Wall clock time and date at job start Mon Mar 30 2020 04:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46685 * 2 1 4 4 C 1.50702 * 109.47321 * 120.00503 * 2 1 3 5 5 H 1.07989 * 120.00111 * 114.36003 * 4 2 1 6 6 C 1.37884 * 119.99452 * 294.36411 * 4 2 1 7 7 N 1.31510 * 119.99363 * 156.80350 * 6 4 2 8 8 Si 1.86800 * 120.00298 * 336.80039 * 6 4 2 9 9 H 1.48497 * 109.47019 * 180.02562 * 8 6 4 10 10 H 1.48500 * 109.46855 * 300.00240 * 8 6 4 11 11 H 1.48498 * 109.46880 * 60.00298 * 8 6 4 12 12 N 1.46906 * 109.46949 * 240.00300 * 2 1 3 13 13 C 1.46900 * 110.99678 * 85.00116 * 12 2 1 14 14 C 1.53780 * 113.61272 * 252.49296 * 13 12 2 15 15 C 1.53780 * 87.08345 * 220.02119 * 14 13 12 16 16 S 1.81405 * 113.61382 * 139.98141 * 15 14 13 17 17 C 1.81402 * 101.92020 * 82.50440 * 16 15 14 18 18 O 1.42104 * 108.57688 * 196.99162 * 16 15 14 19 19 O 1.42099 * 108.57840 * 328.01631 * 16 15 14 20 20 C 1.53783 * 87.08000 * 25.43332 * 15 14 13 21 21 H 1.09004 * 109.46993 * 293.04315 * 1 2 3 22 22 H 1.09002 * 109.46955 * 53.04653 * 1 2 3 23 23 H 1.09004 * 109.46803 * 173.04650 * 1 2 3 24 24 H 0.96998 * 120.00460 * 354.92819 * 7 6 4 25 25 H 1.00896 * 110.99781 * 208.95210 * 12 2 1 26 26 H 1.08999 * 112.85270 * 23.79926 * 13 12 2 27 27 H 1.09005 * 113.61808 * 334.57339 * 14 13 12 28 28 H 1.08998 * 113.61696 * 105.47117 * 14 13 12 29 29 H 1.09002 * 113.61716 * 270.88455 * 15 14 13 30 30 H 1.08996 * 109.46771 * 60.00219 * 17 16 15 31 31 H 1.09007 * 109.46565 * 179.97438 * 17 16 15 32 32 H 1.08998 * 109.46857 * 299.99971 * 17 16 15 33 33 H 1.08997 * 113.61580 * 220.01886 * 20 15 14 34 34 H 1.08998 * 113.61548 * 89.11557 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5761 -1.6386 1.1339 6 6 1.7978 -0.1756 2.4794 7 7 1.8064 -0.9533 3.5399 8 14 1.4677 1.6536 2.6652 9 1 1.2486 1.9740 4.0985 10 1 2.6343 2.4209 2.1596 11 1 0.2585 2.0201 1.8850 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 0.9910 -0.0333 -3.3995 15 6 2.0662 0.2360 -4.4655 16 16 1.9668 -0.8763 -5.8951 17 6 0.6826 -0.0813 -6.8998 18 8 3.1977 -0.8154 -6.6025 19 8 1.4813 -2.1371 -5.4548 20 6 3.1031 -0.1998 -3.4168 21 1 -0.3633 0.4023 0.9457 22 1 -0.3633 0.6178 -0.8212 23 1 -0.3633 -1.0202 -0.1244 24 1 1.9044 -1.9128 3.4369 25 1 2.9173 -1.1204 -1.0288 26 1 2.1682 1.2681 -2.0503 27 1 0.6196 -1.0582 -3.4031 28 1 0.1916 0.7075 -3.3888 29 1 2.1466 1.2854 -4.7492 30 1 1.0006 0.9272 -7.1640 31 1 0.5219 -0.6610 -7.8089 32 1 -0.2456 -0.0324 -6.3306 33 1 4.0087 0.4066 -3.4199 34 1 3.3092 -1.2701 -3.4250 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715241260.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:22 Heat of formation + Delta-G solvation = -77.111351 kcal Electronic energy + Delta-G solvation = -16452.600572 eV Core-core repulsion = 13705.469099 eV Total energy + Delta-G solvation = -2747.131473 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.103 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.10851 -37.95829 -37.01092 -36.70527 -34.09087 -30.63300 -30.19362 -27.06483 -26.57285 -25.43144 -21.67940 -20.91221 -19.66280 -19.50367 -18.00782 -17.06095 -16.90641 -16.48101 -16.28492 -15.76359 -15.27585 -14.55662 -14.14451 -13.99766 -13.88402 -13.58173 -13.49913 -13.37141 -13.15287 -13.05335 -12.96579 -12.51861 -12.36446 -12.08336 -12.04406 -11.84125 -11.64594 -11.41217 -11.05123 -10.88349 -10.38548 -9.19453 -8.74114 -6.35070 -0.86548 1.46370 1.52489 1.72374 1.89250 2.50006 2.65806 2.97305 3.00903 3.37155 3.54145 3.57206 3.75063 4.02471 4.14914 4.29529 4.50020 4.61217 4.67397 4.74131 4.86717 4.92590 4.98742 5.01738 5.06411 5.12501 5.31455 5.63776 5.84458 6.04895 6.30952 6.72022 6.78312 7.40932 8.60129 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.050718 B = 0.005020 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.941393 B = 5575.875810 C = 5659.548710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.191 3.809 3 H 0.002 0.998 4 C -0.618 4.618 5 H 0.020 0.980 6 C -0.013 4.013 7 N -0.931 5.931 8 Si 1.082 2.918 9 H -0.290 1.290 10 H -0.267 1.267 11 H -0.245 1.245 12 N -0.680 5.680 13 C 0.057 3.943 14 C -0.103 4.103 15 C -0.578 4.578 16 S 2.420 3.580 17 C -0.631 4.631 18 O -0.988 6.988 19 O -0.985 6.985 20 C -0.123 4.123 21 H 0.037 0.963 22 H 0.055 0.945 23 H 0.035 0.965 24 H 0.253 0.747 25 H 0.334 0.666 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.190 0.810 30 H 0.158 0.842 31 H 0.137 0.863 32 H 0.151 0.849 33 H 0.098 0.902 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.421 8.802 -21.317 23.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.081 3.919 3 H 0.020 0.980 4 C -0.656 4.656 5 H 0.038 0.962 6 C -0.213 4.213 7 N -0.566 5.566 8 Si 0.902 3.098 9 H -0.216 1.216 10 H -0.192 1.192 11 H -0.169 1.169 12 N -0.311 5.311 13 C -0.055 4.055 14 C -0.142 4.142 15 C -0.688 4.688 16 S 2.608 3.392 17 C -0.784 4.784 18 O -0.985 6.985 19 O -0.982 6.982 20 C -0.162 4.162 21 H 0.056 0.944 22 H 0.074 0.926 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.152 0.848 26 H 0.100 0.900 27 H 0.110 0.890 28 H 0.125 0.875 29 H 0.208 0.792 30 H 0.176 0.824 31 H 0.155 0.845 32 H 0.169 0.831 33 H 0.116 0.884 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.790 8.912 -20.549 22.717 hybrid contribution 0.988 -0.896 -0.187 1.347 sum -2.802 8.016 -20.737 22.408 Atomic orbital electron populations 1.21943 0.97119 1.00083 0.99403 1.19368 0.93009 0.91961 0.87544 0.98035 1.22308 1.40131 1.09548 0.93603 0.96183 1.27155 0.92660 1.09606 0.91841 1.70962 1.46812 1.05669 1.33150 0.83584 0.78951 0.70816 0.76421 1.21575 1.19184 1.16906 1.60665 1.32298 1.32762 1.05372 1.23180 0.96687 0.95837 0.89768 1.22918 0.95897 1.04012 0.91361 1.31457 1.05829 1.17968 1.13558 1.07511 0.76938 0.77036 0.77703 1.30023 1.17707 1.15557 1.15151 1.93522 1.44555 1.87886 1.72518 1.93554 1.82198 1.40283 1.82208 1.22961 0.97418 1.02045 0.93741 0.94443 0.92602 0.94580 0.93791 0.84800 0.90048 0.89012 0.87512 0.79239 0.82375 0.84459 0.83075 0.88381 0.90066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.38 9.12 71.98 0.66 -4.72 16 2 C 0.19 8.70 2.19 44.17 0.10 8.80 16 3 H 0.00 0.10 6.04 -2.39 -0.01 0.08 16 4 C -0.62 -34.92 8.77 25.60 0.22 -34.70 16 5 H 0.02 1.26 7.92 -2.92 -0.02 1.23 16 6 C -0.01 -0.75 5.19 84.66 0.44 -0.31 16 7 N -0.93 -58.27 13.70 21.45 0.29 -57.97 16 8 Si 1.08 48.67 26.45 68.60 1.81 50.49 16 9 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 10 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 11 H -0.24 -9.72 6.16 99.48 0.61 -9.11 16 12 N -0.68 -27.08 6.36 -470.59 -2.99 -30.07 16 13 C 0.06 1.64 4.02 45.44 0.18 1.82 16 14 C -0.10 -2.30 7.42 31.12 0.23 -2.07 16 15 C -0.58 -9.76 4.17 31.12 0.13 -9.63 16 16 S 2.42 45.21 5.34 -56.49 -0.30 44.91 16 17 C -0.63 -4.73 10.62 113.37 1.20 -3.53 16 18 O -0.99 -25.74 18.10 -127.37 -2.31 -28.04 16 19 O -0.99 -28.27 17.19 -127.37 -2.19 -30.46 16 20 C -0.12 -3.00 7.24 31.12 0.23 -2.77 16 21 H 0.04 1.63 5.48 -2.39 -0.01 1.62 16 22 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.25 16.19 8.73 -92.71 -0.81 15.38 16 25 H 0.33 13.90 8.07 -89.70 -0.72 13.18 16 26 H 0.08 2.25 7.47 -2.39 -0.02 2.23 16 27 H 0.09 2.46 7.36 -2.38 -0.02 2.44 16 28 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.19 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.16 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.15 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.08 2.23 8.10 -2.39 -0.02 2.21 16 Total: -1.00 -79.35 290.56 -2.06 -81.41 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.23 Total: 16.85 kcal Atomic # 6 Polarization: -50.50 SS G_CDS: 3.39 Total: -47.11 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -2.70 Total: -88.04 kcal Atomic # 8 Polarization: -54.00 SS G_CDS: -4.49 Total: -58.50 kcal Atomic # 14 Polarization: 48.67 SS G_CDS: 1.81 Total: 50.49 kcal Atomic # 16 Polarization: 45.21 SS G_CDS: -0.30 Total: 44.91 kcal Total: -79.35 -2.06 -81.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715241260.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.299 kcal (2) G-P(sol) polarization free energy of solvation -79.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds