Wall clock time and date at job start Mon Mar 30 2020 03:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 115.55302 * 2 1 4 4 N 1.46498 * 109.47462 * 294.92503 * 3 2 1 5 5 C 1.34781 * 120.00300 * 174.53666 * 4 3 2 6 6 O 1.21284 * 119.99559 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.99833 * 179.97438 * 5 4 3 8 8 C 1.53004 * 109.46916 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47223 * 180.02562 * 8 7 5 10 10 H 1.08001 * 119.99804 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99643 * 180.27958 * 9 8 7 12 12 N 1.31508 * 120.00357 * 359.72687 * 11 9 8 13 13 Si 1.86803 * 119.99311 * 179.72639 * 11 9 8 14 14 H 1.48499 * 109.47217 * 90.00308 * 13 11 9 15 15 H 1.48506 * 109.46521 * 209.99739 * 13 11 9 16 16 H 1.48494 * 109.47561 * 329.99676 * 13 11 9 17 17 C 1.53006 * 117.49723 * 214.33472 * 2 1 3 18 18 C 1.53007 * 117.50102 * 145.67658 * 2 1 3 19 19 F 1.39899 * 117.49709 * 215.00470 * 18 2 1 20 20 F 1.39902 * 117.49497 * 0.02562 * 18 2 1 21 21 H 1.08998 * 109.46805 * 61.23399 * 1 2 3 22 22 H 1.09000 * 109.47123 * 181.23496 * 1 2 3 23 23 H 1.09003 * 109.46662 * 301.23807 * 1 2 3 24 24 H 1.08997 * 109.47738 * 174.91704 * 3 2 1 25 25 H 1.09006 * 109.46913 * 54.92054 * 3 2 1 26 26 H 0.97002 * 119.99829 * 354.53676 * 4 3 2 27 27 H 1.09000 * 109.47266 * 60.00502 * 7 5 4 28 28 H 1.08995 * 109.47397 * 299.99924 * 7 5 4 29 29 H 1.09000 * 109.46462 * 60.00353 * 8 7 5 30 30 H 1.08999 * 109.47395 * 300.00837 * 8 7 5 31 31 H 0.97007 * 120.00166 * 180.02562 * 12 11 9 32 32 H 1.08999 * 117.49695 * 359.97438 * 17 2 1 33 33 H 1.08998 * 117.49623 * 144.97375 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1900 1.3803 0.0000 4 7 1.8755 2.0720 -1.2525 5 6 2.2597 3.3516 -1.4306 6 8 2.8654 3.9305 -0.5537 7 6 1.9367 4.0628 -2.7193 8 6 2.4801 5.4920 -2.6631 9 6 2.1566 6.2035 -3.9516 10 1 1.6169 5.6881 -4.7323 11 6 2.5541 7.5108 -4.1357 12 7 3.2109 8.1386 -3.1849 13 14 2.1597 8.3903 -5.7358 14 1 0.8439 9.0682 -5.6168 15 1 3.2124 9.3989 -6.0187 16 1 2.1095 7.4031 -6.8440 17 6 2.2364 -1.1207 -0.7655 18 6 2.2365 -1.1208 0.7653 19 9 3.4364 -0.8050 1.4116 20 9 1.4340 -2.0676 1.4110 21 1 -0.3633 0.4945 -0.9008 22 1 -0.3633 -1.0274 0.0221 23 1 -0.3633 0.5330 0.8787 24 1 3.2702 1.2667 0.0910 25 1 1.8138 1.9629 0.8410 26 1 1.3907 1.6091 -1.9537 27 1 0.8559 4.0908 -2.8579 28 1 2.3962 3.5315 -3.5527 29 1 3.5609 5.4644 -2.5243 30 1 2.0203 6.0231 -1.8297 31 1 3.4903 9.0585 -3.3143 32 1 1.6112 -1.8582 -1.2687 33 1 3.1711 -0.8745 -1.2693 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598214766.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:39 Heat of formation + Delta-G solvation = -124.752689 kcal Electronic energy + Delta-G solvation = -17557.093182 eV Core-core repulsion = 14254.055439 eV Total energy + Delta-G solvation = -3303.037743 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.112 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.95204 -47.62284 -39.42210 -37.75671 -33.79080 -33.45440 -31.02041 -29.05022 -27.24962 -25.15156 -22.94600 -21.63226 -20.15048 -19.67777 -18.00889 -17.16318 -16.51827 -16.16148 -15.62696 -15.53302 -15.17354 -14.41994 -14.28824 -14.18812 -13.96783 -13.80689 -13.38528 -13.06726 -13.06153 -12.60181 -12.19164 -12.05661 -11.68194 -11.17626 -10.93899 -10.84975 -10.61129 -10.21308 -9.97217 -9.68369 -9.20313 -9.03497 -8.87015 -8.32731 -5.96685 -4.01321 2.51273 2.72307 3.21126 3.32869 3.38915 3.41326 3.59377 3.78732 3.94680 4.31322 4.38629 4.47209 5.00003 5.11107 5.30739 5.32558 5.38303 5.41997 5.52476 5.54625 5.75898 5.82948 6.20319 6.21606 6.60380 6.87121 7.73384 7.81890 7.85121 8.06355 8.37476 8.73167 9.07258 9.62351 11.14246 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.057921 B = 0.003677 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.299055 B = 7612.231418 C = 7830.892009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.136 4.136 3 C 0.153 3.847 4 N -0.740 5.740 5 C 0.510 3.490 6 O -0.532 6.532 7 C -0.129 4.129 8 C 0.036 3.964 9 C -0.528 4.528 10 H 0.056 0.944 11 C 0.058 3.942 12 N -0.889 5.889 13 Si 0.893 3.107 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.274 1.274 17 C -0.166 4.166 18 C 0.206 3.794 19 F -0.157 7.157 20 F -0.159 7.159 21 H 0.077 0.923 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.398 0.602 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.024 0.976 30 H 0.024 0.976 31 H 0.261 0.739 32 H 0.125 0.875 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.328 -20.596 4.489 21.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.138 4.138 3 C 0.029 3.971 4 N -0.395 5.395 5 C 0.299 3.701 6 O -0.407 6.407 7 C -0.169 4.169 8 C -0.002 4.002 9 C -0.566 4.566 10 H 0.074 0.926 11 C -0.144 4.144 12 N -0.528 5.528 13 Si 0.721 3.279 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.204 4.204 18 C 0.168 3.832 19 F -0.137 7.137 20 F -0.139 7.139 21 H 0.096 0.904 22 H 0.086 0.914 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.098 0.902 26 H 0.232 0.768 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.143 0.857 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.769 -19.993 5.233 21.209 hybrid contribution -0.309 0.091 -0.894 0.950 sum -5.078 -19.901 4.339 20.992 Atomic orbital electron populations 1.21360 0.89423 1.03102 1.03790 1.23149 0.97656 0.92319 1.00668 1.20660 0.99415 0.88148 0.88899 1.46093 1.61312 1.14044 1.18073 1.21611 0.77716 0.80249 0.90565 1.90688 1.39608 1.65749 1.44646 1.21864 1.02355 1.00450 0.92184 1.18910 0.97079 0.87008 0.97157 1.21218 1.36656 0.97441 1.01299 0.92594 1.25025 0.95141 0.97600 0.96605 1.69997 1.38375 1.11697 1.32732 0.86590 0.78003 0.79524 0.83812 1.20672 1.21222 1.19891 1.24521 1.04571 1.00461 0.90833 1.20046 0.80829 0.93423 0.88885 1.93047 1.44596 1.92574 1.83484 1.93016 1.72257 1.65050 1.83612 0.90369 0.91374 0.90874 0.90985 0.90221 0.76781 0.90174 0.90179 0.95792 0.95803 0.92931 0.85680 0.85588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 9.41 37.16 0.35 -0.53 16 2 C -0.14 -1.20 2.13 -154.50 -0.33 -1.53 16 3 C 0.15 1.84 5.35 -4.04 -0.02 1.82 16 4 N -0.74 -9.62 5.47 -60.30 -0.33 -9.95 16 5 C 0.51 9.48 7.83 -10.99 -0.09 9.40 16 6 O -0.53 -12.42 15.97 5.55 0.09 -12.33 16 7 C -0.13 -2.53 5.64 -27.88 -0.16 -2.68 16 8 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 9 C -0.53 -14.85 9.11 -34.44 -0.31 -15.16 16 10 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -27.35 13.29 55.43 0.74 -26.62 16 13 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 C -0.17 -1.18 9.94 -26.69 -0.27 -1.45 16 18 C 0.21 2.00 5.14 -26.69 -0.14 1.86 16 19 F -0.16 -1.84 16.77 2.25 0.04 -1.81 16 20 F -0.16 -1.64 16.85 2.25 0.04 -1.60 16 21 H 0.08 0.51 7.88 -51.93 -0.41 0.10 16 22 H 0.07 0.43 7.70 -51.93 -0.40 0.03 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.95 7.58 -51.93 -0.39 0.55 16 25 H 0.08 1.06 8.13 -51.93 -0.42 0.64 16 26 H 0.40 3.89 8.21 -40.82 -0.33 3.55 16 27 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 30 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 32 H 0.13 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.13 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 295.93 15.07 4.46 4.46 Total: -1.00 -33.80 295.93 -5.62 -39.43 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -4.46 Total: -2.22 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -1.18 Total: -5.85 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.41 Total: -36.57 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.09 Total: -12.33 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.08 Total: -3.41 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.80 -5.62 -39.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598214766.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.327 kcal (2) G-P(sol) polarization free energy of solvation -33.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds