Wall clock time and date at job start Mon Mar 30 2020 04:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99778 * 2 1 4 4 H 1.48509 * 109.46826 * 264.77292 * 3 2 1 5 5 H 1.48497 * 109.47368 * 24.76943 * 3 2 1 6 6 H 1.48496 * 109.47376 * 144.77491 * 3 2 1 7 7 C 1.37871 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00110 * 5.82021 * 7 2 1 9 9 C 1.50698 * 119.99903 * 185.82162 * 7 2 1 10 10 H 1.09007 * 109.57478 * 335.33655 * 9 7 2 11 11 C 1.53128 * 109.55919 * 95.47727 * 9 7 2 12 12 C 1.53039 * 109.31139 * 177.51902 * 11 9 7 13 13 N 1.46837 * 109.52405 * 300.83932 * 12 11 9 14 14 C 1.46850 * 111.19659 * 61.74222 * 13 12 11 15 15 C 1.53030 * 109.52549 * 298.25673 * 14 13 12 16 16 H 1.08997 * 109.50863 * 299.19780 * 15 14 13 17 17 C 1.50707 * 109.50257 * 179.11860 * 15 14 13 18 18 C 1.38265 * 119.94344 * 120.08093 * 17 15 14 19 19 C 1.38143 * 120.05502 * 179.97438 * 18 17 15 20 20 C 1.38730 * 119.94482 * 0.24861 * 19 18 17 21 21 O 1.35895 * 120.05507 * 179.74487 * 20 19 18 22 22 C 1.38733 * 119.88702 * 359.47982 * 20 19 18 23 23 C 1.38140 * 119.94449 * 0.54159 * 22 20 19 24 24 H 0.96999 * 120.00368 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46518 * 57.57607 * 11 9 7 26 26 H 1.09003 * 109.53520 * 297.50237 * 11 9 7 27 27 H 1.09000 * 109.45850 * 180.82497 * 12 11 9 28 28 H 1.09000 * 109.46052 * 60.85961 * 12 11 9 29 29 H 1.00899 * 111.00180 * 185.83581 * 13 12 11 30 30 H 1.09002 * 109.46112 * 178.23773 * 14 13 12 31 31 H 1.09000 * 109.46312 * 58.27799 * 14 13 12 32 32 H 1.08004 * 119.97055 * 0.02562 * 18 17 15 33 33 H 1.08004 * 120.02426 * 179.97438 * 19 18 17 34 34 H 0.96699 * 113.99877 * 89.99942 * 21 20 19 35 35 H 1.07997 * 120.02314 * 180.25178 * 22 20 19 36 36 H 1.07994 * 119.97579 * 179.72677 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6070 1.9827 -1.3944 5 1 1.3957 2.6821 0.5866 6 1 3.4871 1.4747 0.8075 7 6 2.0045 -1.1940 0.0005 8 1 1.4687 -2.1269 -0.0939 9 6 3.5057 -1.1973 0.1329 10 1 3.9050 -0.2443 -0.2145 11 6 3.8905 -1.4081 1.6000 12 6 5.4148 -1.4724 1.7192 13 7 5.9252 -2.5769 0.8971 14 6 5.6096 -2.3721 -0.5224 15 6 4.0912 -2.3347 -0.7086 16 1 3.6616 -3.2834 -0.3871 17 6 3.7680 -2.1029 -2.1622 18 6 3.0282 -3.0378 -2.8623 19 6 2.7302 -2.8274 -4.1947 20 6 3.1783 -1.6793 -4.8316 21 8 2.8909 -1.4725 -6.1436 22 6 3.9157 -0.7400 -4.1254 23 6 4.2114 -0.9553 -2.7933 24 1 -0.4850 0.8400 -0.0004 25 1 3.4577 -2.3421 1.9584 26 1 3.5132 -0.5789 2.1986 27 1 5.6910 -1.6371 2.7606 28 1 5.8461 -0.5329 1.3735 29 1 6.9174 -2.7001 1.0327 30 1 6.0275 -3.1902 -1.1090 31 1 6.0400 -1.4284 -0.8577 32 1 2.6822 -3.9330 -2.3669 33 1 2.1526 -3.5583 -4.7413 34 1 2.0635 -0.9953 -6.2945 35 1 4.2622 0.1564 -4.6180 36 1 4.7891 -0.2266 -2.2443 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260026977.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:35 Heat of formation + Delta-G solvation = -28.101803 kcal Electronic energy + Delta-G solvation = -18367.790091 eV Core-core repulsion = 15623.172975 eV Total energy + Delta-G solvation = -2744.617116 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.55594 -38.05627 -36.07911 -33.20503 -31.66491 -30.68147 -30.49371 -27.69264 -25.51914 -22.92608 -22.31164 -21.61547 -20.67981 -18.64026 -18.00618 -16.86777 -16.33106 -15.26891 -15.13171 -14.50927 -14.27947 -13.93843 -13.46431 -13.33811 -13.00577 -12.84172 -12.43649 -12.34638 -11.79404 -11.56682 -11.51689 -11.00655 -10.94743 -10.71802 -10.42583 -10.03655 -9.85238 -9.69377 -9.29275 -8.97838 -8.51634 -8.44125 -8.06423 -7.80908 -6.06637 -4.03462 1.79197 1.89293 3.25650 3.34000 3.34633 4.12991 4.41452 4.58997 4.68785 5.21634 5.31466 5.40613 5.50668 5.61758 5.66945 5.79776 5.88238 5.97182 6.02848 6.11952 6.21438 6.29724 6.37251 6.48776 6.61022 6.73492 6.80483 6.88696 6.97402 7.12160 7.25200 7.35403 7.44121 7.52643 7.71465 7.82156 7.99582 8.53632 8.99449 9.57573 11.07130 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.016847 B = 0.010650 C = 0.007779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.659618 B = 2628.575281 C = 3598.692342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.074 3.926 3 Si 0.867 3.133 4 H -0.276 1.276 5 H -0.291 1.291 6 H -0.266 1.266 7 C -0.499 4.499 8 H 0.073 0.927 9 C 0.025 3.975 10 H 0.028 0.972 11 C -0.110 4.110 12 C 0.054 3.946 13 N -0.687 5.687 14 C 0.065 3.935 15 C -0.037 4.037 16 H 0.079 0.921 17 C -0.031 4.031 18 C -0.094 4.094 19 C -0.142 4.142 20 C 0.079 3.921 21 O -0.506 6.506 22 C -0.144 4.144 23 C -0.100 4.100 24 H 0.262 0.738 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.019 0.981 29 H 0.331 0.669 30 H 0.065 0.935 31 H 0.024 0.976 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.383 0.617 35 H 0.118 0.882 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.310 -2.419 -4.414 10.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.127 4.127 3 Si 0.695 3.305 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.191 1.191 7 C -0.537 4.537 8 H 0.091 0.909 9 C 0.006 3.994 10 H 0.046 0.954 11 C -0.148 4.148 12 C -0.076 4.076 13 N -0.317 5.317 14 C -0.064 4.064 15 C -0.056 4.056 16 H 0.097 0.903 17 C -0.032 4.032 18 C -0.112 4.112 19 C -0.160 4.160 20 C 0.036 3.964 21 O -0.315 6.315 22 C -0.162 4.162 23 C -0.118 4.118 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.037 0.963 29 H 0.148 0.852 30 H 0.083 0.917 31 H 0.042 0.958 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.238 0.762 35 H 0.136 0.864 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 9.120 -2.992 -4.386 10.553 hybrid contribution 0.409 2.103 -0.193 2.152 sum 9.529 -0.888 -4.578 10.609 Atomic orbital electron populations 1.69900 1.06216 1.26703 1.51057 1.24982 0.94544 0.98560 0.94589 0.87019 0.80338 0.84422 0.78767 1.20142 1.21722 1.19111 1.20893 0.88916 0.94459 1.49447 0.90891 1.19243 0.96907 0.92811 0.90465 0.95386 1.21890 0.91259 1.01538 1.00139 1.22097 0.98304 0.90925 0.96233 1.60238 1.18877 1.45209 1.07416 1.22027 0.97059 0.98944 0.88378 1.20311 0.92792 1.01906 0.90633 0.90289 1.19752 0.95018 0.93210 0.95210 1.20882 0.97739 0.99466 0.93099 1.21264 1.01541 0.98139 0.95085 1.18333 1.00086 0.94832 0.83186 1.84776 1.45431 1.79567 1.21761 1.21241 1.01426 0.98952 0.94629 1.20776 1.00366 0.97133 0.93565 0.92826 0.91806 0.92613 0.92010 0.96259 0.85204 0.91693 0.95757 0.85964 0.86200 0.76185 0.86420 0.86643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.87 21.26 27.02 -169.99 -4.59 16.66 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.27 -6.22 6.78 56.52 0.38 -5.84 16 7 C -0.50 -13.36 8.22 -34.44 -0.28 -13.64 16 8 H 0.07 2.15 8.06 -52.49 -0.42 1.73 16 9 C 0.02 0.55 1.21 -91.64 -0.11 0.44 16 10 H 0.03 0.65 4.41 -51.92 -0.23 0.42 16 11 C -0.11 -2.25 5.36 -26.65 -0.14 -2.39 16 12 C 0.05 0.90 6.55 -3.84 -0.03 0.87 16 13 N -0.69 -10.74 6.85 -113.82 -0.78 -11.51 16 14 C 0.07 1.07 5.66 -3.84 -0.02 1.04 16 15 C -0.04 -0.72 2.02 -91.69 -0.19 -0.91 16 16 H 0.08 1.59 7.87 -51.93 -0.41 1.18 16 17 C -0.03 -0.60 4.14 -104.60 -0.43 -1.03 16 18 C -0.09 -1.70 9.66 -39.61 -0.38 -2.08 16 19 C -0.14 -2.42 9.99 -39.43 -0.39 -2.81 16 20 C 0.08 1.36 6.70 -39.22 -0.26 1.10 16 21 O -0.51 -7.54 13.50 -19.41 -0.26 -7.80 16 22 C -0.14 -2.52 9.99 -39.43 -0.39 -2.92 16 23 C -0.10 -1.87 8.67 -39.61 -0.34 -2.22 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.33 4.22 8.90 -39.29 -0.35 3.87 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.02 0.40 7.35 -51.93 -0.38 0.01 16 32 H 0.12 2.05 7.94 -52.48 -0.42 1.63 16 33 H 0.12 1.77 8.06 -52.48 -0.42 1.35 16 34 H 0.38 4.06 9.06 45.56 0.41 4.47 16 35 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 36 H 0.12 2.09 7.07 -52.49 -0.37 1.72 16 LS Contribution 291.77 15.07 4.40 4.40 Total: -1.00 -30.67 291.77 -7.82 -38.49 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -4.28 Total: 8.63 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: -3.08 Total: -22.56 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: -0.01 Total: -37.83 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -0.26 Total: -7.80 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.59 Total: 16.66 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.67 -7.82 -38.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260026977.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.390 kcal (2) G-P(sol) polarization free energy of solvation -30.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds