Wall clock time and date at job start Mon Mar 30 2020 03:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47195 * 2 1 4 4 N 1.46501 * 109.46978 * 119.99729 * 2 1 3 5 5 C 1.36936 * 120.00071 * 111.62636 * 4 2 1 6 6 H 1.07997 * 120.00198 * 229.39121 * 5 4 2 7 7 C 1.38819 * 119.99691 * 49.38983 * 5 4 2 8 8 N 1.31627 * 119.99761 * 190.84789 * 7 5 4 9 9 Si 1.86788 * 120.00171 * 10.84739 * 7 5 4 10 10 H 1.48501 * 109.47489 * 83.59021 * 9 7 5 11 11 H 1.48503 * 109.47217 * 203.59195 * 9 7 5 12 12 H 1.48501 * 109.47253 * 323.58848 * 9 7 5 13 13 S 1.65603 * 120.00170 * 291.62925 * 4 2 1 14 14 O 1.42095 * 104.27890 * 138.17354 * 13 4 2 15 15 O 1.42096 * 104.27463 * 10.31316 * 13 4 2 16 16 C 1.81402 * 104.44612 * 254.24668 * 13 4 2 17 17 C 1.52997 * 115.55378 * 27.91143 * 16 13 4 18 18 C 1.53005 * 117.49918 * 242.20693 * 16 13 4 19 19 C 1.53003 * 60.00069 * 252.51368 * 18 16 13 20 20 H 1.09005 * 109.46779 * 305.02243 * 1 2 3 21 21 H 1.08998 * 109.47459 * 65.02063 * 1 2 3 22 22 H 1.08994 * 109.47388 * 185.02467 * 1 2 3 23 23 H 1.08996 * 109.46968 * 239.99238 * 2 1 3 24 24 H 1.09001 * 109.47211 * 166.24978 * 3 2 1 25 25 H 1.09002 * 109.46766 * 286.24563 * 3 2 1 26 26 H 1.08992 * 109.47105 * 46.24904 * 3 2 1 27 27 H 0.96998 * 120.00054 * 179.97438 * 8 7 5 28 28 H 1.09005 * 109.46547 * 82.79845 * 17 16 13 29 29 H 1.08993 * 109.47336 * 202.79853 * 17 16 13 30 30 H 1.09002 * 109.47215 * 322.80606 * 17 16 13 31 31 H 1.09005 * 117.49276 * 359.97438 * 18 16 13 32 32 H 1.08997 * 117.50084 * 145.01962 * 18 16 13 33 33 H 1.09004 * 117.49504 * 252.51120 * 19 18 16 34 34 H 1.08993 * 117.50083 * 107.49016 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.6586 -1.8952 1.0780 6 1 2.3587 -2.7290 1.6953 7 6 3.6931 -2.0446 0.1644 8 7 4.1652 -3.2434 -0.1049 9 14 4.4151 -0.5445 -0.6825 10 1 5.4343 0.0793 0.1992 11 1 5.0507 -0.9554 -1.9602 12 1 3.3343 0.4354 -0.9601 13 16 1.7959 -0.0144 2.6915 14 8 1.4185 -1.1071 3.5176 15 8 0.9063 1.0686 2.4574 16 6 3.4374 0.6000 3.1590 17 6 4.3543 0.9839 1.9959 18 6 4.0901 -0.0051 4.4036 19 6 3.5438 1.4235 4.4441 20 1 -0.3633 0.5898 0.8416 21 1 -0.3634 0.4340 -0.9315 22 1 -0.3634 -1.0236 0.0900 23 1 1.8933 -0.5139 -0.8899 24 1 3.1023 1.4523 0.2443 25 1 1.8901 1.8808 -0.9867 26 1 1.4912 2.0219 0.7423 27 1 4.8878 -3.3479 -0.7435 28 1 4.1157 1.9941 1.6634 29 1 5.3930 0.9452 2.3240 30 1 4.2074 0.2859 1.1717 31 1 3.5328 -0.7720 4.9416 32 1 5.1729 -0.1298 4.3939 33 1 4.2673 2.2387 4.4610 34 1 2.6276 1.5962 5.0085 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696297862.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:54 Heat of formation + Delta-G solvation = -21.591432 kcal Electronic energy + Delta-G solvation = -18235.245532 eV Core-core repulsion = 15490.521584 eV Total energy + Delta-G solvation = -2744.723949 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.98189 -38.53515 -37.71919 -36.67210 -34.51233 -32.10241 -30.24881 -27.91708 -26.12415 -23.52633 -22.97993 -22.54472 -20.08413 -18.98876 -18.41882 -17.31198 -17.18398 -16.25578 -15.83483 -15.54470 -15.18338 -14.82089 -14.65169 -14.31996 -14.12717 -13.75929 -13.28776 -13.17635 -12.85651 -12.68957 -12.66304 -12.48152 -12.37356 -12.20673 -12.05743 -11.71918 -11.38355 -11.32357 -11.01476 -10.70004 -10.48382 -9.75740 -8.43860 -6.24168 -0.30488 1.37479 1.43326 1.53024 2.07109 2.32948 2.41312 2.85514 3.15027 3.46626 3.69619 3.84012 4.02139 4.11994 4.30694 4.40586 4.54699 4.58908 4.66664 4.72352 4.76592 4.83478 4.85949 5.00596 5.05367 5.12934 5.15319 5.33740 5.47175 5.63964 5.73177 6.28453 7.02955 7.16203 8.65618 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.021926 B = 0.015053 C = 0.012759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.700424 B = 1859.665690 C = 2194.075063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.132 3.868 3 C -0.206 4.206 4 N -0.849 5.849 5 C -0.297 4.297 6 H 0.053 0.947 7 C 0.029 3.971 8 N -0.905 5.905 9 Si 0.860 3.140 10 H -0.235 1.235 11 H -0.312 1.312 12 H -0.151 1.151 13 S 2.574 3.426 14 O -1.013 7.013 15 O -0.992 6.992 16 C -0.655 4.655 17 C -0.108 4.108 18 C -0.133 4.133 19 C -0.114 4.114 20 H 0.067 0.933 21 H 0.090 0.910 22 H 0.040 0.960 23 H 0.082 0.918 24 H 0.070 0.930 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.278 0.722 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.123 0.877 33 H 0.139 0.861 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.614 12.584 1.463 12.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.026 3.974 3 C -0.263 4.263 4 N -0.678 5.678 5 C -0.435 4.435 6 H 0.071 0.929 7 C -0.178 4.178 8 N -0.543 5.543 9 Si 0.684 3.316 10 H -0.160 1.160 11 H -0.241 1.241 12 H -0.073 1.073 13 S 2.676 3.324 14 O -1.004 7.004 15 O -0.982 6.982 16 C -0.744 4.744 17 C -0.165 4.165 18 C -0.170 4.170 19 C -0.152 4.152 20 H 0.086 0.914 21 H 0.109 0.891 22 H 0.060 0.940 23 H 0.100 0.900 24 H 0.089 0.911 25 H 0.114 0.886 26 H 0.106 0.894 27 H 0.088 0.912 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.141 0.859 33 H 0.157 0.843 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.828 12.614 1.956 12.792 hybrid contribution 1.090 -0.610 -0.473 1.336 sum 1.917 12.004 1.483 12.247 Atomic orbital electron populations 1.22436 0.95510 1.01546 1.03933 1.21397 0.94295 0.93029 0.88653 1.23081 1.02167 0.95572 1.05500 1.53100 1.68409 1.26393 1.19873 1.18501 1.13484 0.87270 1.24261 0.92878 1.26552 0.94754 0.99585 0.96944 1.69911 1.26381 1.24695 1.33298 0.88021 0.83642 0.82837 0.77119 1.16047 1.24127 1.07289 1.07621 0.77638 0.72834 0.74258 1.93398 1.82655 1.53937 1.70364 1.93343 1.63665 1.56932 1.84228 1.32233 1.24163 1.18274 0.99744 1.21827 0.98111 1.02073 0.94444 1.22976 1.02384 0.97067 0.94610 1.23027 1.04306 0.95435 0.92469 0.91446 0.89137 0.94042 0.89951 0.91146 0.88554 0.89401 0.91227 0.89295 0.90581 0.92121 0.88665 0.85879 0.84312 0.87737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.44 9.17 71.98 0.66 -5.78 16 2 C 0.13 5.19 2.04 44.99 0.09 5.28 16 3 C -0.21 -6.58 6.66 71.98 0.48 -6.10 16 4 N -0.85 -39.22 1.39 -322.94 -0.45 -39.67 16 5 C -0.30 -16.07 9.28 84.04 0.78 -15.29 16 6 H 0.05 3.37 7.92 -2.91 -0.02 3.34 16 7 C 0.03 1.50 5.31 84.86 0.45 1.95 16 8 N -0.91 -51.58 13.97 21.65 0.30 -51.28 16 9 Si 0.86 34.82 21.87 68.60 1.50 36.32 16 10 H -0.24 -8.69 5.53 99.48 0.55 -8.14 16 11 H -0.31 -13.37 7.11 99.48 0.71 -12.66 16 12 H -0.15 -5.08 2.58 99.48 0.26 -4.83 16 13 S 2.57 113.64 4.97 -56.49 -0.28 113.36 16 14 O -1.01 -53.14 16.77 -127.65 -2.14 -55.28 16 15 O -0.99 -42.60 12.65 -127.65 -1.61 -44.21 16 16 C -0.66 -23.04 2.89 -10.79 -0.03 -23.07 16 17 C -0.11 -3.50 6.81 71.98 0.49 -3.01 16 18 C -0.13 -4.17 9.81 30.60 0.30 -3.87 16 19 C -0.11 -3.03 10.02 30.60 0.31 -2.72 16 20 H 0.07 2.59 5.92 -2.38 -0.01 2.58 16 21 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 22 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.08 3.25 5.38 -2.39 -0.01 3.24 16 24 H 0.07 2.17 2.36 -2.39 -0.01 2.17 16 25 H 0.10 2.42 8.12 -2.39 -0.02 2.40 16 26 H 0.09 2.89 5.79 -2.39 -0.01 2.88 16 27 H 0.28 14.76 8.31 -92.71 -0.77 13.99 16 28 H 0.09 2.38 7.11 -2.38 -0.02 2.37 16 29 H 0.08 2.20 7.92 -2.39 -0.02 2.18 16 30 H 0.06 2.26 0.66 -2.39 0.00 2.26 16 31 H 0.09 3.26 7.68 -2.38 -0.02 3.24 16 32 H 0.12 3.32 8.07 -2.39 -0.02 3.30 16 33 H 0.14 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -66.91 256.61 1.35 -65.56 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: 0.50 Total: 27.79 kcal Atomic # 6 Polarization: -56.12 SS G_CDS: 3.53 Total: -52.59 kcal Atomic # 7 Polarization: -90.80 SS G_CDS: -0.15 Total: -90.95 kcal Atomic # 8 Polarization: -95.74 SS G_CDS: -3.75 Total: -99.49 kcal Atomic # 14 Polarization: 34.82 SS G_CDS: 1.50 Total: 36.32 kcal Atomic # 16 Polarization: 113.64 SS G_CDS: -0.28 Total: 113.36 kcal Total: -66.91 1.35 -65.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696297862.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.971 kcal (2) G-P(sol) polarization free energy of solvation -66.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds