Wall clock time and date at job start Mon Mar 30 2020 03:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46505 * 120.00040 * 2 1 4 4 C 1.53001 * 109.46886 * 270.00070 * 3 2 1 5 5 C 1.50702 * 109.46881 * 179.97438 * 4 3 2 6 6 H 1.08000 * 120.00233 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99971 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00024 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00008 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47236 * 60.00333 * 9 7 5 11 11 H 1.48501 * 109.46993 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46926 * 299.99838 * 9 7 5 13 13 C 1.38698 * 120.00145 * 179.97438 * 2 1 3 14 14 C 1.39594 * 119.33664 * 5.00486 * 13 2 1 15 15 C 1.36805 * 119.48146 * 179.97438 * 14 13 2 16 16 C 1.40082 * 118.28181 * 0.02562 * 15 14 13 17 17 C 1.46320 * 133.90336 * 179.97438 * 16 15 14 18 18 N 1.29832 * 107.33800 * 180.02562 * 17 16 15 19 19 O 1.41325 * 109.71500 * 359.97438 * 18 17 16 20 20 C 1.34775 * 109.41853 * 0.02562 * 19 18 17 21 21 N 1.32266 * 119.33621 * 184.98064 * 13 2 1 22 22 H 1.08995 * 109.46781 * 270.00069 * 1 2 3 23 23 H 1.09002 * 109.46886 * 29.99764 * 1 2 3 24 24 H 1.09003 * 109.47049 * 150.00168 * 1 2 3 25 25 H 1.09002 * 109.47007 * 29.99655 * 3 2 1 26 26 H 1.08993 * 109.47283 * 150.00053 * 3 2 1 27 27 H 1.09002 * 109.46959 * 299.99614 * 4 3 2 28 28 H 1.08993 * 109.47174 * 59.99916 * 4 3 2 29 29 H 0.97003 * 120.00363 * 180.02562 * 8 7 5 30 30 H 1.08000 * 120.25758 * 0.02562 * 14 13 2 31 31 H 1.07998 * 120.85804 * 179.97438 * 15 14 13 32 32 H 1.08002 * 126.32723 * 0.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2055 3.0158 -1.4425 6 1 3.4755 3.4835 -0.5072 7 6 3.5505 3.6126 -2.6366 8 7 3.2221 3.0430 -3.7755 9 14 4.4845 5.2304 -2.6366 10 1 5.7818 5.0530 -1.9362 11 1 4.7318 5.6591 -4.0367 12 1 3.6816 6.2655 -1.9370 13 6 2.1585 -1.2011 0.0005 14 6 1.4507 -2.3996 -0.1051 15 6 2.1318 -3.5861 -0.1054 16 6 3.5280 -3.5499 0.0021 17 6 4.5699 -4.5766 0.0366 18 7 5.7105 -3.9667 0.1501 19 8 5.5017 -2.5697 0.1946 20 6 4.1820 -2.3108 0.1056 21 7 3.4773 -1.1879 0.1006 22 1 -0.3633 0.0000 1.0276 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 1.6084 2.0284 0.5138 26 1 3.1499 1.1385 0.5138 27 1 3.0416 0.9507 -1.9563 28 1 1.5001 1.8407 -1.9563 29 1 3.4652 3.4626 -4.6156 30 1 0.3738 -2.3903 -0.1868 31 1 1.6065 -4.5263 -0.1856 32 1 4.4182 -5.6443 -0.0216 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260046167.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:08 Heat of formation + Delta-G solvation = 67.009099 kcal Electronic energy + Delta-G solvation = -17238.790326 eV Core-core repulsion = 14394.757184 eV Total energy + Delta-G solvation = -2844.033141 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.77980 -40.38734 -37.44386 -35.20788 -34.97168 -33.02034 -32.13304 -30.26905 -27.97651 -26.44228 -24.56671 -23.61436 -22.97705 -21.99602 -19.22713 -18.75195 -18.18482 -17.83046 -17.26996 -16.60922 -16.17611 -15.61890 -15.07420 -14.89076 -14.64131 -14.27759 -14.14095 -13.96911 -13.70172 -13.33056 -12.98828 -12.82291 -12.61137 -12.55650 -12.40001 -11.89561 -11.83402 -11.42106 -10.86158 -10.59407 -10.41858 -10.31307 -8.62495 -8.23394 -6.36083 -0.24013 0.29867 1.04910 1.22940 1.36857 1.41322 1.48585 2.08407 2.39797 2.74593 3.05594 3.09486 3.43539 3.62865 3.89631 4.07673 4.25635 4.37169 4.52631 4.58921 4.67818 4.82241 4.89727 4.96669 5.04112 5.09002 5.37097 5.44832 5.53767 5.71490 5.90684 6.04400 6.19461 6.35640 6.79944 7.03691 7.33204 8.87655 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.024284 B = 0.005896 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.728689 B = 4748.217351 C = 5545.698705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.598 5.598 3 C 0.140 3.860 4 C 0.029 3.971 5 C -0.543 4.543 6 H 0.063 0.937 7 C 0.001 3.999 8 N -0.934 5.934 9 Si 0.967 3.033 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.259 1.259 13 C 0.449 3.551 14 C -0.261 4.261 15 C 0.061 3.939 16 C -0.326 4.326 17 C 0.164 3.836 18 N -0.328 5.328 19 O -0.148 6.148 20 C 0.304 3.696 21 N -0.596 5.596 22 H 0.081 0.919 23 H 0.072 0.928 24 H 0.098 0.902 25 H 0.082 0.918 26 H 0.057 0.943 27 H -0.026 1.026 28 H -0.002 1.002 29 H 0.264 0.736 30 H 0.184 0.816 31 H 0.204 0.796 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.883 -16.429 8.523 20.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.307 5.307 3 C 0.017 3.983 4 C -0.009 4.009 5 C -0.581 4.581 6 H 0.081 0.919 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.791 3.209 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.183 1.183 13 C 0.208 3.792 14 C -0.284 4.284 15 C 0.035 3.965 16 C -0.335 4.335 17 C -0.036 4.036 18 N -0.081 5.081 19 O -0.145 6.145 20 C 0.119 3.881 21 N -0.329 5.329 22 H 0.100 0.900 23 H 0.090 0.910 24 H 0.116 0.884 25 H 0.101 0.899 26 H 0.075 0.925 27 H -0.008 1.008 28 H 0.016 0.984 29 H 0.072 0.928 30 H 0.201 0.799 31 H 0.221 0.779 32 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -7.179 -15.419 8.529 19.027 hybrid contribution -0.088 0.675 -0.589 0.900 sum -7.267 -14.744 7.941 18.255 Atomic orbital electron populations 1.22105 0.75507 1.04610 1.03415 1.47044 1.07074 1.02695 1.73855 1.21422 0.96024 0.83208 0.97682 1.19161 0.94800 0.94412 0.92523 1.21531 1.36617 1.07069 0.92929 0.91924 1.25978 0.96814 1.01787 0.95088 1.70102 1.48086 1.41162 0.98006 0.85479 0.79045 0.79111 0.77294 1.19825 1.20708 1.18292 1.18664 0.85829 0.88143 0.86583 1.21566 1.03276 0.89969 1.13639 1.21125 0.89336 1.00179 0.85855 1.21538 0.97936 0.91139 1.22921 1.26722 0.87075 1.02604 0.87165 1.79993 1.21617 0.81952 1.24509 1.89130 1.20042 1.23475 1.81849 1.20264 0.85971 0.90794 0.91080 1.65772 1.08135 1.30056 1.28933 0.90035 0.90969 0.88350 0.89930 0.92455 1.00759 0.98403 0.92771 0.79904 0.77936 0.71271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.91 10.26 127.77 1.31 3.22 16 2 N -0.60 -20.78 2.98 -728.79 -2.17 -22.96 16 3 C 0.14 6.07 5.40 86.38 0.47 6.53 16 4 C 0.03 1.61 5.30 29.85 0.16 1.77 16 5 C -0.54 -32.06 9.11 25.60 0.23 -31.83 16 6 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 7 C 0.00 0.07 5.46 84.65 0.46 0.54 16 8 N -0.93 -58.84 13.29 21.45 0.28 -58.55 16 9 Si 0.97 45.82 29.54 68.60 2.03 47.85 16 10 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 12 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 13 C 0.45 15.74 7.37 133.32 0.98 16.72 16 14 C -0.26 -5.97 9.20 22.26 0.20 -5.77 16 15 C 0.06 1.12 10.17 22.38 0.23 1.35 16 16 C -0.33 -8.57 6.36 -20.18 -0.13 -8.70 16 17 C 0.16 3.34 12.32 87.09 1.07 4.41 16 18 N -0.33 -10.25 12.82 -53.00 -0.68 -10.93 16 19 O -0.15 -6.11 12.06 30.40 0.37 -5.75 16 20 C 0.30 11.88 8.64 85.13 0.74 12.61 16 21 N -0.60 -25.69 9.06 -305.70 -2.77 -28.46 16 22 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.07 1.75 8.07 -2.39 -0.02 1.73 16 24 H 0.10 1.61 5.94 -2.39 -0.01 1.60 16 25 H 0.08 3.21 8.07 -2.39 -0.02 3.19 16 26 H 0.06 2.74 7.27 -2.39 -0.02 2.72 16 27 H -0.03 -1.66 8.14 -2.39 -0.02 -1.68 16 28 H 0.00 -0.14 8.14 -2.39 -0.02 -0.15 16 29 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 30 H 0.18 2.61 5.97 -2.91 -0.02 2.60 16 31 H 0.20 1.21 8.06 -2.91 -0.02 1.19 16 32 H 0.27 1.53 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -84.52 282.55 3.92 -80.60 By element: Atomic # 1 Polarization: -3.80 SS G_CDS: 1.14 Total: -2.66 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 5.73 Total: 0.86 kcal Atomic # 7 Polarization: -115.57 SS G_CDS: -5.34 Total: -120.90 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: 0.37 Total: -5.75 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -84.52 3.92 -80.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260046167.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.613 kcal (2) G-P(sol) polarization free energy of solvation -84.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds