Wall clock time and date at job start Mon Mar 30 2020 03:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40045 * 120.37985 * 2 1 4 4 N 1.31349 * 120.31090 * 180.02562 * 3 2 1 5 5 C 1.33827 * 120.86301 * 359.97438 * 4 3 2 6 6 N 1.32824 * 132.49820 * 179.97438 * 5 4 3 7 7 C 1.32620 * 109.75537 * 180.02562 * 6 5 4 8 8 C 1.50697 * 125.18477 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.46613 * 195.02465 * 8 7 6 10 10 N 1.46906 * 109.46982 * 315.02251 * 8 7 6 11 11 C 1.52997 * 109.47466 * 75.02361 * 8 7 6 12 12 C 1.50699 * 109.47337 * 174.99820 * 11 8 7 13 13 H 1.08001 * 119.99707 * 0.02562 * 12 11 8 14 14 C 1.37875 * 120.00057 * 179.97438 * 12 11 8 15 15 N 1.31506 * 120.00094 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99913 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46865 * 60.00448 * 16 14 12 18 18 H 1.48503 * 109.47053 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47341 * 300.00597 * 16 14 12 20 20 N 1.31179 * 109.62334 * 0.22936 * 7 6 5 21 21 N 1.36658 * 120.28649 * 0.02562 * 5 4 3 22 22 C 1.35779 * 120.37963 * 180.02562 * 2 1 3 23 23 H 1.08993 * 109.47535 * 89.99828 * 1 2 3 24 24 H 1.09006 * 109.47076 * 210.00141 * 1 2 3 25 25 H 1.09006 * 109.47003 * 329.99551 * 1 2 3 26 26 H 1.07997 * 119.84591 * 0.04561 * 3 2 1 27 27 H 1.00896 * 111.00309 * 60.00059 * 10 8 7 28 28 H 1.00902 * 110.99923 * 183.96223 * 10 8 7 29 29 H 1.09002 * 109.47196 * 294.99972 * 11 8 7 30 30 H 1.09004 * 109.46881 * 54.99487 * 11 8 7 31 31 H 0.97006 * 120.00565 * 179.97438 * 15 14 12 32 32 H 1.07997 * 120.48669 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2153 1.2082 0.0000 4 7 3.5287 1.2066 -0.0005 5 6 4.2139 0.0570 -0.0005 6 7 5.5145 -0.2125 -0.0014 7 6 5.7003 -1.5256 -0.0015 8 6 7.0414 -2.2129 -0.0030 9 1 6.9117 -3.2619 -0.2692 10 7 7.9229 -1.5643 -0.9830 11 6 7.6669 -2.1137 1.3898 12 6 8.9491 -2.9047 1.4221 13 1 9.2846 -3.4257 0.5376 14 6 9.6945 -2.9624 2.5806 15 7 9.2863 -2.3275 3.6575 16 14 11.2836 -3.9435 2.6208 17 1 12.2281 -3.3975 1.6133 18 1 11.8908 -3.8471 3.9726 19 1 10.9950 -5.3664 2.3086 20 7 4.5385 -2.1348 -0.0057 21 7 3.5530 -1.1392 -0.0005 22 6 2.1937 -1.1714 -0.0005 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6790 2.1456 0.0007 27 1 8.0588 -0.5902 -0.7581 28 1 8.8065 -2.0469 -1.0496 29 1 7.8783 -1.0693 1.6196 30 1 6.9735 -2.5151 2.1289 31 1 9.8105 -2.3684 4.4727 32 1 1.6679 -2.1147 -0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259850445.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:02 Heat of formation + Delta-G solvation = 125.424217 kcal Electronic energy + Delta-G solvation = -17080.084674 eV Core-core repulsion = 14270.877353 eV Total energy + Delta-G solvation = -2809.207321 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.113 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.70257 -39.03072 -35.56328 -34.56178 -32.90556 -32.15184 -30.53044 -28.05463 -27.27340 -25.47134 -24.26069 -22.87576 -21.92419 -19.70045 -18.26928 -17.87258 -16.66889 -16.37413 -15.81456 -14.76987 -14.60882 -14.34570 -13.97257 -13.61519 -13.31135 -12.80086 -12.65917 -12.39472 -12.34240 -12.31860 -11.82504 -11.54315 -10.97500 -10.76891 -10.41389 -10.01124 -9.98533 -9.77902 -9.33393 -9.20422 -8.57715 -8.45310 -7.80859 -6.07381 -4.12911 0.43244 0.78135 2.04280 2.78521 3.30705 3.35269 3.37003 3.40899 3.55346 4.01612 4.17712 4.39234 4.45673 4.67703 4.93921 5.10608 5.18125 5.28125 5.43240 5.56822 5.69884 5.82193 6.07772 6.31560 6.38504 6.55238 6.63543 7.41351 7.49259 7.58211 7.85829 7.95354 8.20827 8.26676 8.32384 8.92382 9.51979 11.03618 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.048298 B = 0.004566 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.594683 B = 6131.133665 C = 6210.491201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.204 4.204 3 C 0.201 3.799 4 N -0.449 5.449 5 C 0.428 3.572 6 N -0.504 5.504 7 C 0.311 3.689 8 C 0.178 3.822 9 H 0.096 0.904 10 N -0.835 5.835 11 C 0.004 3.996 12 C -0.527 4.527 13 H 0.060 0.940 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.897 3.103 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.276 1.276 20 N -0.337 5.337 21 N -0.328 5.328 22 C 0.171 3.829 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.185 0.815 27 H 0.344 0.656 28 H 0.353 0.647 29 H 0.028 0.972 30 H 0.019 0.981 31 H 0.263 0.737 32 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.273 4.616 -7.118 20.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.212 4.212 3 C 0.013 3.987 4 N -0.162 5.162 5 C 0.067 3.933 6 N -0.235 5.235 7 C 0.031 3.969 8 C 0.064 3.936 9 H 0.114 0.886 10 N -0.366 5.366 11 C -0.036 4.036 12 C -0.565 4.565 13 H 0.078 0.922 14 C -0.141 4.141 15 N -0.528 5.528 16 Si 0.725 3.275 17 H -0.200 1.200 18 H -0.213 1.213 19 H -0.201 1.201 20 N -0.168 5.168 21 N -0.106 5.106 22 C 0.032 3.968 23 H 0.095 0.905 24 H 0.091 0.909 25 H 0.097 0.903 26 H 0.202 0.798 27 H 0.156 0.844 28 H 0.168 0.832 29 H 0.046 0.954 30 H 0.038 0.962 31 H 0.072 0.928 32 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -17.698 4.550 -7.478 19.744 hybrid contribution 0.718 -0.931 1.102 1.611 sum -16.980 3.618 -6.376 18.495 Atomic orbital electron populations 1.20555 0.87544 1.03872 1.03101 1.20497 0.98974 0.92251 1.09480 1.23438 0.88264 0.98587 0.88376 1.67965 1.08585 1.23143 1.16546 1.22882 0.89851 0.82795 0.97723 1.70742 1.09642 1.15460 1.27700 1.25042 0.95697 0.87071 0.89072 1.20073 0.82393 0.95532 0.95626 0.88598 1.59006 1.19555 1.07741 1.50307 1.19784 0.95811 0.98518 0.89469 1.21019 1.06313 1.31653 0.97564 0.92175 1.25007 0.98064 0.95490 0.95530 1.69970 1.38885 1.42167 1.01734 0.86576 0.83252 0.80526 0.77178 1.20034 1.21292 1.20131 1.78602 0.95744 1.07823 1.34632 1.48884 1.06676 1.09370 1.45707 1.21905 0.80078 1.01143 0.93653 0.90518 0.90890 0.90293 0.79784 0.84387 0.83167 0.95362 0.96243 0.92752 0.80554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.36 10.03 36.01 0.36 0.00 16 2 C -0.20 -1.72 5.86 -104.83 -0.61 -2.34 16 3 C 0.20 1.99 10.96 -17.08 -0.19 1.80 16 4 N -0.45 -7.12 10.48 -13.82 -0.14 -7.26 16 5 C 0.43 8.27 8.99 -323.14 -2.91 5.37 16 6 N -0.50 -11.29 11.06 -11.80 -0.13 -11.42 16 7 C 0.31 6.96 6.93 -157.01 -1.09 5.87 16 8 C 0.18 4.02 3.30 -68.86 -0.23 3.80 16 9 H 0.10 2.13 8.14 -51.93 -0.42 1.71 16 10 N -0.83 -17.18 9.18 -5.65 -0.05 -17.24 16 11 C 0.00 0.10 4.60 -27.89 -0.13 -0.03 16 12 C -0.53 -14.53 8.55 -34.44 -0.29 -14.83 16 13 H 0.06 1.56 7.14 -52.49 -0.37 1.19 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 15 N -0.89 -26.83 13.28 55.43 0.74 -26.09 16 16 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 20 N -0.34 -6.98 12.78 32.39 0.41 -6.57 16 21 N -0.33 -5.72 3.91 -13.84 -0.05 -5.78 16 22 C 0.17 1.96 10.97 -16.60 -0.18 1.78 16 23 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 24 H 0.07 0.23 8.09 -51.93 -0.42 -0.19 16 25 H 0.08 0.19 8.10 -51.93 -0.42 -0.23 16 26 H 0.19 0.94 8.06 -52.49 -0.42 0.51 16 27 H 0.34 7.19 8.83 -39.29 -0.35 6.85 16 28 H 0.35 6.98 7.90 -39.29 -0.31 6.67 16 29 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.18 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 284.27 15.07 4.28 4.28 Total: -1.00 -35.25 284.27 -8.88 -44.12 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -3.54 Total: 6.49 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -5.36 Total: 3.08 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: 0.77 Total: -74.36 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -35.25 -8.88 -44.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259850445.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.548 kcal (2) G-P(sol) polarization free energy of solvation -35.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds