Wall clock time and date at job start Mon Mar 30 2020 04:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 120.00084 * 2 1 4 4 H 1.48501 * 109.46789 * 270.00141 * 3 2 1 5 5 H 1.48503 * 109.46838 * 29.99724 * 3 2 1 6 6 H 1.48498 * 109.47228 * 149.99989 * 3 2 1 7 7 C 1.37875 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99847 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00214 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47282 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.47087 * 303.74669 * 10 9 7 12 12 N 1.46896 * 109.47217 * 63.75006 * 10 9 7 13 13 C 1.50702 * 109.47041 * 183.75038 * 10 9 7 14 14 C 1.38260 * 119.99570 * 267.18010 * 13 10 9 15 15 C 1.38217 * 119.99654 * 180.25837 * 14 13 10 16 16 C 1.38261 * 120.00134 * 359.50683 * 15 14 13 17 17 C 1.38205 * 119.99617 * 0.45186 * 16 15 14 18 18 C 1.38208 * 120.00481 * 87.15721 * 13 10 9 19 19 C 1.50701 * 119.99711 * 359.97438 * 18 13 10 20 20 O 1.42901 * 115.54979 * 278.06713 * 19 18 13 21 21 C 1.52998 * 117.50029 * 132.36059 * 19 18 13 22 22 C 1.52998 * 60.00099 * 252.50590 * 21 19 18 23 23 H 0.96999 * 120.00125 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46976 * 59.99840 * 9 7 2 25 25 H 1.09002 * 109.47216 * 300.00430 * 9 7 2 26 26 H 1.00902 * 111.00214 * 59.99611 * 12 10 9 27 27 H 1.00893 * 111.00496 * 183.95839 * 12 10 9 28 28 H 1.07997 * 120.00124 * 359.97438 * 14 13 10 29 29 H 1.07999 * 119.99667 * 179.72612 * 15 14 13 30 30 H 1.07992 * 120.00066 * 180.27508 * 16 15 14 31 31 H 1.08002 * 120.00030 * 179.83484 * 17 16 15 32 32 H 0.96699 * 113.99981 * 325.58865 * 20 19 18 33 33 H 1.09002 * 117.49881 * 359.97438 * 21 19 18 34 34 H 1.08998 * 117.50219 * 145.01732 * 21 19 18 35 35 H 1.09001 * 117.50063 * 252.50853 * 22 21 19 36 36 H 1.09010 * 117.51320 * 107.47708 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0001 11 1 3.6048 -3.1692 0.8548 12 7 3.6068 -3.3027 -1.2417 13 6 5.5257 -2.6375 0.0924 14 6 6.2890 -2.6710 -1.0599 15 6 7.6685 -2.6772 -0.9751 16 6 8.2853 -2.6397 0.2618 17 6 7.5223 -2.6053 1.4136 18 6 6.1423 -2.6043 1.3289 19 6 5.3103 -2.5667 2.5849 20 8 4.8227 -1.2777 2.9628 21 6 5.6800 -3.5393 3.7066 22 6 4.4162 -3.7735 2.8766 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6795 0.8895 25 1 3.8745 -0.6807 -0.8905 26 1 3.9807 -2.8273 -2.0494 27 1 3.8757 -4.2751 -1.2377 28 1 5.8072 -2.6969 -2.0261 29 1 8.2647 -2.7079 -1.8751 30 1 9.3632 -2.6401 0.3279 31 1 8.0040 -2.5787 2.3798 32 1 5.4279 -0.5523 2.7565 33 1 6.5247 -4.2068 3.5360 34 1 5.5515 -3.1961 4.7331 35 1 3.4563 -3.5844 3.3570 36 1 4.4295 -4.5947 2.1597 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260307198.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:51 Heat of formation + Delta-G solvation = 7.940718 kcal Electronic energy + Delta-G solvation = -18342.640059 eV Core-core repulsion = 15599.585864 eV Total energy + Delta-G solvation = -2743.054195 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.09660 -37.41722 -35.46207 -33.81953 -32.32068 -30.65845 -29.84994 -28.76581 -24.64425 -23.39820 -22.41980 -21.53689 -20.30425 -19.58574 -17.68030 -16.65554 -15.80778 -15.58125 -14.96081 -14.72462 -14.36256 -14.16824 -13.91860 -13.49143 -13.00052 -12.73486 -12.54129 -12.28499 -12.07581 -11.48339 -11.40585 -11.20413 -11.09584 -10.96953 -10.34215 -10.08234 -9.96201 -9.63716 -9.12222 -8.99726 -8.79953 -8.42518 -8.35775 -7.97285 -5.85188 -3.78575 1.36789 1.49171 3.39623 3.46876 3.50074 3.80401 3.88909 4.20791 4.59050 4.59719 4.94875 5.01852 5.09135 5.15394 5.27173 5.41331 5.50778 5.64236 5.68314 5.73387 5.78991 6.01148 6.03578 6.09432 6.27946 6.30938 6.47447 6.54891 6.60908 6.83833 7.07041 7.24884 7.42381 7.87197 7.88777 8.00469 8.12280 8.77159 9.27255 9.77754 11.28935 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.021029 B = 0.008460 C = 0.007589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.180693 B = 3308.865257 C = 3688.677588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.062 3.938 3 Si 0.873 3.127 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.486 4.486 8 H 0.079 0.921 9 C 0.002 3.998 10 C 0.134 3.866 11 H 0.096 0.904 12 N -0.820 5.820 13 C -0.076 4.076 14 C -0.131 4.131 15 C -0.110 4.110 16 C -0.139 4.139 17 C -0.101 4.101 18 C -0.088 4.088 19 C 0.107 3.893 20 O -0.508 6.508 21 C -0.200 4.200 22 C -0.151 4.151 23 H 0.259 0.741 24 H 0.032 0.968 25 H 0.003 0.997 26 H 0.332 0.668 27 H 0.323 0.677 28 H 0.122 0.878 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.378 0.622 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.239 -6.631 2.552 18.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.137 4.137 3 Si 0.701 3.299 4 H -0.208 1.208 5 H -0.217 1.217 6 H -0.192 1.192 7 C -0.524 4.524 8 H 0.097 0.903 9 C -0.035 4.035 10 C 0.023 3.977 11 H 0.113 0.887 12 N -0.347 5.347 13 C -0.078 4.078 14 C -0.149 4.149 15 C -0.128 4.128 16 C -0.157 4.157 17 C -0.120 4.120 18 C -0.089 4.089 19 C 0.065 3.935 20 O -0.312 6.312 21 C -0.237 4.237 22 C -0.187 4.187 23 H 0.069 0.931 24 H 0.050 0.950 25 H 0.021 0.979 26 H 0.146 0.854 27 H 0.134 0.866 28 H 0.140 0.860 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.225 0.775 33 H 0.112 0.888 34 H 0.117 0.883 35 H 0.126 0.874 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 15.795 -6.673 2.974 17.403 hybrid contribution 1.998 1.204 -0.445 2.374 sum 17.793 -5.469 2.529 18.785 Atomic orbital electron populations 1.69906 1.06111 1.26287 1.52625 1.24971 0.94647 0.98634 0.95477 0.86888 0.80461 0.84488 0.78014 1.20841 1.21664 1.19218 1.20995 0.88753 0.94442 1.48224 0.90314 1.19627 0.97933 0.89553 0.96388 1.20760 0.84506 0.99284 0.93197 0.88665 1.58796 1.67278 1.04800 1.03846 1.21377 0.99856 0.94561 0.92017 1.21041 0.93744 1.01830 0.98329 1.21126 0.94664 0.99499 0.97518 1.21005 0.99426 1.02748 0.92533 1.20982 0.92993 0.99533 0.98445 1.19310 0.92958 1.03446 0.93195 1.19685 0.99554 0.83198 0.91035 1.86606 1.46803 1.14153 1.83661 1.23645 0.99413 1.03294 0.97395 1.23202 0.95997 0.97262 1.02286 0.93131 0.94991 0.97889 0.85401 0.86566 0.86049 0.86348 0.86348 0.86222 0.77485 0.88821 0.88301 0.87410 0.88117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.97 13.96 55.43 0.77 -28.19 16 2 C 0.06 1.86 5.47 -17.82 -0.10 1.77 16 3 Si 0.87 22.52 27.47 -169.99 -4.67 17.85 16 4 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.27 -6.59 6.54 56.52 0.37 -6.22 16 7 C -0.49 -14.14 9.36 -34.44 -0.32 -14.46 16 8 H 0.08 2.51 7.99 -52.49 -0.42 2.09 16 9 C 0.00 0.06 3.68 -27.88 -0.10 -0.04 16 10 C 0.13 2.64 2.48 -68.86 -0.17 2.47 16 11 H 0.10 1.98 5.14 -51.93 -0.27 1.71 16 12 N -0.82 -15.06 8.56 -5.66 -0.05 -15.11 16 13 C -0.08 -1.25 5.02 -104.62 -0.53 -1.78 16 14 C -0.13 -1.91 9.28 -39.58 -0.37 -2.28 16 15 C -0.11 -1.37 10.05 -39.58 -0.40 -1.77 16 16 C -0.14 -1.65 10.05 -39.58 -0.40 -2.04 16 17 C -0.10 -1.30 9.37 -39.59 -0.37 -1.67 16 18 C -0.09 -1.34 5.15 -104.62 -0.54 -1.88 16 19 C 0.11 1.66 2.21 -91.77 -0.20 1.46 16 20 O -0.51 -8.92 12.35 -35.23 -0.43 -9.35 16 21 C -0.20 -2.57 9.84 -26.73 -0.26 -2.83 16 22 C -0.15 -2.27 8.13 -26.73 -0.22 -2.49 16 23 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 24 H 0.03 0.79 5.64 -51.93 -0.29 0.50 16 25 H 0.00 0.07 7.57 -51.93 -0.39 -0.32 16 26 H 0.33 5.70 7.19 -39.29 -0.28 5.41 16 27 H 0.32 4.98 9.06 -39.30 -0.36 4.63 16 28 H 0.12 1.64 6.32 -52.49 -0.33 1.31 16 29 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 30 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.12 1.29 7.98 -52.49 -0.42 0.87 16 32 H 0.38 5.48 8.97 45.56 0.41 5.89 16 33 H 0.09 1.05 8.05 -51.93 -0.42 0.63 16 34 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 36 H 0.10 1.43 7.87 -51.92 -0.41 1.02 16 LS Contribution 295.65 15.07 4.46 4.46 Total: -1.00 -33.34 295.65 -7.94 -41.28 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -4.04 Total: 14.61 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: -3.97 Total: -25.54 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: 0.73 Total: -43.30 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -0.43 Total: -9.35 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.67 Total: 17.85 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.34 -7.94 -41.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260307198.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.219 kcal (2) G-P(sol) polarization free energy of solvation -33.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds