Wall clock time and date at job start Mon Mar 30 2020 04:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00139 * 2 1 4 4 H 1.48506 * 109.46734 * 239.99262 * 3 2 1 5 5 H 1.48497 * 109.46810 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47038 * 119.99631 * 3 2 1 7 7 C 1.37879 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99842 * 189.58333 * 7 2 1 9 9 C 1.50700 * 120.00115 * 9.57383 * 7 2 1 10 10 H 1.08994 * 109.47218 * 185.31098 * 9 7 2 11 11 N 1.46898 * 109.47443 * 305.31536 * 9 7 2 12 12 C 1.46898 * 110.99973 * 274.99940 * 11 9 7 13 13 C 1.53790 * 113.60981 * 252.49573 * 12 11 9 14 14 C 1.53779 * 87.07856 * 220.01679 * 13 12 11 15 15 O 1.42900 * 113.68904 * 139.99198 * 14 13 12 16 16 C 1.53780 * 113.61448 * 155.00245 * 12 11 9 17 17 C 1.50703 * 109.46756 * 65.31458 * 9 7 2 18 18 C 1.38237 * 119.99772 * 272.47556 * 17 9 7 19 19 C 1.38241 * 119.99997 * 180.02562 * 18 17 9 20 20 C 1.38236 * 119.99593 * 0.07661 * 19 18 17 21 21 C 1.38229 * 120.00434 * 359.97438 * 20 19 18 22 22 C 1.38228 * 120.00142 * 92.60989 * 17 9 7 23 23 H 0.96997 * 119.99949 * 0.02562 * 1 2 3 24 24 H 1.00898 * 110.99917 * 151.03894 * 11 9 7 25 25 H 1.09002 * 112.84991 * 23.79870 * 12 11 9 26 26 H 1.08991 * 113.61662 * 334.56720 * 13 12 11 27 27 H 1.09000 * 113.60992 * 105.47316 * 13 12 11 28 28 H 1.09003 * 113.61683 * 270.88291 * 14 13 12 29 29 H 0.96700 * 114.00098 * 82.46785 * 15 14 13 30 30 H 1.09004 * 113.60907 * 254.52312 * 16 12 11 31 31 H 1.08993 * 113.62009 * 25.42485 * 16 12 11 32 32 H 1.07995 * 120.00392 * 0.11355 * 18 17 9 33 33 H 1.07998 * 120.00255 * 180.34085 * 19 18 17 34 34 H 1.08006 * 119.99551 * 179.97438 * 20 19 18 35 35 H 1.08003 * 120.00427 * 179.97438 * 21 20 19 36 36 H 1.08006 * 120.00283 * 359.97438 * 22 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0732 -1.2005 0.1562 9 6 1.2667 -2.4902 -0.2159 10 1 1.9551 -3.3257 -0.0890 11 7 0.1757 -2.6018 0.7613 12 6 0.6604 -3.1626 2.0296 13 6 0.2016 -4.6091 2.2788 14 6 -0.0068 -4.2066 3.7483 15 8 -1.1838 -4.7654 4.3352 16 6 -0.1940 -2.7656 3.2451 17 6 0.6965 -2.5166 -1.6107 18 6 -0.5517 -1.9761 -1.8574 19 6 -1.0750 -2.0008 -3.1367 20 6 -0.3508 -2.5675 -4.1688 21 6 0.8968 -3.1089 -3.9219 22 6 1.4203 -3.0838 -2.6427 23 1 -0.4850 0.8400 -0.0004 24 1 -0.5864 -3.1498 0.3914 25 1 1.7293 -3.0103 2.1787 26 1 -0.7222 -4.8693 1.7621 27 1 0.9902 -5.3479 2.1361 28 1 0.8799 -4.3412 4.3678 29 1 -1.0724 -5.6716 4.6537 30 1 0.2753 -2.0161 3.8825 31 1 -1.2259 -2.5217 2.9927 32 1 -1.1174 -1.5332 -1.0511 33 1 -2.0478 -1.5736 -3.3305 34 1 -0.7599 -2.5871 -5.1682 35 1 1.4624 -3.5520 -4.7282 36 1 2.3948 -3.5078 -2.4496 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084444758.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:05 Heat of formation + Delta-G solvation = 8.454129 kcal Electronic energy + Delta-G solvation = -18070.561266 eV Core-core repulsion = 15327.529334 eV Total energy + Delta-G solvation = -2743.031932 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.94434 -38.11296 -35.35925 -33.75078 -31.35478 -29.90922 -29.22001 -26.26942 -25.12615 -23.24751 -22.01553 -21.25849 -19.94697 -18.99970 -17.24462 -16.23027 -15.80749 -14.97735 -14.81319 -14.36356 -14.08150 -13.82518 -13.13147 -12.82610 -12.73266 -12.32423 -11.93034 -11.79568 -11.65849 -11.56304 -11.00573 -10.87806 -10.65279 -10.42024 -10.28883 -10.09566 -9.91672 -9.60060 -9.37236 -9.27113 -8.44096 -7.88215 -7.50488 -6.81136 -5.82441 -4.01092 2.40888 2.50470 3.34366 3.39103 3.42754 4.46967 4.52359 4.89490 5.07457 5.19523 5.28538 5.34528 5.55788 5.73087 5.77312 5.90854 5.99744 6.02742 6.16954 6.32655 6.35704 6.57177 6.60045 6.70839 6.73256 6.90188 6.95523 7.05201 7.21764 7.42782 7.60886 7.87972 7.88674 7.92479 8.16035 8.22480 8.46903 8.82798 9.10470 9.65279 11.11084 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.016287 B = 0.008941 C = 0.006549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.732706 B = 3130.997121 C = 4274.160485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.092 3.908 3 Si 0.877 3.123 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.525 4.525 8 H 0.053 0.947 9 C 0.250 3.750 10 H 0.000 1.000 11 N -0.626 5.626 12 C 0.093 3.907 13 C -0.204 4.204 14 C 0.069 3.931 15 O -0.563 6.563 16 C -0.111 4.111 17 C -0.043 4.043 18 C -0.081 4.081 19 C -0.143 4.143 20 C -0.152 4.152 21 C -0.141 4.141 22 C -0.133 4.133 23 H 0.254 0.746 24 H 0.311 0.689 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.368 0.632 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.159 0.841 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.824 -7.619 1.314 7.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.116 4.116 3 Si 0.705 3.295 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.205 1.205 7 C -0.563 4.563 8 H 0.071 0.929 9 C 0.143 3.857 10 H 0.018 0.982 11 N -0.254 5.254 12 C -0.020 4.020 13 C -0.244 4.244 14 C 0.010 3.990 15 O -0.367 6.367 16 C -0.150 4.150 17 C -0.044 4.044 18 C -0.099 4.099 19 C -0.161 4.161 20 C -0.171 4.171 21 C -0.159 4.159 22 C -0.152 4.152 23 H 0.065 0.935 24 H 0.129 0.871 25 H 0.110 0.890 26 H 0.102 0.898 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.214 0.786 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.177 0.823 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.185 -6.220 1.352 6.475 hybrid contribution 1.003 -0.373 -0.302 1.112 sum -0.182 -6.594 1.049 6.679 Atomic orbital electron populations 1.69987 1.05519 1.25305 1.45040 1.24830 0.94564 0.98211 0.94032 0.86930 0.80013 0.84105 0.78433 1.20514 1.21344 1.20457 1.20786 0.93124 0.90325 1.52021 0.92908 1.18174 0.88058 0.95007 0.84435 0.98223 1.60674 1.09688 1.52337 1.02728 1.22503 0.98199 0.89042 0.92215 1.24533 1.01491 1.00533 0.97804 1.23381 0.87110 0.96841 0.91663 1.86563 1.36620 1.32550 1.80940 1.23137 1.02165 0.92678 0.96992 1.20551 0.93050 0.93337 0.97447 1.21766 0.96065 0.95167 0.96914 1.21167 0.99497 1.01222 0.94217 1.20817 0.95885 1.02316 0.98044 1.20799 0.96298 1.02420 0.96369 1.20903 0.99409 1.01773 0.93069 0.93545 0.87088 0.89041 0.89842 0.92546 0.90889 0.78646 0.91694 0.89362 0.82339 0.87881 0.88164 0.87984 0.87742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.72 9.23 55.43 0.51 -21.21 16 2 C 0.09 2.41 5.20 -17.82 -0.09 2.32 16 3 Si 0.88 20.87 29.55 -169.99 -5.02 15.84 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -13.74 8.68 -34.44 -0.30 -14.04 16 8 H 0.05 1.40 7.83 -52.49 -0.41 0.99 16 9 C 0.25 5.87 2.34 -70.02 -0.16 5.70 16 10 H 0.00 0.00 7.76 -51.93 -0.40 -0.40 16 11 N -0.63 -13.64 4.46 -101.32 -0.45 -14.09 16 12 C 0.09 1.77 3.91 -66.90 -0.26 1.50 16 13 C -0.20 -3.22 7.53 -25.91 -0.20 -3.42 16 14 C 0.07 1.04 5.21 -25.92 -0.14 0.90 16 15 O -0.56 -8.18 13.67 -35.23 -0.48 -8.66 16 16 C -0.11 -2.00 7.71 -25.92 -0.20 -2.20 16 17 C -0.04 -0.97 4.65 -104.62 -0.49 -1.46 16 18 C -0.08 -1.81 7.66 -39.58 -0.30 -2.11 16 19 C -0.14 -2.86 10.05 -39.58 -0.40 -3.26 16 20 C -0.15 -2.84 10.05 -39.59 -0.40 -3.24 16 21 C -0.14 -2.66 10.05 -39.58 -0.40 -3.05 16 22 C -0.13 -2.77 9.69 -39.58 -0.38 -3.16 16 23 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 24 H 0.31 6.57 7.14 -39.29 -0.28 6.29 16 25 H 0.09 1.83 7.81 -51.93 -0.41 1.42 16 26 H 0.08 1.37 7.82 -51.93 -0.41 0.96 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.37 3.51 9.12 45.56 0.42 3.93 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.09 1.73 8.14 -51.93 -0.42 1.30 16 32 H 0.16 3.82 5.59 -52.49 -0.29 3.52 16 33 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 34 H 0.10 1.58 8.06 -52.48 -0.42 1.16 16 35 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16 36 H 0.10 2.03 8.06 -52.48 -0.42 1.61 16 LS Contribution 297.13 15.07 4.48 4.48 Total: -1.00 -27.82 297.13 -8.98 -36.80 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -4.30 Total: 12.34 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: -3.71 Total: -25.51 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.06 Total: -35.30 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: -0.48 Total: -8.66 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.82 -8.98 -36.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084444758.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.258 kcal (2) G-P(sol) polarization free energy of solvation -27.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds