17 O -0.966 6.966 18 O -1.001 7.001 19 C -0.155 4.155 20 C -0.153 4.153 21 H 0.097 0.903 22 H 0.108 0.892 23 H 0.054 0.946 24 H 0.162 0.838 25 H -0.008 1.008 26 H 0.009 0.991 27 H 0.075 0.925 28 H 0.180 0.820 29 H 0.158 0.842 30 H 0.178 0.822 31 H 0.142 0.858 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.191 -6.836 19.989 21.365 hybrid contribution -0.910 0.315 -1.091 1.455 sum -4.101 -6.521 18.898 20.408 Atomic orbital electron populations 1.22457 0.94526 1.03173 1.02379 1.20673 0.94779 0.95735 0.87430 0.92517 1.60546 1.56953 1.10354 1.04916 1.19177 0.93333 0.91234 0.87826 1.21604 1.43923 0.97230 0.94857 0.92194 1.25965 0.95504 0.95881 1.02411 1.70093 1.49759 1.10543 1.26974 0.85290 0.78121 0.78752 0.78192 1.19035 1.19471 1.20298 1.31598 1.20469 1.19181 1.01021 1.06811 0.76517 0.75080 0.78684 1.30275 1.13648 1.15391 1.20273 1.93505 1.86063 1.59225 1.57857 1.93462 1.63778 1.55165 1.87698 1.23449 0.98840 0.95992 0.97235 1.23315 1.03050 0.99526 0.89382 0.90316 0.89248 0.94573 0.83786 1.00751 0.99062 0.92519 0.81984 0.84201 0.82198 0.85838 0.84410 0.84250 0.86271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.67 7.82 71.98 0.56 -4.11 16 2 C 0.12 4.47 2.86 44.91 0.13 4.60 16 3 H 0.06 2.30 7.80 -2.38 -0.02 2.28 16 4 N -0.70 -32.60 4.72 -495.59 -2.34 -34.94 16 5 C 0.21 12.28 5.24 85.56 0.45 12.73 16 6 C -0.54 -33.50 9.32 25.60 0.24 -33.26 16 7 H 0.06 3.72 7.81 -2.91 -0.02 3.70 16 8 C 0.00 0.02 5.46 84.66 0.46 0.48 16 9 N -0.93 -59.33 13.29 21.45 0.28 -59.04 16 10 Si 0.97 47.47 29.54 68.60 2.03 49.50 16 11 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 12 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 13 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 14 C -0.63 -16.09 2.65 -10.80 -0.03 -16.12 16 15 S 2.44 75.75 5.08 -56.49 -0.29 75.47 16 16 C -0.64 -8.61 9.47 113.37 1.07 -7.53 16 17 O -0.97 -39.80 17.15 -127.37 -2.18 -41.99 16 18 O -1.00 -41.75 18.10 -127.37 -2.31 -44.06 16 19 C -0.12 -1.63 9.02 30.59 0.28 -1.35 16 20 C -0.11 -1.57 9.25 30.60 0.28 -1.29 16 21 H 0.08 1.90 6.73 -2.39 -0.02 1.89 16 22 H 0.09 1.85 6.96 -2.39 -0.02 1.84 16 23 H 0.04 1.21 7.45 -2.39 -0.02 1.19 16 24 H 0.34 15.27 8.46 -89.69 -0.76 14.51 16 25 H -0.03 -1.50 7.44 -2.39 -0.02 -1.52 16 26 H -0.01 -0.56 8.05 -2.39 -0.02 -0.58 16 27 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 28 H 0.16 1.09 6.63 -2.39 -0.02 1.08 16 29 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.16 1.08 6.63 -2.39 -0.02 1.06 16 31 H 0.12 1.59 5.89 -2.39 -0.01 1.58 16 32 H 0.14 0.95 6.37 -2.39 -0.02 0.93 16 33 H 0.14 0.93 6.38 -2.39 -0.02 0.91 16 34 H 0.12 1.49 7.29 -2.39 -0.02 1.48 16 Total: -1.00 -89.10 286.62 -1.01 -90.11 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.35 Total: 10.81 kcal Atomic # 6 Polarization: -49.30 SS G_CDS: 3.44 Total: -45.86 kcal Atomic # 7 Polarization: -91.93 SS G_CDS: -2.06 Total: -93.98 kcal Atomic # 8 Polarization: -81.55 SS G_CDS: -4.49 Total: -86.04 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Atomic # 16 Polarization: 75.75 SS G_CDS: -0.29 Total: 75.47 kcal Total: -89.10 -1.01 -90.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578524044.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.577 kcal (2) G-P(sol) polarization free energy of solvation -89.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds