Wall clock time and date at job start Mon Mar 30 2020 04:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46970 * 2 1 4 4 C 1.50700 * 109.47038 * 239.99601 * 2 1 3 5 5 H 1.07994 * 119.99687 * 245.62571 * 4 2 1 6 6 C 1.37874 * 119.99722 * 65.35018 * 4 2 1 7 7 N 1.31514 * 120.00464 * 355.48187 * 6 4 2 8 8 Si 1.86802 * 119.99717 * 175.48631 * 6 4 2 9 9 H 1.48498 * 109.47365 * 94.99687 * 8 6 4 10 10 H 1.48498 * 109.47025 * 214.99910 * 8 6 4 11 11 H 1.48496 * 109.47112 * 334.99528 * 8 6 4 12 12 N 1.46499 * 109.46888 * 119.99759 * 2 1 3 13 13 C 1.46501 * 120.00193 * 55.46802 * 12 2 1 14 14 C 1.39097 * 120.00163 * 235.46782 * 12 2 1 15 15 C 1.40878 * 119.58579 * 10.27863 * 14 12 2 16 16 C 1.35906 * 120.09503 * 179.97438 * 15 14 12 17 17 C 1.40802 * 119.13522 * 0.02562 * 16 15 14 18 18 N 1.32363 * 133.77524 * 179.97438 * 17 16 15 19 19 N 1.28753 * 109.23315 * 180.02562 * 18 17 16 20 20 C 1.31038 * 110.16399 * 0.02562 * 19 18 17 21 21 N 1.34989 * 107.68378 * 359.97438 * 20 19 18 22 22 N 1.31243 * 119.58870 * 190.01161 * 14 12 2 23 23 H 1.08998 * 109.47472 * 184.77385 * 1 2 3 24 24 H 1.09002 * 109.46969 * 304.77702 * 1 2 3 25 25 H 1.08997 * 109.46968 * 64.76920 * 1 2 3 26 26 H 0.96998 * 120.00503 * 180.02562 * 7 6 4 27 27 H 1.08997 * 109.47246 * 89.99658 * 13 12 2 28 28 H 1.08998 * 109.46892 * 210.00153 * 13 12 2 29 29 H 1.09005 * 109.46993 * 329.99753 * 13 12 2 30 30 H 1.08003 * 119.95006 * 0.02562 * 15 14 12 31 31 H 1.07996 * 120.43300 * 180.02562 * 16 15 14 32 32 H 1.07999 * 126.15239 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5762 -1.6385 -1.1338 6 6 1.7926 -0.1787 -2.4797 7 7 1.0504 0.8999 -2.6039 8 14 2.5219 -0.9903 -3.9959 9 1 1.5250 -1.9174 -4.5890 10 1 2.8817 0.0520 -4.9905 11 1 3.7388 -1.7505 -3.6134 12 7 2.0183 -0.6906 1.1962 13 6 1.5844 -2.0609 1.4794 14 6 2.8939 -0.0452 2.0632 15 6 3.1362 1.3339 1.9078 16 6 3.9894 1.9749 2.7494 17 6 4.6231 1.2429 3.7716 18 7 5.4827 1.5598 4.7269 19 7 5.7600 0.5070 5.4144 20 6 5.1040 -0.5253 4.9440 21 7 4.3668 -0.0999 3.8962 22 7 3.4800 -0.7275 3.0189 23 1 -0.3634 -1.0241 0.0855 24 1 -0.3633 0.5862 0.8441 25 1 -0.3633 0.4380 -0.9296 26 1 0.8814 1.2738 -3.4828 27 1 2.2749 -2.7642 1.0140 28 1 1.5724 -2.2227 2.5572 29 1 0.5829 -2.2152 1.0777 30 1 2.6426 1.8826 1.1194 31 1 4.1787 3.0320 2.6356 32 1 5.1457 -1.5346 5.3260 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702937907.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:10 Heat of formation + Delta-G solvation = 155.909834 kcal Electronic energy + Delta-G solvation = -17632.162459 eV Core-core repulsion = 14824.277094 eV Total energy + Delta-G solvation = -2807.885365 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.113 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.88435 -38.98995 -36.25795 -33.47921 -33.27319 -31.06969 -29.86083 -29.00490 -26.71115 -25.47165 -23.69507 -22.93668 -21.87389 -20.46045 -18.28580 -17.18203 -16.90823 -16.29264 -16.15866 -15.29505 -14.71344 -14.12817 -13.84864 -13.45320 -13.31538 -12.83744 -12.42313 -11.90598 -11.79978 -11.58637 -11.31890 -11.14091 -10.98864 -10.89600 -10.66638 -10.51051 -10.35435 -10.05260 -9.84085 -9.36565 -8.71853 -8.37551 -7.46465 -6.35710 -4.45573 0.74071 1.70403 2.11162 2.97058 3.11478 3.20355 3.23694 3.51889 3.56977 4.18425 4.30258 4.50176 4.86702 4.94199 4.98445 5.39827 5.67393 5.73598 5.86913 5.93859 5.97395 6.18866 6.21997 6.36310 6.43998 6.56843 6.67162 6.92095 7.26734 7.45000 7.67122 7.75000 7.99376 8.18150 8.60615 8.71615 9.23208 10.68460 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.033667 B = 0.005867 C = 0.005735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.473762 B = 4771.353303 C = 4881.370616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.263 3.737 3 H 0.058 0.942 4 C -0.534 4.534 5 H 0.063 0.937 6 C 0.069 3.931 7 N -0.886 5.886 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.273 1.273 12 N -0.554 5.554 13 C 0.099 3.901 14 C 0.418 3.582 15 C -0.153 4.153 16 C -0.015 4.015 17 C 0.123 3.877 18 N -0.269 5.269 19 N -0.280 5.280 20 C 0.165 3.835 21 N -0.265 5.265 22 N -0.371 5.371 23 H 0.037 0.963 24 H 0.017 0.983 25 H 0.096 0.904 26 H 0.267 0.733 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.166 0.834 31 H 0.163 0.837 32 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.102 -1.285 6.175 6.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.164 3.836 3 H 0.075 0.925 4 C -0.572 4.572 5 H 0.082 0.918 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.728 3.272 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.198 1.198 12 N -0.267 5.267 13 C -0.044 4.044 14 C 0.154 3.846 15 C -0.181 4.181 16 C -0.043 4.043 17 C -0.133 4.133 18 N -0.119 5.119 19 N -0.126 5.126 20 C -0.122 4.122 21 N -0.038 5.038 22 N -0.207 5.207 23 H 0.056 0.944 24 H 0.036 0.964 25 H 0.115 0.885 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.184 0.816 31 H 0.181 0.819 32 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 0.852 -1.363 7.127 7.306 hybrid contribution -0.465 -0.539 -1.983 2.107 sum 0.386 -1.902 5.143 5.497 Atomic orbital electron populations 1.22165 0.97340 0.99602 1.01833 1.19270 0.91568 0.93455 0.79319 0.92470 1.21309 1.36607 1.09348 0.89965 0.91834 1.24876 0.94558 0.94972 0.99046 1.69853 1.36618 1.21400 1.24520 0.86430 0.79586 0.79149 0.82059 1.20459 1.20851 1.19771 1.47378 1.42252 1.14571 1.22469 1.21543 1.00311 0.82402 1.00185 1.19417 0.87804 0.89482 0.87919 1.21768 1.00644 0.93904 1.01784 1.20266 0.93041 1.00847 0.90108 1.22505 1.03439 0.85157 1.02238 1.74839 1.13008 1.19766 1.04272 1.74455 1.20703 0.95295 1.22110 1.25896 0.95205 1.02340 0.88734 1.47204 1.28096 1.07399 1.21133 1.75731 1.15186 1.19394 1.10397 0.94400 0.96350 0.88543 0.92283 0.93065 0.92092 0.90647 0.81631 0.81915 0.76242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.07 37.16 0.34 -2.67 16 2 C 0.26 5.52 2.51 -69.08 -0.17 5.35 16 3 H 0.06 1.24 5.30 -51.93 -0.28 0.96 16 4 C -0.53 -12.69 8.40 -34.44 -0.29 -12.98 16 5 H 0.06 1.55 7.71 -52.49 -0.40 1.15 16 6 C 0.07 1.67 5.35 -17.82 -0.10 1.58 16 7 N -0.89 -21.98 11.53 55.43 0.64 -21.34 16 8 Si 0.90 19.34 29.54 -169.99 -5.02 14.32 16 9 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 12 N -0.55 -10.41 2.87 -175.12 -0.50 -10.91 16 13 C 0.10 1.63 9.78 59.85 0.59 2.21 16 14 C 0.42 7.67 7.44 -155.24 -1.15 6.51 16 15 C -0.15 -2.51 9.24 -39.42 -0.36 -2.87 16 16 C -0.02 -0.23 10.11 -39.45 -0.40 -0.63 16 17 C 0.12 2.19 7.99 -156.08 -1.25 0.94 16 18 N -0.27 -5.01 12.33 31.13 0.38 -4.63 16 19 N -0.28 -4.98 12.21 29.68 0.36 -4.62 16 20 C 0.16 2.60 13.16 -89.97 -1.18 1.41 16 21 N -0.27 -4.74 4.02 -13.40 -0.05 -4.79 16 22 N -0.37 -6.82 10.80 31.32 0.34 -6.48 16 23 H 0.04 0.71 6.32 -51.93 -0.33 0.38 16 24 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.10 2.15 6.24 -51.93 -0.32 1.83 16 26 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.93 7.55 -51.93 -0.39 0.53 16 29 H 0.07 1.18 6.11 -51.93 -0.32 0.86 16 30 H 0.17 2.57 5.80 -52.48 -0.30 2.26 16 31 H 0.16 1.89 8.06 -52.49 -0.42 1.47 16 32 H 0.22 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 273.39 15.07 4.12 4.12 Total: -1.00 -27.50 273.39 -6.89 -34.39 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -3.17 Total: 1.09 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -3.98 Total: -1.15 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: 1.17 Total: -52.77 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.32 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.50 -6.89 -34.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702937907.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.304 kcal (2) G-P(sol) polarization free energy of solvation -27.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds