Wall clock time and date at job start Mon Mar 30 2020 03:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47298 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00283 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99762 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00337 * 179.97438 * 13 12 11 16 16 H 1.09005 * 115.54443 * 325.71800 * 15 13 12 17 17 C 1.53000 * 117.49948 * 111.38401 * 15 13 12 18 18 C 1.52997 * 117.49964 * 180.02562 * 15 13 12 19 19 H 1.08999 * 117.50012 * 359.97438 * 18 15 13 20 20 C 1.53007 * 117.49707 * 145.02099 * 18 15 13 21 21 F 1.39902 * 109.47053 * 299.99810 * 20 18 15 22 22 F 1.39895 * 109.47114 * 59.99935 * 20 18 15 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 25 25 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 26 26 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 27 27 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 28 28 H 1.09002 * 109.46807 * 299.99709 * 11 10 9 29 29 H 1.08992 * 109.47112 * 59.99408 * 11 10 9 30 30 H 0.96997 * 119.99674 * 359.97438 * 12 11 10 31 31 H 1.09001 * 117.50023 * 214.97549 * 17 15 13 32 32 H 1.08999 * 117.49899 * 0.02562 * 17 15 13 33 33 H 1.09003 * 109.46785 * 180.02562 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4322 -6.1007 -0.0006 13 6 1.9830 -7.3713 -0.0015 14 8 0.7906 -7.5929 -0.0024 15 6 2.9622 -8.5168 -0.0014 16 1 3.8857 -8.3457 -0.5547 17 6 3.0443 -9.3760 1.2619 18 6 2.3897 -9.9356 -0.0031 19 1 1.3048 -10.0406 -0.0039 20 6 3.1574 -11.0062 -0.7813 21 9 3.2354 -10.6375 -2.1286 22 9 4.4481 -11.1290 -0.2559 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6240 -2.5568 -0.8903 26 1 2.8719 -3.6044 -0.8906 27 1 2.8719 -3.6044 0.8894 28 1 0.8533 -5.0451 0.8886 29 1 0.8539 -5.0446 -0.8913 30 1 3.3858 -5.9234 -0.0002 31 1 4.0217 -9.7707 1.5395 32 1 2.3898 -9.1130 2.0928 33 1 2.6375 -11.9605 -0.6957 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337810272.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:05 Heat of formation + Delta-G solvation = -137.347086 kcal Electronic energy + Delta-G solvation = -17152.497625 eV Core-core repulsion = 13848.913748 eV Total energy + Delta-G solvation = -3303.583877 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.112 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.26629 -47.25438 -39.93002 -36.88388 -35.32156 -33.33256 -31.25435 -28.09324 -26.84732 -24.41019 -22.60273 -21.43903 -20.74652 -19.80767 -18.24492 -17.40770 -17.24361 -16.61355 -16.26561 -15.52733 -15.32279 -14.49169 -14.28264 -14.15450 -13.93350 -13.63321 -13.51865 -12.63567 -12.52412 -12.29370 -11.88056 -11.78294 -11.57313 -11.06919 -10.90187 -10.75957 -10.72994 -10.62125 -9.96692 -9.88970 -9.40908 -9.14861 -8.84238 -8.38386 -6.03152 -4.06477 2.40928 3.09203 3.25722 3.31353 3.36116 3.38104 3.56794 3.91561 4.07880 4.32055 4.43231 4.53150 4.83205 4.92145 4.94924 5.30207 5.32541 5.55027 5.64317 5.70861 5.74012 6.12472 6.42834 6.56495 6.79044 6.97206 7.61259 7.64019 7.73750 7.95248 8.29756 8.36860 8.99955 9.57765 11.08128 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.055400 B = 0.003194 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.295476 B = 8764.297803 C = 8899.189802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.116 3.884 12 N -0.719 5.719 13 C 0.538 3.462 14 O -0.544 6.544 15 C -0.170 4.170 16 H 0.129 0.871 17 C -0.127 4.127 18 C -0.195 4.195 19 H 0.146 0.854 20 C 0.293 3.707 21 F -0.201 7.201 22 F -0.205 7.205 23 H 0.262 0.738 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.400 0.600 31 H 0.116 0.884 32 H 0.111 0.889 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.736 -21.614 0.946 22.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.213 1.213 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.368 5.368 13 C 0.323 3.677 14 O -0.422 6.422 15 C -0.191 4.191 16 H 0.147 0.853 17 C -0.164 4.164 18 C -0.214 4.214 19 H 0.164 0.836 20 C 0.239 3.761 21 F -0.182 7.182 22 F -0.186 7.186 23 H 0.072 0.928 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.234 0.766 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.738 -21.609 0.918 22.654 hybrid contribution 1.001 1.145 -0.168 1.530 sum 7.739 -20.464 0.750 21.891 Atomic orbital electron populations 1.69956 1.06075 1.26837 1.50427 1.25034 0.94866 0.99323 0.95227 0.86630 0.79555 0.83033 0.78606 1.21257 1.20226 1.20226 1.21168 0.92972 0.90948 1.51141 0.92672 1.19026 0.93836 0.90832 0.97663 1.21897 0.99795 0.93264 1.00956 1.21687 0.91858 0.85044 1.02076 1.46115 1.11016 1.05628 1.74084 1.19447 0.88419 0.83458 0.76374 1.90699 1.16540 1.84769 1.50171 1.22284 1.01433 0.90565 1.04835 0.85333 1.23114 1.03241 0.99382 0.90700 1.23507 1.02260 0.93228 1.02421 0.83648 1.21281 0.80030 0.99159 0.75602 1.93017 1.96466 1.93543 1.35170 1.92965 1.42202 1.97074 1.86377 0.92843 0.96277 0.96257 0.92660 0.92656 0.91684 0.91646 0.76577 0.86537 0.87038 0.86154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 10 C -0.12 -2.35 5.27 -26.73 -0.14 -2.50 16 11 C 0.12 2.03 5.67 -4.04 -0.02 2.00 16 12 N -0.72 -10.20 5.56 -60.30 -0.33 -10.53 16 13 C 0.54 7.78 7.61 -10.99 -0.08 7.70 16 14 O -0.54 -9.92 16.26 5.56 0.09 -9.83 16 15 C -0.17 -1.77 5.83 -91.77 -0.54 -2.31 16 16 H 0.13 1.18 8.14 -51.93 -0.42 0.76 16 17 C -0.13 -1.04 9.63 -26.71 -0.26 -1.30 16 18 C -0.19 -1.74 5.67 -90.60 -0.51 -2.26 16 19 H 0.15 1.38 7.67 -51.93 -0.40 0.98 16 20 C 0.29 2.25 5.67 37.16 0.21 2.46 16 21 F -0.20 -2.10 17.29 2.25 0.04 -2.06 16 22 F -0.20 -1.78 15.91 2.25 0.04 -1.75 16 23 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.40 4.56 8.47 -40.82 -0.35 4.22 16 31 H 0.12 0.79 7.22 -51.93 -0.37 0.41 16 32 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 296.75 15.07 4.47 4.47 Total: -1.00 -32.68 296.75 -6.34 -39.02 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -4.46 Total: -0.55 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -1.89 Total: -9.13 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.40 Total: -36.62 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.07 Total: -3.81 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.68 -6.34 -39.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337810272.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.326 kcal (2) G-P(sol) polarization free energy of solvation -32.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds