Wall clock time and date at job start Mon Mar 30 2020 03:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 115.55302 * 2 1 4 4 N 1.46498 * 109.47462 * 294.92503 * 3 2 1 5 5 C 1.34781 * 120.00300 * 174.53666 * 4 3 2 6 6 O 1.21284 * 119.99559 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.99833 * 179.97438 * 5 4 3 8 8 C 1.53004 * 109.46916 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47223 * 180.02562 * 8 7 5 10 10 H 1.08001 * 119.99804 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99643 * 180.27958 * 9 8 7 12 12 N 1.31508 * 120.00357 * 359.72687 * 11 9 8 13 13 Si 1.86803 * 119.99311 * 179.72639 * 11 9 8 14 14 H 1.48499 * 109.47217 * 90.00308 * 13 11 9 15 15 H 1.48506 * 109.46521 * 209.99739 * 13 11 9 16 16 H 1.48494 * 109.47561 * 329.99676 * 13 11 9 17 17 C 1.53006 * 117.49723 * 214.33472 * 2 1 3 18 18 C 1.53007 * 117.50102 * 145.67658 * 2 1 3 19 19 F 1.39899 * 117.49709 * 215.00470 * 18 2 1 20 20 F 1.39902 * 117.49497 * 0.02562 * 18 2 1 21 21 H 1.08998 * 109.46805 * 61.23399 * 1 2 3 22 22 H 1.09000 * 109.47123 * 181.23496 * 1 2 3 23 23 H 1.09003 * 109.46662 * 301.23807 * 1 2 3 24 24 H 1.08997 * 109.47738 * 174.91704 * 3 2 1 25 25 H 1.09006 * 109.46913 * 54.92054 * 3 2 1 26 26 H 0.97002 * 119.99829 * 354.53676 * 4 3 2 27 27 H 1.09000 * 109.47266 * 60.00502 * 7 5 4 28 28 H 1.08995 * 109.47397 * 299.99924 * 7 5 4 29 29 H 1.09000 * 109.46462 * 60.00353 * 8 7 5 30 30 H 1.08999 * 109.47395 * 300.00837 * 8 7 5 31 31 H 0.97007 * 120.00166 * 180.02562 * 12 11 9 32 32 H 1.08999 * 117.49695 * 359.97438 * 17 2 1 33 33 H 1.08998 * 117.49623 * 144.97375 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1900 1.3803 0.0000 4 7 1.8755 2.0720 -1.2525 5 6 2.2597 3.3516 -1.4306 6 8 2.8654 3.9305 -0.5537 7 6 1.9367 4.0628 -2.7193 8 6 2.4801 5.4920 -2.6631 9 6 2.1566 6.2035 -3.9516 10 1 1.6169 5.6881 -4.7323 11 6 2.5541 7.5108 -4.1357 12 7 3.2109 8.1386 -3.1849 13 14 2.1597 8.3903 -5.7358 14 1 0.8439 9.0682 -5.6168 15 1 3.2124 9.3989 -6.0187 16 1 2.1095 7.4031 -6.8440 17 6 2.2364 -1.1207 -0.7655 18 6 2.2365 -1.1208 0.7653 19 9 3.4364 -0.8050 1.4116 20 9 1.4340 -2.0676 1.4110 21 1 -0.3633 0.4945 -0.9008 22 1 -0.3633 -1.0274 0.0221 23 1 -0.3633 0.5330 0.8787 24 1 3.2702 1.2667 0.0910 25 1 1.8138 1.9629 0.8410 26 1 1.3907 1.6091 -1.9537 27 1 0.8559 4.0908 -2.8579 28 1 2.3962 3.5315 -3.5527 29 1 3.5609 5.4644 -2.5243 30 1 2.0203 6.0231 -1.8297 31 1 3.4903 9.0585 -3.3143 32 1 1.6112 -1.8582 -1.2687 33 1 3.1711 -0.8745 -1.2693 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598214766.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:39 Heat of formation + Delta-G solvation = -148.014848 kcal Electronic energy + Delta-G solvation = -17558.101905 eV Core-core repulsion = 14254.055439 eV Total energy + Delta-G solvation = -3304.046466 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.112 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.73356 -48.42197 -40.79572 -38.70764 -35.56484 -35.02049 -32.96488 -29.75877 -28.60780 -26.84114 -23.78226 -23.36062 -21.32299 -20.80407 -18.92980 -18.71505 -17.79939 -17.18025 -16.87579 -16.83579 -16.54500 -16.34881 -15.28033 -15.08303 -14.97000 -14.65031 -14.41373 -14.25462 -14.17512 -14.03973 -13.53720 -13.21441 -13.09954 -12.79284 -12.50878 -12.42608 -11.88971 -11.62154 -11.56500 -11.28790 -11.04744 -10.61900 -10.55330 -10.12819 -8.16201 -6.30227 1.44030 1.46684 1.57505 1.68173 1.71552 2.05113 2.41048 2.53233 3.11230 3.17157 3.19568 3.57923 3.63523 4.07222 4.26172 4.50546 4.56280 4.60257 4.61633 4.68728 4.78808 4.84493 4.87054 5.11417 5.22210 5.38955 5.53049 5.65826 5.87844 6.19438 6.60552 6.88885 7.34509 7.40409 8.96517 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.057921 B = 0.003677 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.299055 B = 7612.231418 C = 7830.892009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.134 4.134 3 C 0.153 3.847 4 N -0.709 5.709 5 C 0.512 3.488 6 O -0.591 6.591 7 C -0.117 4.117 8 C 0.039 3.961 9 C -0.542 4.542 10 H 0.078 0.922 11 C -0.008 4.008 12 N -0.939 5.939 13 Si 0.974 3.026 14 H -0.272 1.272 15 H -0.288 1.288 16 H -0.254 1.254 17 C -0.136 4.136 18 C 0.182 3.818 19 F -0.175 7.175 20 F -0.163 7.163 21 H 0.091 0.909 22 H 0.083 0.917 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.420 0.580 27 H 0.108 0.892 28 H 0.108 0.892 29 H -0.019 1.019 30 H -0.019 1.019 31 H 0.262 0.738 32 H 0.157 0.843 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.989 -22.516 2.051 23.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.136 4.136 3 C 0.029 3.971 4 N -0.364 5.364 5 C 0.301 3.699 6 O -0.470 6.470 7 C -0.157 4.157 8 C 0.001 3.999 9 C -0.580 4.580 10 H 0.096 0.904 11 C -0.205 4.205 12 N -0.579 5.579 13 Si 0.798 3.202 14 H -0.198 1.198 15 H -0.214 1.214 16 H -0.177 1.177 17 C -0.173 4.173 18 C 0.145 3.855 19 F -0.156 7.156 20 F -0.144 7.144 21 H 0.109 0.891 22 H 0.102 0.898 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.258 0.742 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.000 1.000 30 H 0.000 1.000 31 H 0.071 0.929 32 H 0.174 0.826 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.472 -21.991 2.767 23.090 hybrid contribution 0.216 0.640 -0.062 0.678 sum -6.256 -21.351 2.704 22.413 Atomic orbital electron populations 1.21413 0.87921 1.04184 1.04061 1.23017 0.98500 0.90416 1.01618 1.20625 0.99081 0.89829 0.87570 1.45675 1.59578 1.12140 1.18962 1.21397 0.77293 0.81672 0.89563 1.90678 1.42548 1.67525 1.46283 1.21629 1.03840 0.96436 0.93757 1.18717 0.94369 0.91302 0.95471 1.21734 1.36294 0.97925 1.02015 0.90370 1.26143 0.94806 0.98831 1.00732 1.70182 1.40000 1.12168 1.35570 0.85322 0.77733 0.78203 0.78981 1.19757 1.21393 1.17740 1.24693 1.04788 0.99197 0.88651 1.20434 0.80486 0.94140 0.90450 1.93006 1.45709 1.92800 1.84068 1.93002 1.72323 1.65119 1.83948 0.89062 0.89839 0.91752 0.92194 0.91909 0.74219 0.87374 0.87409 1.00023 1.00020 0.92922 0.82552 0.84943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 9.41 71.98 0.68 -0.73 16 2 C -0.13 -2.07 2.13 -52.18 -0.11 -2.18 16 3 C 0.15 3.57 5.35 86.38 0.46 4.04 16 4 N -0.71 -17.13 5.47 -463.06 -2.53 -19.66 16 5 C 0.51 18.91 7.83 87.66 0.69 19.60 16 6 O -0.59 -28.75 15.97 -3.04 -0.05 -28.80 16 7 C -0.12 -4.45 5.64 29.85 0.17 -4.28 16 8 C 0.04 2.15 4.26 29.85 0.13 2.27 16 9 C -0.54 -30.35 9.11 25.60 0.23 -30.12 16 10 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 11 C -0.01 -0.45 5.46 84.66 0.46 0.01 16 12 N -0.94 -59.51 13.29 21.45 0.28 -59.23 16 13 Si 0.97 43.79 29.54 68.60 2.03 45.81 16 14 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 15 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 16 H -0.25 -10.50 7.11 99.48 0.71 -9.79 16 17 C -0.14 -1.47 9.94 30.62 0.30 -1.17 16 18 C 0.18 3.25 5.14 30.62 0.16 3.41 16 19 F -0.18 -4.10 16.77 44.97 0.75 -3.35 16 20 F -0.16 -3.10 16.85 44.97 0.76 -2.34 16 21 H 0.09 0.84 7.88 -2.39 -0.02 0.83 16 22 H 0.08 0.77 7.70 -2.39 -0.02 0.75 16 23 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.06 1.58 7.58 -2.39 -0.02 1.56 16 25 H 0.06 1.71 8.13 -2.38 -0.02 1.69 16 26 H 0.42 6.64 8.21 -92.71 -0.76 5.88 16 27 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 28 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 29 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 16 30 H -0.02 -1.17 8.10 -2.39 -0.02 -1.18 16 31 H 0.26 15.57 8.31 -92.70 -0.77 14.80 16 32 H 0.16 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -77.57 295.93 4.77 -72.80 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: 0.36 Total: 3.92 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: 3.17 Total: -9.15 kcal Atomic # 7 Polarization: -76.64 SS G_CDS: -2.25 Total: -78.89 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -0.05 Total: -28.80 kcal Atomic # 9 Polarization: -7.21 SS G_CDS: 1.51 Total: -5.69 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -77.57 4.77 -72.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598214766.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.211 kcal (2) G-P(sol) polarization free energy of solvation -77.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds