Wall clock time and date at job start Mon Mar 30 2020 04:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09007 * 110.27451 * 299.36274 * 9 7 2 11 11 C 1.53997 * 110.31103 * 61.45455 * 9 7 2 12 12 N 1.47897 * 107.05762 * 117.69135 * 11 9 7 13 13 C 1.48531 * 105.82184 * 25.33145 * 12 11 9 14 14 C 1.54600 * 110.31032 * 177.17073 * 9 7 2 15 15 H 1.09005 * 110.71896 * 337.48635 * 14 9 7 16 16 C 1.52998 * 110.72262 * 100.76711 * 14 9 7 17 17 C 1.50700 * 109.46897 * 185.00328 * 16 14 9 18 18 C 1.38268 * 119.94486 * 269.72621 * 17 16 14 19 19 C 1.38141 * 120.05473 * 179.72493 * 18 17 16 20 20 C 1.38732 * 119.94773 * 0.55311 * 19 18 17 21 21 O 1.35897 * 120.05908 * 179.75086 * 20 19 18 22 22 C 1.38729 * 119.88380 * 359.72082 * 20 19 18 23 23 C 1.38147 * 119.95032 * 0.02562 * 22 20 19 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.91619 * 237.04622 * 11 9 7 26 26 H 1.08999 * 109.91150 * 358.14157 * 11 9 7 27 27 H 1.00893 * 111.00161 * 145.84927 * 12 11 9 28 28 H 1.08994 * 110.66898 * 79.23107 * 13 12 11 29 29 H 1.09006 * 110.66853 * 202.19363 * 13 12 11 30 30 H 1.09002 * 109.47542 * 305.00168 * 16 14 9 31 31 H 1.09003 * 109.47376 * 65.00212 * 16 14 9 32 32 H 1.07998 * 119.96569 * 0.02562 * 18 17 16 33 33 H 1.08005 * 120.02375 * 180.27085 * 19 18 17 34 34 H 0.96708 * 113.99577 * 269.97464 * 21 20 19 35 35 H 1.07999 * 120.02790 * 180.02562 * 22 20 19 36 36 H 1.07995 * 119.97630 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6283 -2.5758 0.8909 11 6 0.3856 -2.6167 -1.2689 12 7 0.8803 -3.7878 -2.0246 13 6 1.5155 -4.6790 -1.0204 14 6 2.2368 -3.6880 -0.0727 15 1 3.1903 -3.3731 -0.4969 16 6 2.4370 -4.3100 1.3106 17 6 3.4921 -5.3830 1.2309 18 6 3.1294 -6.6888 0.9567 19 6 4.0953 -7.6731 0.8775 20 6 5.4292 -7.3528 1.0847 21 8 6.3807 -8.3203 1.0124 22 6 5.7899 -6.0430 1.3654 23 6 4.8208 -5.0612 1.4384 24 1 -0.4850 0.8401 0.0004 25 1 -0.6583 -2.7664 -0.9935 26 1 0.4848 -1.7135 -1.8710 27 1 0.1240 -4.2582 -2.4985 28 1 0.7601 -5.2484 -0.4790 29 1 2.2311 -5.3484 -1.4980 30 1 2.7547 -3.5395 2.0131 31 1 1.4987 -4.7477 1.6515 32 1 2.0904 -6.9383 0.7994 33 1 3.8119 -8.6921 0.6589 34 1 6.5604 -8.7591 1.8552 35 1 6.8276 -5.7910 1.5267 36 1 5.1012 -4.0413 1.6564 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260894918.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:17 Heat of formation + Delta-G solvation = -50.044789 kcal Electronic energy + Delta-G solvation = -17632.262087 eV Core-core repulsion = 14886.693452 eV Total energy + Delta-G solvation = -2745.568635 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.77739 -39.44991 -37.66120 -34.72209 -33.71221 -31.88115 -30.79221 -29.29352 -26.63843 -25.66120 -23.72052 -22.57516 -21.75871 -20.65386 -19.27671 -18.42700 -17.13374 -16.84546 -16.60497 -16.43469 -16.05272 -15.57890 -14.63927 -14.57503 -14.25052 -14.05229 -13.81312 -13.59688 -13.31504 -13.06719 -12.73676 -12.66515 -12.58488 -12.46246 -12.21676 -11.68085 -11.54994 -11.30686 -10.93401 -10.84912 -10.53204 -9.87419 -9.32468 -9.24714 -8.13123 -6.21261 0.34390 0.46586 1.40663 1.42443 1.52195 2.43976 2.74285 3.18894 3.36995 3.60909 3.89353 3.94074 4.13367 4.15110 4.36908 4.48559 4.52609 4.54744 4.65945 4.79608 4.82450 4.95664 5.07935 5.09156 5.17974 5.28139 5.33974 5.47879 5.51451 5.57833 5.76161 5.79684 5.84135 5.97786 6.14526 6.40138 6.67842 6.89162 6.91977 7.45788 8.96172 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.029640 B = 0.005533 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.437930 B = 5058.990197 C = 5700.098504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.014 3.986 3 Si 0.950 3.050 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.285 1.285 7 C -0.521 4.521 8 H 0.050 0.950 9 C 0.041 3.959 10 H 0.006 0.994 11 C 0.079 3.921 12 N -0.685 5.685 13 C 0.053 3.947 14 C -0.069 4.069 15 H 0.053 0.947 16 C -0.061 4.061 17 C -0.086 4.086 18 C -0.103 4.103 19 C -0.146 4.146 20 C 0.089 3.911 21 O -0.509 6.509 22 C -0.149 4.149 23 C -0.113 4.113 24 H 0.260 0.740 25 H 0.005 0.995 26 H 0.043 0.957 27 H 0.334 0.666 28 H 0.046 0.954 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.137 0.863 33 H 0.145 0.855 34 H 0.408 0.592 35 H 0.138 0.862 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.257 -15.077 4.054 17.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.199 1.199 5 H -0.196 1.196 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.069 0.931 9 C 0.022 3.978 10 H 0.025 0.975 11 C -0.050 4.050 12 N -0.314 5.314 13 C -0.076 4.076 14 C -0.088 4.088 15 H 0.072 0.928 16 C -0.098 4.098 17 C -0.086 4.086 18 C -0.121 4.121 19 C -0.164 4.164 20 C 0.045 3.955 21 O -0.322 6.322 22 C -0.167 4.167 23 C -0.131 4.131 24 H 0.069 0.931 25 H 0.023 0.977 26 H 0.061 0.939 27 H 0.149 0.851 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.155 0.845 33 H 0.163 0.837 34 H 0.267 0.733 35 H 0.156 0.844 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 7.739 -14.494 3.197 16.739 hybrid contribution -0.682 0.874 0.886 1.419 sum 7.056 -13.621 4.082 15.874 Atomic orbital electron populations 1.70073 1.07125 1.27238 1.51548 1.25703 0.95627 1.02248 0.94912 0.85670 0.78745 0.79713 0.78245 1.19943 1.19577 1.21041 1.21468 0.92749 0.91653 1.50085 0.93139 1.19505 0.92802 0.93091 0.92446 0.97549 1.22387 0.94774 0.92075 0.95804 1.63044 1.32733 1.08227 1.27421 1.23024 0.97416 0.94457 0.92730 1.21995 0.98259 0.94565 0.94025 0.92812 1.20480 0.97126 0.95593 0.96625 1.20029 0.94546 0.94865 0.99202 1.21100 1.00259 0.91657 0.99074 1.21578 0.91880 1.00875 1.02054 1.18544 0.88003 0.88250 1.00746 1.84776 1.57203 1.51711 1.38528 1.21540 1.00451 0.92823 1.01933 1.21110 0.92461 0.99647 0.99885 0.93066 0.97656 0.93862 0.85050 0.93552 0.90300 0.91818 0.90830 0.84476 0.83700 0.73320 0.84372 0.85799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.48 12.31 21.45 0.26 -53.22 16 2 C 0.01 0.77 5.07 84.66 0.43 1.19 16 3 Si 0.95 44.10 29.54 68.60 2.03 46.13 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 6 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 7 C -0.52 -28.87 8.38 25.60 0.21 -28.65 16 8 H 0.05 2.78 7.57 -2.91 -0.02 2.76 16 9 C 0.04 2.03 2.50 -10.66 -0.03 2.00 16 10 H 0.01 0.35 7.85 -2.38 -0.02 0.33 16 11 C 0.08 3.85 6.32 86.45 0.55 4.40 16 12 N -0.69 -27.51 7.51 -502.22 -3.77 -31.28 16 13 C 0.05 1.86 6.25 86.65 0.54 2.40 16 14 C -0.07 -2.80 2.56 -9.59 -0.02 -2.82 16 15 H 0.05 2.38 7.70 -2.38 -0.02 2.36 16 16 C -0.06 -2.04 4.73 29.85 0.14 -1.90 16 17 C -0.09 -2.49 4.96 -19.85 -0.10 -2.59 16 18 C -0.10 -2.53 9.16 22.25 0.20 -2.32 16 19 C -0.15 -3.22 9.99 22.36 0.22 -3.00 16 20 C 0.09 2.04 6.70 22.51 0.15 2.19 16 21 O -0.51 -9.76 13.50 -92.39 -1.25 -11.01 16 22 C -0.15 -3.63 9.99 22.37 0.22 -3.41 16 23 C -0.11 -3.14 9.69 22.26 0.22 -2.93 16 24 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 25 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 26 H 0.04 2.41 7.11 -2.39 -0.02 2.39 16 27 H 0.33 11.41 8.92 -89.70 -0.80 10.61 16 28 H 0.05 1.46 7.94 -2.39 -0.02 1.44 16 29 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 30 H 0.06 2.29 8.08 -2.39 -0.02 2.27 16 31 H 0.07 2.31 7.93 -2.39 -0.02 2.29 16 32 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 33 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 34 H 0.41 3.54 9.06 -74.05 -0.67 2.86 16 35 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 36 H 0.12 3.44 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -64.56 299.48 -0.38 -64.93 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -0.39 Total: 19.88 kcal Atomic # 6 Polarization: -38.18 SS G_CDS: 2.74 Total: -35.44 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -3.51 Total: -84.50 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -1.25 Total: -11.01 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -64.56 -0.38 -64.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260894918.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.890 kcal (2) G-P(sol) polarization free energy of solvation -64.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds