Wall clock time and date at job start Mon Mar 30 2020 03:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36005 * 116.99995 * 2 1 4 4 C 1.38349 * 120.03339 * 359.72970 * 3 2 1 5 5 C 1.39086 * 119.93275 * 179.74113 * 4 3 2 6 6 N 1.39386 * 120.00223 * 180.25167 * 5 4 3 7 7 C 1.36835 * 120.00502 * 180.27652 * 6 5 4 8 8 H 1.08003 * 119.99597 * 24.46839 * 7 6 5 9 9 C 1.38728 * 120.00036 * 204.46577 * 7 6 5 10 10 N 1.31642 * 120.00007 * 15.77374 * 9 7 6 11 11 Si 1.86805 * 119.99820 * 195.76832 * 9 7 6 12 12 H 1.48497 * 109.46824 * 90.00718 * 11 9 7 13 13 H 1.48500 * 109.46727 * 210.00360 * 11 9 7 14 14 H 1.48495 * 109.47287 * 330.00414 * 11 9 7 15 15 C 1.46503 * 119.99645 * 0.27606 * 6 5 4 16 16 C 1.47203 * 109.46859 * 83.71408 * 15 6 5 17 17 N 5.65017 * 62.86920 * 29.07448 * 2 1 3 18 18 C 1.39090 * 120.00189 * 0.53108 * 5 4 3 19 19 C 1.38072 * 120.07388 * 359.72266 * 18 5 4 20 20 C 1.38806 * 120.06160 * 0.02562 * 19 18 5 21 21 N 1.40043 * 119.99869 * 179.97438 * 20 19 18 22 22 H 1.09004 * 109.46818 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47302 * 59.99794 * 1 2 3 24 24 H 1.08992 * 109.47319 * 299.99501 * 1 2 3 25 25 H 1.08006 * 120.03459 * 359.97438 * 4 3 2 26 26 H 0.96995 * 119.99581 * 179.97438 * 10 9 7 27 27 H 1.08997 * 109.47581 * 203.71364 * 15 6 5 28 28 H 1.09003 * 109.47182 * 323.71712 * 15 6 5 29 29 H 1.08007 * 119.96155 * 179.70103 * 18 5 4 30 30 H 1.07995 * 119.96884 * 180.02562 * 19 18 5 31 31 H 0.97002 * 119.99751 * 180.02562 * 21 20 19 32 32 H 0.97001 * 120.00265 * 0.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2936 2.3725 -0.0057 5 6 1.9272 3.6107 -0.0002 6 7 1.1701 4.7810 -0.0006 7 6 1.7934 5.9992 -0.0009 8 1 2.7973 6.0920 -0.3883 9 6 1.1358 7.1150 0.4963 10 7 0.0608 6.9676 1.2416 11 14 1.7760 8.8264 0.1082 12 1 1.1445 9.3193 -1.1422 13 1 1.4426 9.7449 1.2265 14 1 3.2496 8.7756 -0.0681 15 6 -0.2930 4.7069 -0.0006 16 6 -0.7754 4.5307 1.3790 17 7 -1.1476 4.3948 2.4436 18 6 3.3163 3.6811 -0.0002 19 6 4.0678 2.5229 0.0001 20 6 3.4385 1.2857 -0.0001 21 7 4.2020 0.1117 -0.0003 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 0.5137 0.8899 25 1 0.2150 2.3173 -0.0105 26 1 -0.3987 7.7478 1.5896 27 1 -0.7036 5.6280 -0.4142 28 1 -0.6140 3.8609 -0.6085 29 1 3.8076 4.6430 -0.0009 30 1 5.1463 2.5795 0.0005 31 1 3.7622 -0.7529 -0.0008 32 1 5.1707 0.1631 0.0001 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082523367.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:41 Heat of formation + Delta-G solvation = 38.843644 kcal Electronic energy + Delta-G solvation = -17692.780768 eV Core-core repulsion = 14847.526281 eV Total energy + Delta-G solvation = -2845.254487 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.52045 -37.62381 -36.07389 -34.63775 -33.16164 -31.42334 -29.47784 -27.84667 -27.59786 -25.96808 -23.64772 -21.48349 -20.55183 -17.95722 -17.57194 -16.43500 -16.10825 -15.62407 -15.47332 -15.18164 -14.51447 -14.16108 -13.84245 -13.50311 -12.66146 -12.56559 -12.36034 -12.09567 -11.82761 -11.57453 -11.19896 -11.15094 -11.00658 -10.84882 -10.62771 -10.46916 -10.38024 -10.19971 -9.83261 -9.05321 -8.07675 -7.64964 -6.46815 -6.02280 -3.82512 2.29125 2.65162 3.15960 3.20210 3.22929 3.79668 3.84027 4.09072 4.20999 4.67778 4.69911 4.98440 5.07276 5.39293 5.43301 5.53465 5.66093 5.78617 6.12071 6.22091 6.24539 6.30626 6.52196 6.61261 6.95878 7.11327 7.34479 7.41252 7.55017 7.81052 7.95323 8.41824 8.52857 8.58904 8.92970 9.21436 9.53822 10.62162 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.025848 B = 0.007688 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.008383 B = 3641.308981 C = 4496.706597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.329 6.329 3 C 0.102 3.898 4 C -0.274 4.274 5 C 0.210 3.790 6 N -0.458 5.458 7 C -0.305 4.305 8 H 0.100 0.900 9 C 0.024 3.976 10 N -0.882 5.882 11 Si 0.928 3.072 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.271 1.271 15 C 0.239 3.761 16 C 0.249 3.751 17 N -0.483 5.483 18 C -0.189 4.189 19 C -0.110 4.110 20 C 0.090 3.910 21 N -0.893 5.893 22 H 0.088 0.912 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.116 0.884 26 H 0.271 0.729 27 H 0.118 0.882 28 H 0.076 0.924 29 H 0.122 0.878 30 H 0.112 0.888 31 H 0.390 0.610 32 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.421 -7.958 -5.881 10.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.243 6.243 3 C 0.054 3.946 4 C -0.299 4.299 5 C 0.098 3.902 6 N -0.151 5.151 7 C -0.432 4.432 8 H 0.118 0.882 9 C -0.179 4.179 10 N -0.520 5.520 11 Si 0.755 3.245 12 H -0.204 1.204 13 H -0.212 1.212 14 H -0.195 1.195 15 C 0.111 3.889 16 C -0.069 4.069 17 N -0.163 5.163 18 C -0.213 4.213 19 C -0.133 4.133 20 C -0.011 4.011 21 N -0.438 5.438 22 H 0.106 0.894 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.133 0.867 26 H 0.082 0.918 27 H 0.136 0.864 28 H 0.093 0.907 29 H 0.140 0.860 30 H 0.130 0.870 31 H 0.217 0.783 32 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 1.600 -7.850 -4.209 9.050 hybrid contribution 0.296 1.001 -0.328 1.093 sum 1.895 -6.850 -4.537 8.432 Atomic orbital electron populations 1.22848 0.79499 1.02452 1.01242 1.85870 1.20455 1.27790 1.90163 1.18028 0.90003 0.83519 1.03078 1.20272 0.98613 0.90912 1.20116 1.17609 0.90872 0.85751 0.95928 1.42196 1.01201 1.02635 1.69082 1.19522 1.01893 0.83042 1.38779 0.88225 1.25297 0.97170 1.00277 0.95126 1.69840 1.20134 1.30937 1.31079 0.85891 0.79148 0.81584 0.77903 1.20353 1.21185 1.19518 1.18477 0.82800 1.02602 0.85016 1.29504 0.92129 0.89554 0.95708 1.80842 1.10240 1.13292 1.11940 1.20306 0.91848 0.97719 1.11424 1.20070 0.98152 0.90163 1.04950 1.16652 0.86963 0.87403 1.10096 1.41888 1.06896 1.05048 1.89941 0.89396 0.93119 0.93162 0.86668 0.91822 0.86433 0.90658 0.85965 0.87004 0.78287 0.78829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 9.81 101.05 0.99 1.46 16 2 O -0.33 -5.54 9.74 -19.76 -0.19 -5.73 16 3 C 0.10 1.93 6.70 -39.11 -0.26 1.66 16 4 C -0.27 -5.45 8.08 -39.23 -0.32 -5.76 16 5 C 0.21 4.56 6.47 -83.79 -0.54 4.01 16 6 N -0.46 -10.45 2.70 -116.24 -0.31 -10.76 16 7 C -0.30 -7.32 8.96 -15.14 -0.14 -7.45 16 8 H 0.10 2.32 6.23 -52.48 -0.33 2.00 16 9 C 0.02 0.59 4.95 -17.45 -0.09 0.50 16 10 N -0.88 -22.57 9.41 55.49 0.52 -22.05 16 11 Si 0.93 19.22 29.58 -169.99 -5.03 14.19 16 12 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 13 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 14 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 15 C 0.24 4.97 4.80 -6.83 -0.03 4.94 16 16 C 0.25 5.82 13.08 -20.76 -0.27 5.55 16 17 N -0.48 -12.14 18.54 42.15 0.78 -11.35 16 18 C -0.19 -3.88 9.26 -39.33 -0.36 -4.24 16 19 C -0.11 -2.01 9.88 -39.43 -0.39 -2.40 16 20 C 0.09 1.63 6.78 -83.46 -0.57 1.07 16 21 N -0.89 -12.93 9.09 32.56 0.30 -12.63 16 22 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.05 0.64 7.65 -51.93 -0.40 0.24 16 24 H 0.05 0.71 7.67 -51.93 -0.40 0.32 16 25 H 0.12 2.14 4.38 -52.48 -0.23 1.91 16 26 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 27 H 0.12 2.48 6.75 -51.93 -0.35 2.13 16 28 H 0.08 1.30 6.54 -51.93 -0.34 0.96 16 29 H 0.12 2.51 6.18 -52.48 -0.32 2.19 16 30 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 31 H 0.39 5.32 8.19 -40.82 -0.33 4.98 16 32 H 0.39 4.62 8.84 -40.82 -0.36 4.26 16 LS Contribution 276.09 15.07 4.16 4.16 Total: -1.00 -28.88 276.09 -4.79 -33.67 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -3.04 Total: 11.14 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -1.98 Total: -0.65 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: 1.29 Total: -56.79 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -0.19 Total: -5.73 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -28.88 -4.79 -33.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082523367.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.518 kcal (2) G-P(sol) polarization free energy of solvation -28.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds