Wall clock time and date at job start Mon Mar 30 2020 03:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31563 * 118.66395 * 2 1 4 4 C 1.33134 * 120.70139 * 179.97438 * 3 2 1 5 5 C 1.40949 * 118.83091 * 359.97438 * 4 3 2 6 6 C 1.41095 * 107.03095 * 180.02562 * 5 4 3 7 7 N 1.30282 * 108.48913 * 0.02562 * 6 5 4 8 8 N 1.36349 * 134.63266 * 180.02562 * 4 3 2 9 9 C 1.46499 * 125.87703 * 359.97438 * 8 4 3 10 10 C 1.40882 * 118.25071 * 0.02562 * 5 4 3 11 11 N 1.38058 * 120.81967 * 179.97438 * 10 5 4 12 12 C 1.46499 * 120.00436 * 354.10314 * 11 10 5 13 13 C 1.36906 * 120.00070 * 174.10030 * 11 10 5 14 14 H 1.08000 * 119.99583 * 30.98830 * 13 11 10 15 15 C 1.38857 * 120.00256 * 211.27299 * 13 11 10 16 16 N 1.31524 * 120.00127 * 17.79378 * 15 13 11 17 17 Si 1.86808 * 120.00003 * 197.79973 * 15 13 11 18 18 H 1.48499 * 109.46996 * 89.99410 * 17 15 13 19 19 H 1.48499 * 109.46891 * 209.99665 * 17 15 13 20 20 H 1.48498 * 109.46589 * 329.99481 * 17 15 13 21 21 N 1.32053 * 118.66783 * 180.27290 * 2 1 3 22 22 H 1.08995 * 109.47348 * 90.00192 * 1 2 3 23 23 H 1.09001 * 109.46999 * 209.99613 * 1 2 3 24 24 H 1.08996 * 109.47743 * 329.99513 * 1 2 3 25 25 H 1.08000 * 125.75392 * 179.97438 * 6 5 4 26 26 H 1.09005 * 109.46861 * 90.00612 * 9 8 4 27 27 H 1.09001 * 109.47262 * 209.99910 * 9 8 4 28 28 H 1.08996 * 109.47549 * 330.00348 * 9 8 4 29 29 H 1.08999 * 109.47519 * 185.17083 * 12 11 10 30 30 H 1.08995 * 109.46871 * 305.17611 * 12 11 10 31 31 H 1.09009 * 109.46985 * 65.17221 * 12 11 10 32 32 H 0.97000 * 120.00014 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1380 1.1544 0.0000 4 6 3.4685 1.2017 0.0005 5 6 4.1917 -0.0081 0.0016 6 6 5.5617 0.3294 0.0025 7 7 5.6674 1.6279 0.0026 8 7 4.3914 2.2055 0.0011 9 6 4.0986 3.6409 0.0008 10 6 3.4686 -1.2172 0.0016 11 7 4.1231 -2.4328 0.0021 12 6 5.5816 -2.4796 -0.1277 13 6 3.4092 -3.5946 0.1239 14 1 2.4039 -3.6540 -0.2663 15 6 3.9755 -4.6946 0.7543 16 7 5.0255 -4.5393 1.5308 17 14 3.2459 -6.3953 0.4992 18 1 3.8955 -7.0425 -0.6688 19 1 3.4755 -7.2195 1.7130 20 1 1.7867 -6.2757 0.2508 21 7 2.1405 -1.1586 -0.0055 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5139 25 1 6.3841 -0.3707 0.0039 26 1 4.0254 3.9970 1.0284 27 1 4.8984 4.1748 -0.5125 28 1 3.1543 3.8191 -0.5136 29 1 5.9070 -3.5174 -0.1992 30 1 5.8839 -1.9413 -1.0259 31 1 6.0392 -2.0148 0.7458 32 1 5.4213 -5.3078 1.9708 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260358495.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:45 Heat of formation + Delta-G solvation = 112.698502 kcal Electronic energy + Delta-G solvation = -17867.814552 eV Core-core repulsion = 15058.055403 eV Total energy + Delta-G solvation = -2809.759149 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.113 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.60890 -39.75081 -38.36728 -34.85201 -33.72672 -32.96652 -32.07114 -29.22127 -28.32696 -27.45546 -26.47472 -23.43510 -22.66190 -21.70421 -19.76453 -18.67996 -17.77864 -17.57216 -16.91548 -16.40115 -15.72709 -15.46640 -15.17046 -14.99124 -14.76791 -14.26700 -13.66105 -13.53497 -13.46774 -13.07334 -13.03601 -12.89447 -12.60160 -12.46230 -12.19129 -12.08838 -11.95384 -11.32063 -10.98714 -10.19327 -9.74791 -9.71689 -8.87685 -8.45912 -5.99501 0.09615 0.79575 1.39158 1.45404 1.46736 1.57490 1.61226 2.18946 2.66877 2.81905 3.25230 3.33736 3.49984 3.97841 4.13855 4.19455 4.44807 4.45546 4.52239 4.59843 4.66963 4.71025 4.88938 4.91860 5.03926 5.11388 5.37412 5.42757 5.62680 5.86662 6.10731 6.37460 6.59777 6.73964 7.13604 7.37857 7.86722 8.53705 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.028508 B = 0.007630 C = 0.006164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.952999 B = 3668.727132 C = 4541.199179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.382 3.618 3 N -0.628 5.628 4 C 0.355 3.645 5 C -0.373 4.373 6 C 0.101 3.899 7 N -0.299 5.299 8 N -0.395 5.395 9 C 0.112 3.888 10 C 0.419 3.581 11 N -0.395 5.395 12 C 0.108 3.892 13 C -0.327 4.327 14 H 0.095 0.905 15 C 0.001 3.999 16 N -0.883 5.883 17 Si 0.997 3.003 18 H -0.264 1.264 19 H -0.278 1.278 20 H -0.266 1.266 21 N -0.630 5.630 22 H 0.096 0.904 23 H 0.084 0.916 24 H 0.095 0.905 25 H 0.209 0.791 26 H 0.077 0.923 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.526 6.571 -2.991 7.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.109 3.891 3 N -0.365 5.365 4 C 0.109 3.891 5 C -0.392 4.392 6 C -0.092 4.092 7 N -0.115 5.115 8 N -0.187 5.187 9 C -0.028 4.028 10 C 0.167 3.833 11 N -0.081 5.081 12 C -0.035 4.035 13 C -0.456 4.456 14 H 0.113 0.887 15 C -0.204 4.204 16 N -0.518 5.518 17 Si 0.820 3.180 18 H -0.189 1.189 19 H -0.203 1.203 20 H -0.190 1.190 21 N -0.364 5.364 22 H 0.115 0.885 23 H 0.102 0.898 24 H 0.114 0.886 25 H 0.225 0.775 26 H 0.095 0.905 27 H 0.122 0.878 28 H 0.111 0.889 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.263 7.376 -2.867 8.014 hybrid contribution 0.317 -1.409 0.184 1.456 sum -0.946 5.968 -2.683 6.611 Atomic orbital electron populations 1.20523 0.83452 1.04200 1.04409 1.23471 0.98610 0.81531 0.85528 1.67332 1.04911 1.30276 1.33942 1.19164 0.89707 0.87602 0.92647 1.19619 0.96090 0.94862 1.28649 1.24150 0.95529 0.92996 0.96551 1.76779 0.99934 1.09185 1.25617 1.48385 1.00663 1.06170 1.63465 1.21966 1.03520 0.73426 1.03875 1.18435 0.88394 0.84974 0.91514 1.42783 1.06440 1.01998 1.56910 1.21892 0.78495 1.03758 0.99323 1.19942 1.01122 0.87885 1.36676 0.88731 1.26322 0.97054 1.03913 0.93076 1.70108 1.23227 1.33135 1.25327 0.84858 0.79001 0.76039 0.78111 1.18905 1.20340 1.19025 1.67823 1.07619 1.29726 1.31220 0.88548 0.89753 0.88592 0.77512 0.90478 0.87822 0.88919 0.89776 0.91981 0.92715 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.05 10.29 71.24 0.73 -1.31 16 2 C 0.38 16.28 7.63 138.74 1.06 17.34 16 3 N -0.63 -26.94 10.35 -185.88 -1.92 -28.86 16 4 C 0.36 15.61 8.05 134.17 1.08 16.69 16 5 C -0.37 -17.19 5.88 -21.27 -0.13 -17.31 16 6 C 0.10 4.00 10.38 85.62 0.89 4.89 16 7 N -0.30 -11.50 12.45 -56.49 -0.70 -12.21 16 8 N -0.40 -14.94 4.05 -366.62 -1.48 -16.42 16 9 C 0.11 2.90 11.47 127.77 1.47 4.36 16 10 C 0.42 21.02 7.37 133.65 0.98 22.00 16 11 N -0.39 -19.78 3.05 -539.95 -1.65 -21.43 16 12 C 0.11 4.61 7.53 127.77 0.96 5.57 16 13 C -0.33 -17.03 9.14 84.05 0.77 -16.26 16 14 H 0.09 5.10 7.55 -2.91 -0.02 5.08 16 15 C 0.00 0.05 4.83 84.89 0.41 0.47 16 16 N -0.88 -44.34 11.42 21.65 0.25 -44.09 16 17 Si 1.00 38.86 29.59 68.60 2.03 40.89 16 18 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 19 H -0.28 -10.60 7.11 99.48 0.71 -9.89 16 20 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 21 N -0.63 -31.00 9.33 -184.79 -1.72 -32.72 16 22 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 23 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 24 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 25 H 0.21 7.02 5.37 -2.91 -0.02 7.00 16 26 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 27 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.09 2.23 8.14 -2.39 -0.02 2.22 16 29 H 0.08 3.73 6.17 -2.39 -0.01 3.71 16 30 H 0.06 2.29 7.04 -2.39 -0.02 2.27 16 31 H 0.05 2.29 6.81 -2.38 -0.02 2.27 16 32 H 0.28 13.08 8.31 -92.71 -0.77 12.31 16 Total: -1.00 -64.98 274.23 4.17 -60.81 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 1.15 Total: 17.59 kcal Atomic # 6 Polarization: 28.21 SS G_CDS: 8.23 Total: 36.44 kcal Atomic # 7 Polarization: -148.50 SS G_CDS: -7.24 Total: -155.73 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.89 kcal Total: -64.98 4.17 -60.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260358495.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.512 kcal (2) G-P(sol) polarization free energy of solvation -64.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds