Wall clock time and date at job start Mon Mar 30 2020 04:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09007 * 110.27451 * 299.36274 * 9 7 2 11 11 C 1.53997 * 110.31103 * 61.45455 * 9 7 2 12 12 N 1.47897 * 107.05762 * 117.69135 * 11 9 7 13 13 C 1.48531 * 105.82184 * 25.33145 * 12 11 9 14 14 C 1.54600 * 110.31032 * 177.17073 * 9 7 2 15 15 H 1.09005 * 110.71896 * 337.48635 * 14 9 7 16 16 C 1.52998 * 110.72262 * 100.76711 * 14 9 7 17 17 C 1.50700 * 109.46897 * 185.00328 * 16 14 9 18 18 C 1.38268 * 119.94486 * 269.72621 * 17 16 14 19 19 C 1.38141 * 120.05473 * 179.72493 * 18 17 16 20 20 C 1.38732 * 119.94773 * 0.55311 * 19 18 17 21 21 O 1.35897 * 120.05908 * 179.75086 * 20 19 18 22 22 C 1.38729 * 119.88380 * 359.72082 * 20 19 18 23 23 C 1.38147 * 119.95032 * 0.02562 * 22 20 19 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.91619 * 237.04622 * 11 9 7 26 26 H 1.08999 * 109.91150 * 358.14157 * 11 9 7 27 27 H 1.00893 * 111.00161 * 145.84927 * 12 11 9 28 28 H 1.08994 * 110.66898 * 79.23107 * 13 12 11 29 29 H 1.09006 * 110.66853 * 202.19363 * 13 12 11 30 30 H 1.09002 * 109.47542 * 305.00168 * 16 14 9 31 31 H 1.09003 * 109.47376 * 65.00212 * 16 14 9 32 32 H 1.07998 * 119.96569 * 0.02562 * 18 17 16 33 33 H 1.08005 * 120.02375 * 180.27085 * 19 18 17 34 34 H 0.96708 * 113.99577 * 269.97464 * 21 20 19 35 35 H 1.07999 * 120.02790 * 180.02562 * 22 20 19 36 36 H 1.07995 * 119.97630 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6283 -2.5758 0.8909 11 6 0.3856 -2.6167 -1.2689 12 7 0.8803 -3.7878 -2.0246 13 6 1.5155 -4.6790 -1.0204 14 6 2.2368 -3.6880 -0.0727 15 1 3.1903 -3.3731 -0.4969 16 6 2.4370 -4.3100 1.3106 17 6 3.4921 -5.3830 1.2309 18 6 3.1294 -6.6888 0.9567 19 6 4.0953 -7.6731 0.8775 20 6 5.4292 -7.3528 1.0847 21 8 6.3807 -8.3203 1.0124 22 6 5.7899 -6.0430 1.3654 23 6 4.8208 -5.0612 1.4384 24 1 -0.4850 0.8401 0.0004 25 1 -0.6583 -2.7664 -0.9935 26 1 0.4848 -1.7135 -1.8710 27 1 0.1240 -4.2582 -2.4985 28 1 0.7601 -5.2484 -0.4790 29 1 2.2311 -5.3484 -1.4980 30 1 2.7547 -3.5395 2.0131 31 1 1.4987 -4.7477 1.6515 32 1 2.0904 -6.9383 0.7994 33 1 3.8119 -8.6921 0.6589 34 1 6.5604 -8.7591 1.8552 35 1 6.8276 -5.7910 1.5267 36 1 5.1012 -4.0413 1.6564 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260894918.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:18 Heat of formation + Delta-G solvation = -29.302810 kcal Electronic energy + Delta-G solvation = -17631.362647 eV Core-core repulsion = 14886.693452 eV Total energy + Delta-G solvation = -2744.669196 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.71652 -37.92989 -36.56861 -32.68682 -32.35191 -30.87304 -29.12407 -27.73520 -25.01348 -23.91242 -22.69030 -21.37251 -20.09041 -18.94184 -18.36192 -16.45891 -15.75621 -15.59051 -15.30279 -15.05356 -14.53291 -13.99214 -13.55486 -13.34152 -12.74420 -12.49163 -12.36172 -11.95987 -11.83726 -11.54132 -11.38511 -11.13077 -10.81536 -10.74208 -10.41438 -10.36102 -10.01242 -9.83970 -9.12480 -8.91563 -8.86103 -8.42925 -8.22122 -7.55780 -6.02539 -4.04627 1.36756 1.47658 3.31128 3.38306 3.42272 3.74866 4.25426 4.44595 4.98074 5.05929 5.13971 5.24788 5.30873 5.52453 5.54553 5.69971 5.85243 5.95664 6.03987 6.09194 6.19462 6.31684 6.43868 6.49349 6.51448 6.65593 6.78455 6.91443 6.94095 7.03244 7.15371 7.46837 7.64857 7.75309 7.86776 8.01499 8.23999 8.45995 8.97598 9.59271 11.07247 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.029640 B = 0.005533 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.437930 B = 5058.990197 C = 5700.098504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.282 1.282 5 H -0.274 1.274 6 H -0.287 1.287 7 C -0.505 4.505 8 H 0.057 0.943 9 C 0.048 3.952 10 H 0.030 0.970 11 C 0.065 3.935 12 N -0.680 5.680 13 C 0.044 3.956 14 C -0.078 4.078 15 H 0.075 0.925 16 C -0.071 4.071 17 C -0.068 4.068 18 C -0.104 4.104 19 C -0.144 4.144 20 C 0.084 3.916 21 O -0.502 6.502 22 C -0.143 4.143 23 C -0.101 4.101 24 H 0.260 0.740 25 H 0.013 0.987 26 H 0.080 0.920 27 H 0.316 0.684 28 H 0.025 0.975 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.384 0.616 35 H 0.124 0.876 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.226 -13.287 4.007 15.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.199 1.199 6 H -0.213 1.213 7 C -0.544 4.544 8 H 0.075 0.925 9 C 0.029 3.971 10 H 0.048 0.952 11 C -0.063 4.063 12 N -0.308 5.308 13 C -0.085 4.085 14 C -0.097 4.097 15 H 0.093 0.907 16 C -0.109 4.109 17 C -0.069 4.069 18 C -0.122 4.122 19 C -0.163 4.163 20 C 0.040 3.960 21 O -0.312 6.312 22 C -0.161 4.161 23 C -0.119 4.119 24 H 0.070 0.930 25 H 0.031 0.969 26 H 0.098 0.902 27 H 0.129 0.871 28 H 0.043 0.957 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.239 0.761 35 H 0.142 0.858 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.696 -12.676 3.136 14.674 hybrid contribution -0.420 0.406 0.895 1.069 sum 6.276 -12.270 4.031 14.359 Atomic orbital electron populations 1.69966 1.05893 1.26562 1.50722 1.24982 0.94843 0.99086 0.95163 0.86621 0.79993 0.83579 0.77993 1.20784 1.19863 1.21296 1.21152 0.92796 0.90099 1.50312 0.92511 1.19536 0.92159 0.92086 0.93314 0.95237 1.22775 0.95229 0.91963 0.96382 1.63172 1.32084 1.08368 1.27158 1.23025 0.96991 0.95077 0.93441 1.22166 1.00378 0.95527 0.91617 0.90700 1.20690 0.95838 0.95310 0.99072 1.20216 0.95014 0.94732 0.96893 1.20959 0.99222 0.92302 0.99715 1.21339 0.92186 1.00019 1.02708 1.18426 0.87520 0.88050 1.02038 1.84840 1.57749 1.52059 1.36504 1.21376 0.99957 0.92784 1.01983 1.21042 0.92183 0.99315 0.99407 0.93035 0.96863 0.90165 0.87060 0.95684 0.92041 0.90306 0.91656 0.85852 0.85941 0.76143 0.85837 0.85363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.34 12.31 55.43 0.68 -24.65 16 2 C 0.06 1.66 5.07 -17.82 -0.09 1.57 16 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.51 -13.62 8.38 -34.44 -0.29 -13.91 16 8 H 0.06 1.52 7.57 -52.49 -0.40 1.13 16 9 C 0.05 1.17 2.50 -90.41 -0.23 0.94 16 10 H 0.03 0.77 7.85 -51.93 -0.41 0.36 16 11 C 0.07 1.55 6.32 -2.76 -0.02 1.54 16 12 N -0.68 -13.95 7.51 -110.09 -0.83 -14.77 16 13 C 0.04 0.82 6.25 -1.90 -0.01 0.81 16 14 C -0.08 -1.57 2.56 -88.76 -0.23 -1.80 16 15 H 0.07 1.64 7.70 -51.93 -0.40 1.24 16 16 C -0.07 -1.21 4.73 -27.88 -0.13 -1.34 16 17 C -0.07 -1.03 4.96 -104.60 -0.52 -1.55 16 18 C -0.10 -1.41 9.16 -39.61 -0.36 -1.77 16 19 C -0.14 -1.83 9.99 -39.43 -0.39 -2.22 16 20 C 0.08 1.08 6.70 -39.22 -0.26 0.82 16 21 O -0.50 -5.65 13.50 -19.42 -0.26 -5.91 16 22 C -0.14 -1.87 9.99 -39.43 -0.39 -2.26 16 23 C -0.10 -1.45 9.69 -39.60 -0.38 -1.84 16 24 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.08 2.17 7.11 -51.93 -0.37 1.80 16 27 H 0.32 5.64 8.92 -39.30 -0.35 5.29 16 28 H 0.02 0.43 7.94 -51.93 -0.41 0.02 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.08 1.38 8.08 -51.93 -0.42 0.96 16 31 H 0.06 1.05 7.93 -51.93 -0.41 0.64 16 32 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 34 H 0.38 2.34 9.06 45.56 0.41 2.75 16 35 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 36 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 299.48 15.07 4.51 4.51 Total: -1.00 -29.97 299.48 -8.65 -38.62 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -4.43 Total: 7.04 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: -3.31 Total: -21.02 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: -0.14 Total: -39.43 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: -0.26 Total: -5.91 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.97 -8.65 -38.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260894918.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.322 kcal (2) G-P(sol) polarization free energy of solvation -29.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds