Wall clock time and date at job start Mon Mar 30 2020 04:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 120.00128 * 2 1 4 4 H 1.48501 * 109.46506 * 270.00241 * 3 2 1 5 5 H 1.48500 * 109.46803 * 29.99677 * 3 2 1 6 6 H 1.48495 * 109.46955 * 149.99792 * 3 2 1 7 7 C 1.37884 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99802 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99780 * 0.02562 * 7 2 1 10 10 H 1.08995 * 110.28941 * 60.67109 * 9 7 2 11 11 C 1.54385 * 110.32645 * 298.54687 * 9 7 2 12 12 N 1.48556 * 104.59520 * 217.15155 * 11 9 7 13 13 C 1.48566 * 104.22488 * 39.48059 * 12 11 9 14 14 C 1.54264 * 110.41036 * 182.85864 * 9 7 2 15 15 H 1.08995 * 110.31937 * 237.83980 * 14 9 7 16 16 C 1.53002 * 110.31992 * 0.04384 * 14 9 7 17 17 C 1.50703 * 109.46778 * 182.09360 * 16 14 9 18 18 C 1.38268 * 119.94162 * 269.72755 * 17 16 14 19 19 C 1.38149 * 120.05387 * 179.72818 * 18 17 16 20 20 C 1.38729 * 119.94062 * 0.56686 * 19 18 17 21 21 O 1.35898 * 120.05212 * 179.68542 * 20 19 18 22 22 C 1.38733 * 119.89260 * 359.70574 * 20 19 18 23 23 C 1.38148 * 119.94138 * 359.97438 * 22 20 19 24 24 H 0.97006 * 120.00145 * 359.97438 * 1 2 3 25 25 H 1.08997 * 110.41336 * 98.37147 * 11 9 7 26 26 H 1.09001 * 110.50872 * 335.97632 * 11 9 7 27 27 H 1.00899 * 111.00016 * 279.92429 * 12 11 9 28 28 H 1.08999 * 110.41049 * 79.29303 * 13 12 11 29 29 H 1.08999 * 110.41330 * 201.74251 * 13 12 11 30 30 H 1.08995 * 109.46897 * 302.09072 * 16 14 9 31 31 H 1.09000 * 109.47160 * 62.09243 * 16 14 9 32 32 H 1.08004 * 119.97381 * 359.97239 * 18 17 16 33 33 H 1.07998 * 120.02496 * 180.29810 * 19 18 17 34 34 H 0.96703 * 114.00216 * 270.02208 * 21 20 19 35 35 H 1.07998 * 120.02784 * 180.02562 * 22 20 19 36 36 H 1.07996 * 119.96856 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6287 -2.5763 -0.8910 11 6 0.3832 -2.6174 1.2719 12 7 0.4607 -4.0530 1.6459 13 6 1.8753 -4.4230 1.3825 14 6 2.2325 -3.6870 0.0733 15 1 2.0920 -4.3471 -0.7826 16 6 3.6757 -3.1815 0.1246 17 6 4.6191 -4.3565 0.1434 18 6 5.0171 -4.9028 1.3496 19 6 5.8775 -5.9835 1.3694 20 6 6.3514 -6.5131 0.1780 21 8 7.2028 -7.5722 0.1950 22 6 5.9550 -5.9596 -1.0308 23 6 5.0892 -4.8832 -1.0454 24 1 -0.4850 0.8401 0.0004 25 1 -0.6474 -2.3358 1.0563 26 1 0.7878 -1.9944 2.0697 27 1 -0.1685 -4.6073 1.0848 28 1 2.5151 -4.0827 2.1966 29 1 1.9679 -5.5009 1.2500 30 1 3.8771 -2.5678 -0.7534 31 1 3.8200 -2.5852 1.0256 32 1 4.6520 -4.4868 2.2770 33 1 6.1842 -6.4128 2.3117 34 1 8.1372 -7.3252 0.2278 35 1 6.3222 -6.3705 -1.9596 36 1 4.7807 -4.4517 -1.9861 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260894905.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:12 Heat of formation + Delta-G solvation = -42.108416 kcal Electronic energy + Delta-G solvation = -17816.280612 eV Core-core repulsion = 15071.056124 eV Total energy + Delta-G solvation = -2745.224489 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.84266 -39.61589 -37.63081 -34.66582 -33.66003 -31.87537 -30.64677 -29.18574 -26.19974 -25.94084 -23.74788 -22.70294 -22.08405 -20.53867 -19.26889 -18.14483 -17.32849 -16.65355 -16.47109 -16.42017 -15.98383 -15.10168 -14.97088 -14.75211 -14.51257 -14.20692 -13.73115 -13.47947 -13.21956 -13.04683 -12.80645 -12.65606 -12.36813 -12.32283 -11.87435 -11.64361 -11.40095 -11.28852 -11.02821 -10.73914 -10.51306 -9.86889 -9.44847 -9.25107 -8.10092 -6.16498 0.36019 0.47187 1.42001 1.44196 1.52669 2.45120 2.75759 3.23038 3.38186 3.63810 3.94974 3.98224 4.14167 4.21786 4.35719 4.42954 4.53764 4.64966 4.78809 4.86765 4.92526 5.02463 5.04288 5.18174 5.23059 5.30362 5.43490 5.46489 5.52155 5.62089 5.71959 5.85555 5.88180 5.96283 5.99771 6.40847 6.62932 6.91966 6.93737 7.50861 9.00009 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.028222 B = 0.005962 C = 0.005272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.911971 B = 4694.985097 C = 5309.332136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.011 3.989 3 Si 0.947 3.053 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.264 1.264 7 C -0.524 4.524 8 H 0.080 0.920 9 C 0.017 3.983 10 H -0.008 1.008 11 C 0.081 3.919 12 N -0.683 5.683 13 C 0.058 3.942 14 C -0.101 4.101 15 H 0.054 0.946 16 C -0.046 4.046 17 C -0.090 4.090 18 C -0.106 4.106 19 C -0.146 4.146 20 C 0.088 3.912 21 O -0.509 6.509 22 C -0.147 4.147 23 C -0.112 4.112 24 H 0.258 0.742 25 H 0.039 0.961 26 H 0.043 0.957 27 H 0.331 0.669 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.130 0.870 33 H 0.142 0.858 34 H 0.408 0.592 35 H 0.141 0.859 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.607 -10.865 0.526 16.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.188 4.188 3 Si 0.774 3.226 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.098 0.902 9 C -0.003 4.003 10 H 0.011 0.989 11 C -0.049 4.049 12 N -0.309 5.309 13 C -0.072 4.072 14 C -0.121 4.121 15 H 0.072 0.928 16 C -0.083 4.083 17 C -0.090 4.090 18 C -0.124 4.124 19 C -0.164 4.164 20 C 0.043 3.957 21 O -0.322 6.322 22 C -0.165 4.165 23 C -0.130 4.130 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.146 0.854 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.148 0.852 33 H 0.160 0.840 34 H 0.266 0.734 35 H 0.158 0.842 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 11.977 -11.009 1.282 16.318 hybrid contribution 0.331 1.514 -1.195 1.957 sum 12.307 -9.495 0.087 15.544 Atomic orbital electron populations 1.70095 1.07327 1.27019 1.51887 1.25771 0.95504 1.02343 0.95172 0.85709 0.78967 0.79942 0.77997 1.20504 1.21577 1.18861 1.21835 0.94137 0.90717 1.49561 0.90248 1.19945 0.93222 0.93604 0.93573 0.98938 1.22631 0.98589 0.87149 0.96517 1.63437 1.05945 1.04662 1.56850 1.22987 0.89839 0.98703 0.95683 1.22342 0.95231 0.96614 0.97884 0.92786 1.20473 0.91864 0.93613 1.02383 1.20258 0.97453 0.97572 0.93709 1.21108 0.97361 0.96064 0.97867 1.21564 0.99698 0.96574 0.98566 1.18526 0.95752 0.88960 0.92428 1.84769 1.21069 1.29943 1.96425 1.21544 1.00048 0.96506 0.98439 1.21093 0.97375 0.96414 0.98139 0.93349 0.94228 0.93824 0.85436 0.90996 0.90707 0.91761 0.91691 0.85180 0.84009 0.73373 0.84151 0.85435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.06 12.35 21.45 0.26 -52.80 16 2 C 0.01 0.57 5.33 84.66 0.45 1.02 16 3 Si 0.95 42.79 29.54 68.60 2.03 44.82 16 4 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 7 C -0.52 -27.25 7.58 25.60 0.19 -27.06 16 8 H 0.08 3.92 4.76 -2.91 -0.01 3.90 16 9 C 0.02 0.80 2.99 -10.64 -0.03 0.77 16 10 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 11 C 0.08 3.85 6.02 86.45 0.52 4.37 16 12 N -0.68 -26.79 7.62 -500.84 -3.82 -30.61 16 13 C 0.06 2.03 6.06 86.45 0.52 2.56 16 14 C -0.10 -3.89 3.08 -9.90 -0.03 -3.92 16 15 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 16 C -0.05 -1.63 3.22 29.85 0.10 -1.53 16 17 C -0.09 -2.66 4.88 -19.85 -0.10 -2.76 16 18 C -0.11 -2.81 8.86 22.26 0.20 -2.61 16 19 C -0.15 -3.40 9.99 22.37 0.22 -3.17 16 20 C 0.09 2.02 6.70 22.51 0.15 2.17 16 21 O -0.51 -9.78 13.50 -92.40 -1.25 -11.02 16 22 C -0.15 -3.47 9.99 22.37 0.22 -3.25 16 23 C -0.11 -3.02 9.69 22.25 0.22 -2.81 16 24 H 0.26 14.25 8.31 -92.70 -0.77 13.48 16 25 H 0.04 2.04 7.94 -2.39 -0.02 2.02 16 26 H 0.04 2.26 7.86 -2.39 -0.02 2.24 16 27 H 0.33 11.90 8.92 -89.69 -0.80 11.10 16 28 H 0.07 2.52 6.86 -2.39 -0.02 2.51 16 29 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.06 2.44 6.89 -2.39 -0.02 2.43 16 31 H 0.06 2.46 7.19 -2.39 -0.02 2.45 16 32 H 0.13 3.28 7.33 -2.91 -0.02 3.25 16 33 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 34 H 0.41 3.66 9.06 -74.06 -0.67 2.98 16 35 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16 36 H 0.13 3.28 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -61.24 292.45 -0.51 -61.75 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: -0.37 Total: 24.07 kcal Atomic # 6 Polarization: -38.85 SS G_CDS: 2.64 Total: -36.21 kcal Atomic # 7 Polarization: -79.85 SS G_CDS: -3.55 Total: -83.41 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -1.25 Total: -11.02 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -61.24 -0.51 -61.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260894905.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.644 kcal (2) G-P(sol) polarization free energy of solvation -61.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds