Wall clock time and date at job start Mon Mar 30 2020 03:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00180 * 2 1 4 4 H 1.48498 * 109.47330 * 269.99939 * 3 2 1 5 5 H 1.48504 * 109.46997 * 29.99821 * 3 2 1 6 6 H 1.48505 * 109.47244 * 149.99397 * 3 2 1 7 7 C 1.37882 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99939 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00112 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47076 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46884 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.46993 * 180.02562 * 11 10 9 13 13 O 1.21278 * 120.00183 * 0.02562 * 12 11 10 14 14 N 1.34783 * 119.99755 * 179.97438 * 12 11 10 15 15 C 1.46499 * 119.99531 * 180.02562 * 14 12 11 16 16 C 1.53781 * 113.61225 * 155.00207 * 15 14 12 17 17 C 1.53786 * 87.17350 * 139.93836 * 16 15 14 18 18 F 1.39898 * 113.61558 * 89.15642 * 17 16 15 19 19 F 1.39897 * 113.61259 * 220.06188 * 17 16 15 20 20 C 1.53782 * 113.61191 * 252.49880 * 15 14 12 21 21 H 0.96999 * 120.00058 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47136 * 59.99520 * 9 7 2 23 23 H 1.09004 * 109.46737 * 300.00191 * 9 7 2 24 24 H 1.09001 * 109.46999 * 60.00441 * 10 9 7 25 25 H 1.08993 * 109.47296 * 299.99963 * 10 9 7 26 26 H 1.08994 * 109.47522 * 59.99846 * 11 10 9 27 27 H 1.09007 * 109.47099 * 299.99799 * 11 10 9 28 28 H 0.96997 * 119.99692 * 0.02562 * 14 12 11 29 29 H 1.08996 * 112.85385 * 23.80181 * 15 14 12 30 30 H 1.09002 * 113.61445 * 254.52836 * 16 15 14 31 31 H 1.09002 * 113.61408 * 25.34566 * 16 15 14 32 32 H 1.08997 * 113.61668 * 334.56642 * 20 15 14 33 33 H 1.08998 * 113.61674 * 105.39151 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 6 2.4595 -6.1326 0.0005 13 8 3.6519 -5.9110 0.0019 14 7 2.0102 -7.4033 0.0006 15 6 2.9622 -8.5168 0.0018 16 6 2.3914 -9.8146 0.5973 17 6 3.1272 -10.5639 -0.5262 18 9 4.4352 -10.9307 -0.1919 19 9 2.3888 -11.6185 -1.0735 20 6 3.0415 -9.2608 -1.3417 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 2.8719 -3.6043 0.8906 25 1 2.8719 -3.6044 -0.8894 26 1 0.8538 -5.0446 -0.8902 27 1 0.8532 -5.0451 0.8897 28 1 1.0565 -7.5804 -0.0001 29 1 3.9355 -8.2412 0.4079 30 1 2.7699 -10.0412 1.5940 31 1 1.3057 -9.8850 0.5308 32 1 2.1337 -9.1805 -1.9396 33 1 3.9442 -9.0392 -1.9109 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594347108.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:33 Heat of formation + Delta-G solvation = -137.339821 kcal Electronic energy + Delta-G solvation = -17311.991212 eV Core-core repulsion = 14008.407650 eV Total energy + Delta-G solvation = -3303.583562 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.112 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.14198 -47.48506 -39.95801 -37.84270 -34.21458 -33.24854 -31.97118 -28.03808 -26.68886 -24.97940 -23.40921 -20.83680 -20.73668 -19.77137 -18.07116 -17.07699 -16.91849 -16.57320 -16.17659 -15.56690 -15.33023 -14.55765 -14.40928 -14.34809 -13.76966 -13.62083 -13.48672 -13.01756 -12.57583 -12.28984 -12.20705 -11.85976 -11.64644 -11.37007 -10.85541 -10.81994 -10.63820 -10.54663 -9.79125 -9.70937 -9.30584 -9.22919 -9.04257 -8.33279 -5.99036 -4.00487 2.74425 2.89642 3.25381 3.34138 3.38625 3.40050 3.44857 3.82941 4.12436 4.13892 4.48364 4.88475 4.97292 4.98329 5.17937 5.20862 5.35256 5.37158 5.63655 5.66185 5.72465 6.20329 6.29038 6.69095 6.89569 7.13273 7.43797 7.69047 7.81376 8.01462 8.31510 8.45361 9.06638 9.63622 11.12456 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.072319 B = 0.003236 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.082699 B = 8651.049671 C = 8858.283324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.096 4.096 11 C -0.138 4.138 12 C 0.515 3.485 13 O -0.533 6.533 14 N -0.728 5.728 15 C 0.133 3.867 16 C -0.174 4.174 17 C 0.257 3.743 18 F -0.177 7.177 19 F -0.189 7.189 20 C -0.181 4.181 21 H 0.260 0.740 22 H 0.016 0.984 23 H 0.016 0.984 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.403 0.597 29 H 0.128 0.872 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.419 -21.543 -0.298 21.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.134 4.134 11 C -0.178 4.178 12 C 0.304 3.696 13 O -0.408 6.408 14 N -0.381 5.381 15 C 0.026 3.974 16 C -0.213 4.213 17 C 0.220 3.780 18 F -0.158 7.158 19 F -0.170 7.170 20 C -0.221 4.221 21 H 0.069 0.931 22 H 0.034 0.966 23 H 0.034 0.966 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.238 0.762 29 H 0.146 0.854 30 H 0.120 0.880 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.163 -21.262 -0.289 21.374 hybrid contribution -0.029 0.512 -0.080 0.519 sum 2.134 -20.750 -0.369 20.863 Atomic orbital electron populations 1.69961 1.06040 1.26564 1.51182 1.25023 0.94863 0.99273 0.95364 0.86587 0.79901 0.83385 0.78112 1.20671 1.21265 1.19822 1.21272 0.93202 0.91011 1.50195 0.92565 1.19134 0.93961 0.91462 0.97145 1.21458 0.98675 0.91505 1.01749 1.21867 0.98100 0.93933 1.03926 1.21391 0.90518 0.83659 0.74075 1.90689 1.17362 1.84590 1.48121 1.45998 1.09527 1.05313 1.77232 1.22066 0.95835 0.84909 0.94544 1.24488 1.02908 0.94361 0.99549 1.21751 0.76385 0.83249 0.96590 1.93038 1.36874 1.92927 1.92960 1.93018 1.76005 1.61151 1.86782 1.24687 1.06355 0.91460 0.99550 0.93057 0.96599 0.96574 0.92649 0.92667 0.89180 0.89169 0.76194 0.85432 0.88049 0.86472 0.86620 0.88244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 10 C -0.10 -2.01 4.44 -26.73 -0.12 -2.13 16 11 C -0.14 -2.13 5.70 -27.88 -0.16 -2.29 16 12 C 0.52 7.55 7.83 -10.98 -0.09 7.47 16 13 O -0.53 -10.03 15.58 5.56 0.09 -9.94 16 14 N -0.73 -7.24 5.35 -53.02 -0.28 -7.52 16 15 C 0.13 1.22 4.22 -67.12 -0.28 0.93 16 16 C -0.17 -1.18 7.61 -25.92 -0.20 -1.37 16 17 C 0.26 2.22 3.28 -25.82 -0.08 2.13 16 18 F -0.18 -1.84 17.39 2.25 0.04 -1.80 16 19 F -0.19 -1.83 17.41 2.25 0.04 -1.80 16 20 C -0.18 -1.49 7.67 -25.82 -0.20 -1.69 16 21 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 22 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 23 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 25 H 0.05 1.20 8.10 -51.93 -0.42 0.78 16 26 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.40 2.76 8.73 -40.82 -0.36 2.40 16 29 H 0.13 1.41 7.46 -51.93 -0.39 1.02 16 30 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.12 0.57 8.12 -51.93 -0.42 0.15 16 32 H 0.12 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 293.73 15.07 4.43 4.43 Total: -1.00 -33.13 293.73 -6.16 -39.29 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -4.51 Total: -3.12 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -1.68 Total: -10.25 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: 0.45 Total: -33.67 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.08 Total: -3.60 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.13 -6.16 -39.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594347108.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.045 kcal (2) G-P(sol) polarization free energy of solvation -33.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds