Wall clock time and date at job start Mon Mar 30 2020 04:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39898 * 109.47146 * 2 1 4 4 F 1.39897 * 109.47188 * 239.99657 * 2 1 3 5 5 C 1.53005 * 109.47064 * 119.99554 * 2 1 3 6 6 C 1.50702 * 109.47229 * 180.02562 * 5 2 1 7 7 O 1.21290 * 119.99901 * 359.97438 * 6 5 2 8 8 N 1.34778 * 119.99939 * 180.02562 * 6 5 2 9 9 C 1.47016 * 125.65051 * 0.03690 * 8 6 5 10 10 C 1.54318 * 107.27321 * 181.02534 * 9 8 6 11 11 C 1.55158 * 102.93908 * 22.19512 * 10 9 8 12 12 H 1.09005 * 111.03828 * 82.59038 * 11 10 9 13 13 C 1.50706 * 111.00151 * 206.42024 * 11 10 9 14 14 H 1.08005 * 119.99758 * 112.19813 * 13 11 10 15 15 C 1.37871 * 120.00102 * 292.19698 * 13 11 10 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47057 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47389 * 300.00068 * 17 15 13 20 20 H 1.48504 * 109.47102 * 60.00417 * 17 15 13 21 21 C 1.47422 * 125.64241 * 180.02562 * 8 6 5 22 22 H 1.08993 * 109.46781 * 300.00270 * 1 2 3 23 23 H 1.08996 * 109.46691 * 60.00547 * 1 2 3 24 24 H 1.08997 * 109.46718 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46482 * 60.00308 * 5 2 1 26 26 H 1.08994 * 109.47243 * 300.00507 * 5 2 1 27 27 H 1.09001 * 109.88167 * 300.44540 * 9 8 6 28 28 H 1.09006 * 109.87896 * 61.45663 * 9 8 6 29 29 H 1.09000 * 110.72506 * 263.83198 * 10 9 8 30 30 H 1.09001 * 110.72284 * 140.55389 * 10 9 8 31 31 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 32 32 H 1.08999 * 110.37553 * 37.06944 * 21 8 6 33 33 H 1.09005 * 110.36838 * 274.73618 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0400 -0.7212 1.2493 6 6 3.5470 -0.7207 1.2497 7 8 4.1535 -0.1956 0.3400 8 7 4.2209 -1.3045 2.2604 9 6 3.6147 -1.9757 3.4195 10 6 4.7680 -2.4651 4.3204 11 6 5.9477 -1.5475 3.9038 12 1 5.8983 -0.5883 4.4192 13 6 7.2716 -2.2234 4.1525 14 1 7.8934 -2.5160 3.3194 15 6 7.6889 -2.4680 5.4436 16 7 6.9315 -2.1121 6.4581 17 14 9.3295 -3.3064 5.7517 18 1 9.5440 -3.4521 7.2139 19 1 9.3272 -4.6480 5.1151 20 1 10.4220 -2.4849 5.1712 21 6 5.6880 -1.3761 2.3865 22 1 -0.3632 0.5139 0.8899 23 1 -0.3632 0.5137 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 1.6767 -1.7489 1.2493 26 1 1.6766 -0.2074 2.1392 27 1 2.9878 -1.2732 3.9686 28 1 3.0165 -2.8237 3.0857 29 1 5.0010 -3.5100 4.1152 30 1 4.5221 -2.3232 5.3728 31 1 6.0794 -1.6771 6.2981 32 1 6.1453 -0.4551 2.0250 33 1 6.0746 -2.2341 1.8364 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397620019.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:32 Heat of formation + Delta-G solvation = -171.503632 kcal Electronic energy + Delta-G solvation = -18414.069833 eV Core-core repulsion = 15109.004817 eV Total energy + Delta-G solvation = -3305.065016 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.112 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.88536 -47.91033 -41.04726 -38.62833 -35.31991 -34.24145 -32.06167 -30.35035 -29.31197 -26.40359 -24.40091 -22.84985 -21.87940 -20.42787 -19.12095 -18.63876 -18.27562 -17.71914 -17.11362 -16.80048 -16.16104 -15.68971 -15.54581 -14.85480 -14.53326 -14.30445 -14.25734 -13.97980 -13.86008 -13.62863 -13.44054 -13.23657 -13.06717 -13.04314 -12.77398 -12.49044 -12.00182 -11.94098 -11.80515 -11.56247 -11.06929 -10.64482 -10.50312 -9.71696 -8.61474 -6.34748 1.46993 1.56641 1.62594 1.82117 1.86271 2.57791 2.79272 3.10371 3.18057 3.29713 3.46379 3.83896 3.87414 4.15257 4.16523 4.31602 4.35300 4.35399 4.57940 4.63268 4.67294 4.83593 4.86445 5.05005 5.07026 5.16079 5.27962 5.53405 6.03181 6.17616 6.47538 6.63324 6.98919 7.43386 8.78948 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.057369 B = 0.004782 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.951560 B = 5854.343251 C = 6058.377549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.286 3.714 3 F -0.218 7.218 4 F -0.217 7.217 5 C -0.175 4.175 6 C 0.510 3.490 7 O -0.587 6.587 8 N -0.615 5.615 9 C 0.104 3.896 10 C -0.119 4.119 11 C 0.021 3.979 12 H 0.007 0.993 13 C -0.612 4.612 14 H 0.044 0.956 15 C -0.019 4.019 16 N -0.930 5.930 17 Si 1.111 2.889 18 H -0.283 1.283 19 H -0.271 1.271 20 H -0.278 1.278 21 C 0.125 3.875 22 H 0.113 0.887 23 H 0.085 0.915 24 H 0.115 0.885 25 H 0.158 0.842 26 H 0.154 0.846 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.264 0.736 32 H 0.042 0.958 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.304 -0.189 -6.833 17.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.250 3.750 3 F -0.199 7.199 4 F -0.198 7.198 5 C -0.214 4.214 6 C 0.300 3.700 7 O -0.468 6.468 8 N -0.348 5.348 9 C -0.018 4.018 10 C -0.157 4.157 11 C 0.002 3.998 12 H 0.025 0.975 13 C -0.650 4.650 14 H 0.062 0.938 15 C -0.219 4.219 16 N -0.567 5.567 17 Si 0.934 3.066 18 H -0.208 1.208 19 H -0.196 1.196 20 H -0.204 1.204 21 C 0.002 3.998 22 H 0.132 0.868 23 H 0.104 0.896 24 H 0.133 0.867 25 H 0.176 0.824 26 H 0.172 0.828 27 H 0.108 0.892 28 H 0.116 0.884 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.026 -0.404 -6.204 16.262 hybrid contribution -0.325 0.858 -1.318 1.606 sum -15.351 0.453 -7.522 17.101 Atomic orbital electron populations 1.22803 0.86763 1.07536 1.06783 1.21451 0.95906 0.74803 0.82822 1.92989 1.91259 1.38836 1.96838 1.92987 1.91249 1.81141 1.54410 1.22980 0.90383 1.07498 1.00540 1.20862 0.91216 0.77398 0.80483 1.90734 1.71594 1.47285 1.37160 1.48759 1.07680 1.55397 1.22972 1.22305 0.96052 0.97651 0.85758 1.22654 0.94738 0.99753 0.98582 1.19915 0.95061 0.94652 0.90202 0.97491 1.22124 1.04830 1.43072 0.94947 0.93782 1.27058 1.06495 0.96228 0.92115 1.70919 1.13229 1.38990 1.33556 0.82981 0.71384 0.76154 0.76109 1.20788 1.19590 1.20358 1.22093 0.80005 0.99320 0.98409 0.86826 0.89645 0.86653 0.82413 0.82785 0.89214 0.88362 0.92285 0.91608 0.92515 0.93952 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 9.38 71.98 0.68 -1.38 16 2 C 0.29 6.69 1.85 30.60 0.06 6.75 16 3 F -0.22 -6.76 16.14 44.97 0.73 -6.03 16 4 F -0.22 -6.59 16.15 44.97 0.73 -5.87 16 5 C -0.17 -3.63 4.49 29.85 0.13 -3.49 16 6 C 0.51 17.87 7.62 87.66 0.67 18.53 16 7 O -0.59 -26.47 15.09 -3.06 -0.05 -26.52 16 8 N -0.62 -22.27 3.33 -811.84 -2.70 -24.97 16 9 C 0.10 3.03 6.49 86.73 0.56 3.59 16 10 C -0.12 -4.73 5.82 31.78 0.19 -4.54 16 11 C 0.02 1.02 2.48 -10.15 -0.03 0.99 16 12 H 0.01 0.37 7.89 -2.38 -0.02 0.35 16 13 C -0.61 -33.31 8.49 25.60 0.22 -33.09 16 14 H 0.04 2.42 7.77 -2.91 -0.02 2.40 16 15 C -0.02 -1.05 5.37 84.65 0.45 -0.60 16 16 N -0.93 -53.23 13.51 21.45 0.29 -52.94 16 17 Si 1.11 48.55 29.90 68.60 2.05 50.60 16 18 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 20 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 21 C 0.12 5.56 6.35 86.85 0.55 6.11 16 22 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 23 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.16 2.09 8.14 -2.38 -0.02 2.07 16 26 H 0.15 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 29 H 0.06 2.44 8.03 -2.39 -0.02 2.42 16 30 H 0.07 2.69 6.86 -2.39 -0.02 2.67 16 31 H 0.26 14.89 5.69 -92.71 -0.53 14.36 16 32 H 0.04 2.02 8.04 -2.39 -0.02 2.00 16 33 H 0.05 2.43 8.01 -2.38 -0.02 2.41 16 Total: -1.00 -74.04 283.07 5.87 -68.17 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: 1.34 Total: 4.69 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 3.48 Total: -7.14 kcal Atomic # 7 Polarization: -75.50 SS G_CDS: -2.41 Total: -77.91 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.05 Total: -26.52 kcal Atomic # 9 Polarization: -13.35 SS G_CDS: 1.45 Total: -11.90 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 2.05 Total: 50.60 kcal Total: -74.04 5.87 -68.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397620019.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.336 kcal (2) G-P(sol) polarization free energy of solvation -74.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds