Wall clock time and date at job start Mon Mar 30 2020 03:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46508 * 119.99984 * 2 1 4 4 C 1.50703 * 109.46688 * 269.99916 * 3 2 1 5 5 H 1.07999 * 120.00143 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99676 * 179.97438 * 4 3 2 7 7 N 1.31508 * 120.00199 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 120.00030 * 0.02562 * 6 4 3 9 9 H 1.48502 * 109.47269 * 89.99480 * 8 6 4 10 10 H 1.48504 * 109.47292 * 209.99673 * 8 6 4 11 11 H 1.48506 * 109.47228 * 329.99646 * 8 6 4 12 12 C 1.37784 * 120.00030 * 180.02562 * 2 1 3 13 13 N 1.30790 * 124.97415 * 359.97438 * 12 2 1 14 14 C 1.36233 * 108.67699 * 180.02562 * 13 12 2 15 15 C 1.40105 * 106.66913 * 0.02562 * 14 13 12 16 16 C 1.38683 * 119.87552 * 180.02562 * 15 14 13 17 17 C 1.38028 * 120.03409 * 359.96060 * 16 15 14 18 18 C 1.38573 * 120.51665 * 0.03918 * 17 16 15 19 19 C 1.38436 * 120.29781 * 359.97438 * 18 17 16 20 20 N 1.39788 * 120.19362 * 180.02562 * 19 18 17 21 21 O 1.34496 * 124.97384 * 180.28058 * 12 2 1 22 22 H 1.09001 * 109.46577 * 270.00154 * 1 2 3 23 23 H 1.09002 * 109.46840 * 29.99895 * 1 2 3 24 24 H 1.08993 * 109.46852 * 150.00473 * 1 2 3 25 25 H 1.08993 * 109.46712 * 29.99865 * 3 2 1 26 26 H 1.08997 * 109.46969 * 149.99942 * 3 2 1 27 27 H 0.97003 * 120.00511 * 180.02562 * 7 6 4 28 28 H 1.07999 * 119.98424 * 179.97438 * 16 15 14 29 29 H 1.08001 * 119.74753 * 180.02562 * 17 16 15 30 30 H 1.07995 * 119.85130 * 179.97438 * 18 17 16 31 31 H 0.96999 * 120.00173 * 179.97438 * 20 19 18 32 32 H 0.97001 * 119.99586 * 359.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8780 -1.6729 7 7 3.3457 3.2573 -2.9127 8 14 3.7330 3.9292 -0.2531 9 1 5.1065 3.5081 0.1229 10 1 3.7478 5.3560 -0.6646 11 1 2.8270 3.7593 0.9113 12 6 2.1540 -1.1932 -0.0005 13 7 1.6007 -2.3784 -0.0006 14 6 2.5856 -3.3196 -0.0006 15 6 3.8034 -2.6270 0.0000 16 6 4.9984 -3.3308 -0.0004 17 6 4.9873 -4.7110 -0.0006 18 6 3.7879 -5.4050 -0.0012 19 6 2.5847 -4.7202 -0.0011 20 7 1.3761 -5.4225 -0.0012 21 8 3.4938 -1.3099 0.0048 22 1 -0.3632 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5137 25 1 1.6085 2.0284 0.5138 26 1 3.1499 1.1384 0.5138 27 1 3.8225 4.0833 -3.0900 28 1 5.9382 -2.7986 -0.0003 29 1 5.9206 -5.2544 -0.0005 30 1 3.7917 -6.4849 -0.0018 31 1 0.5347 -4.9399 -0.0007 32 1 1.3788 -6.3925 -0.0017 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086895943.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:27 Heat of formation + Delta-G solvation = 53.346068 kcal Electronic energy + Delta-G solvation = -17449.381653 eV Core-core repulsion = 14604.756038 eV Total energy + Delta-G solvation = -2844.625615 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.44973 -38.08778 -36.37840 -34.24589 -33.47067 -32.55648 -29.24337 -28.64942 -27.79711 -25.76721 -22.91498 -22.62887 -21.07695 -20.39733 -17.70534 -17.29305 -17.12340 -16.18120 -16.10261 -15.99594 -14.80543 -14.60514 -14.13597 -13.81699 -13.31943 -12.97939 -12.64436 -12.50880 -12.04181 -11.85113 -11.64603 -11.37586 -11.11819 -10.90013 -10.68705 -10.29719 -10.12338 -9.78247 -9.67372 -8.86351 -8.72755 -7.57224 -6.62472 -6.21375 -4.23613 1.49217 1.71547 2.61782 3.19283 3.21980 3.25750 3.27591 3.84049 4.00384 4.14343 4.26869 4.90804 5.09171 5.15832 5.42272 5.57589 5.63064 5.75038 5.91014 6.08453 6.19474 6.22956 6.38510 6.50925 6.60428 6.73272 6.74869 6.98097 7.30161 7.40218 7.60522 7.90792 7.93308 8.30480 8.54673 8.83289 9.36304 10.91423 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.031157 B = 0.006234 C = 0.005590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.445103 B = 4490.725807 C = 5008.134816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.552 5.552 3 C 0.221 3.779 4 C -0.544 4.544 5 H 0.078 0.922 6 C 0.077 3.923 7 N -0.890 5.890 8 Si 0.874 3.126 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.264 1.264 12 C 0.518 3.482 13 N -0.563 5.563 14 C 0.004 3.996 15 C 0.029 3.971 16 C -0.139 4.139 17 C -0.075 4.075 18 C -0.210 4.210 19 C 0.249 3.751 20 N -0.871 5.871 21 O -0.221 6.221 22 H 0.047 0.953 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.044 0.956 26 H 0.031 0.969 27 H 0.267 0.733 28 H 0.125 0.875 29 H 0.130 0.870 30 H 0.124 0.876 31 H 0.403 0.597 32 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.537 -13.635 7.571 15.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.275 5.275 3 C 0.100 3.900 4 C -0.583 4.583 5 H 0.096 0.904 6 C -0.127 4.127 7 N -0.528 5.528 8 Si 0.701 3.299 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.189 1.189 12 C 0.217 3.783 13 N -0.307 5.307 14 C -0.111 4.111 15 C -0.024 4.024 16 C -0.160 4.160 17 C -0.095 4.095 18 C -0.235 4.235 19 C 0.142 3.858 20 N -0.409 5.409 21 O -0.112 6.112 22 H 0.065 0.935 23 H 0.098 0.902 24 H 0.090 0.910 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.077 0.923 28 H 0.143 0.857 29 H 0.148 0.852 30 H 0.142 0.858 31 H 0.232 0.768 32 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -2.123 -13.366 7.459 15.453 hybrid contribution 0.843 0.781 0.455 1.236 sum -1.281 -12.584 7.915 14.922 Atomic orbital electron populations 1.21568 0.76647 1.03484 1.00869 1.45730 1.05327 1.00446 1.76029 1.19874 0.91994 0.79383 0.98748 1.21383 1.37925 1.07830 0.91122 0.90380 1.24854 0.95022 0.97142 0.95666 1.69888 1.40685 1.23476 1.18710 0.86883 0.80124 0.80120 0.82814 1.19769 1.20729 1.18888 1.21464 0.77080 0.88525 0.91197 1.70870 1.29202 0.95572 1.35029 1.19117 0.89461 0.93128 1.09418 1.19814 0.96587 0.80284 1.05691 1.19540 0.94113 0.92986 1.09390 1.20433 0.97444 0.92067 0.99534 1.20239 0.90420 0.99109 1.13764 1.16765 0.87161 0.86673 0.95164 1.42343 1.05519 1.08225 1.84834 1.84527 1.24309 1.25476 1.76859 0.93483 0.90163 0.90982 0.93838 0.95129 0.92291 0.85696 0.85207 0.85796 0.76791 0.77783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.98 10.55 59.85 0.63 2.61 16 2 N -0.55 -11.88 2.94 -185.42 -0.54 -12.43 16 3 C 0.22 5.20 4.37 -5.19 -0.02 5.18 16 4 C -0.54 -15.17 9.94 -34.44 -0.34 -15.51 16 5 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 6 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 7 N -0.89 -26.73 13.96 55.43 0.77 -25.96 16 8 Si 0.87 20.55 27.47 -169.99 -4.67 15.88 16 9 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.26 -5.81 6.54 56.52 0.37 -5.44 16 12 C 0.52 11.52 8.37 -87.57 -0.73 10.78 16 13 N -0.56 -11.58 10.58 -12.00 -0.13 -11.71 16 14 C 0.00 0.08 7.09 -84.53 -0.60 -0.52 16 15 C 0.03 0.58 7.41 -38.72 -0.29 0.29 16 16 C -0.14 -2.25 10.05 -39.49 -0.40 -2.65 16 17 C -0.07 -0.99 10.02 -39.53 -0.40 -1.38 16 18 C -0.21 -2.75 9.88 -39.38 -0.39 -3.14 16 19 C 0.25 3.83 6.79 -83.47 -0.57 3.27 16 20 N -0.87 -10.44 9.10 32.57 0.30 -10.14 16 21 O -0.22 -5.05 10.14 2.35 0.02 -5.02 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 24 H 0.07 1.19 7.60 -51.93 -0.39 0.80 16 25 H 0.04 0.96 7.13 -51.93 -0.37 0.59 16 26 H 0.03 0.74 7.09 -51.93 -0.37 0.37 16 27 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 29 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.40 4.95 8.85 -40.82 -0.36 4.58 16 32 H 0.39 3.40 8.85 -40.82 -0.36 3.04 16 LS Contribution 281.16 15.07 4.24 4.24 Total: -1.00 -32.24 281.16 -6.77 -39.00 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -3.56 Total: 5.13 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -3.20 Total: 1.00 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: 0.40 Total: -60.23 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: 0.02 Total: -5.02 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.24 -6.77 -39.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086895943.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.349 kcal (2) G-P(sol) polarization free energy of solvation -32.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds