Wall clock time and date at job start Mon Mar 30 2020 03:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99772 * 2 1 4 4 H 1.48496 * 109.46908 * 239.99862 * 3 2 1 5 5 H 1.48496 * 109.47029 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46801 * 120.00119 * 3 2 1 7 7 C 1.37872 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00426 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00250 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47174 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99525 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00463 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99675 * 179.72583 * 11 10 9 14 14 C 1.53004 * 109.47208 * 180.27843 * 13 11 10 15 15 H 1.09002 * 110.01441 * 54.29713 * 14 13 11 16 16 C 1.54260 * 110.02999 * 292.90964 * 14 13 11 17 17 C 1.54967 * 104.15845 * 217.13538 * 16 14 13 18 18 C 1.54889 * 102.77906 * 37.88720 * 17 16 14 19 19 C 1.53869 * 110.03198 * 175.68768 * 14 13 11 20 20 F 1.39902 * 110.03662 * 238.56692 * 19 14 13 21 21 F 1.39901 * 110.03726 * 359.95300 * 19 14 13 22 22 H 0.96998 * 120.00722 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.46956 * 59.99427 * 9 7 2 24 24 H 1.09001 * 109.46317 * 299.99874 * 9 7 2 25 25 H 0.97000 * 120.00580 * 0.02562 * 10 9 7 26 26 H 1.09009 * 109.47352 * 300.27556 * 13 11 10 27 27 H 1.08998 * 109.47585 * 60.27844 * 13 11 10 28 28 H 1.09004 * 110.49005 * 335.77861 * 16 14 13 29 29 H 1.08997 * 110.49319 * 98.42834 * 16 14 13 30 30 H 1.09001 * 110.71942 * 279.57488 * 17 16 14 31 31 H 1.09001 * 110.92443 * 156.29683 * 17 16 14 32 32 H 1.08998 * 110.48811 * 203.40581 * 18 17 16 33 33 H 1.08996 * 110.48782 * 80.76027 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5616 -5.1050 0.0011 13 6 2.7333 -6.0287 -0.0052 14 6 1.9683 -7.3538 -0.0102 15 1 1.2632 -7.3743 -0.8412 16 6 1.2171 -7.5353 1.3248 17 6 1.3318 -9.0520 1.6212 18 6 2.7670 -9.3867 1.1444 19 6 2.9531 -8.5304 -0.1253 20 9 2.6609 -9.2906 -1.2629 21 9 4.2660 -8.0518 -0.1935 22 1 -0.4851 0.8400 0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6242 -2.5567 0.8904 25 1 3.1569 -3.4354 0.0009 26 1 3.3589 -5.9670 -0.8957 27 1 3.3610 -5.9750 0.8843 28 1 1.6959 -6.9554 2.1139 29 1 0.1721 -7.2448 1.2172 30 1 0.5938 -9.6137 1.0485 31 1 1.2231 -9.2496 2.6876 32 1 2.8522 -10.4467 0.9056 33 1 3.4965 -9.1060 1.9041 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713934699.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:09 Heat of formation + Delta-G solvation = -164.248401 kcal Electronic energy + Delta-G solvation = -18109.753383 eV Core-core repulsion = 14805.002977 eV Total energy + Delta-G solvation = -3304.750406 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.112 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.97263 -47.02474 -39.18480 -37.15430 -34.19227 -32.38801 -31.66391 -27.97292 -27.58082 -25.54055 -22.52182 -21.37879 -20.44424 -19.55239 -17.92566 -16.98093 -16.70516 -16.07010 -15.27655 -15.23890 -14.93565 -14.49210 -14.31949 -14.15940 -13.68963 -13.35808 -13.26064 -12.73131 -12.46946 -12.01400 -11.90643 -11.74432 -11.57817 -11.24967 -11.03205 -10.90074 -10.81664 -10.76581 -10.62619 -10.31798 -9.42343 -9.05923 -8.74271 -7.89932 -6.17620 -4.24754 3.24845 3.29682 3.31124 3.34542 3.60022 3.80717 4.03053 4.18626 4.29827 4.46005 4.89776 4.97611 5.06939 5.16860 5.18481 5.26888 5.34037 5.49670 5.61414 5.68841 5.83108 5.85350 5.95132 6.19457 6.27517 7.28638 7.41759 7.50086 7.65018 7.95900 8.60787 8.76071 9.07659 9.42007 10.92549 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.047426 B = 0.004376 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.257328 B = 6397.382759 C = 6661.337445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.250 3.750 10 N -0.712 5.712 11 C 0.500 3.500 12 O -0.555 6.555 13 C -0.135 4.135 14 C -0.112 4.112 15 H 0.108 0.892 16 C -0.110 4.110 17 C -0.125 4.125 18 C -0.160 4.160 19 C 0.281 3.719 20 F -0.200 7.200 21 F -0.199 7.199 22 H 0.266 0.734 23 H 0.026 0.974 24 H 0.027 0.973 25 H 0.391 0.609 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.589 -16.968 2.774 18.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.129 3.871 10 N -0.360 5.360 11 C 0.284 3.716 12 O -0.435 6.435 13 C -0.176 4.176 14 C -0.131 4.131 15 H 0.126 0.874 16 C -0.147 4.147 17 C -0.163 4.163 18 C -0.198 4.198 19 C 0.245 3.755 20 F -0.181 7.181 21 F -0.180 7.180 22 H 0.076 0.924 23 H 0.044 0.956 24 H 0.045 0.955 25 H 0.224 0.776 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.092 0.908 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.583 -16.962 2.734 18.065 hybrid contribution 1.115 1.040 -0.243 1.544 sum 6.698 -15.922 2.491 17.452 Atomic orbital electron populations 1.69960 1.06119 1.27437 1.48827 1.24946 0.94908 0.99445 0.94653 0.86471 0.79421 0.82296 0.78712 1.20057 1.21052 1.20051 1.21200 0.93251 0.90496 1.53350 0.91943 1.19101 0.88311 0.81984 0.97714 1.46468 1.11186 1.06172 1.72188 1.20305 0.89360 0.84364 0.77554 1.90646 1.16816 1.84906 1.51096 1.21710 0.98440 0.92579 1.04842 1.22494 0.96490 0.91595 1.02529 0.87418 1.22402 1.02536 0.94959 0.94837 1.22542 0.94730 0.96995 1.02000 1.23344 1.00366 1.00508 0.95579 1.21962 0.79035 0.90335 0.84209 1.93005 1.93207 1.77471 1.54377 1.92982 1.39116 1.89044 1.96823 0.92380 0.95556 0.95522 0.77633 0.88772 0.88681 0.90822 0.88999 0.90604 0.90101 0.89238 0.88463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -14.75 9.28 -34.44 -0.32 -15.07 16 8 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 9 C 0.25 6.58 5.43 -5.19 -0.03 6.55 16 10 N -0.71 -14.82 5.55 -61.47 -0.34 -15.16 16 11 C 0.50 9.63 7.61 -10.98 -0.08 9.54 16 12 O -0.55 -12.61 14.78 5.55 0.08 -12.53 16 13 C -0.14 -1.91 4.18 -27.88 -0.12 -2.03 16 14 C -0.11 -1.47 2.40 -89.51 -0.21 -1.69 16 15 H 0.11 1.58 7.82 -51.93 -0.41 1.17 16 16 C -0.11 -1.33 5.40 -25.03 -0.14 -1.46 16 17 C -0.13 -1.13 6.91 -24.70 -0.17 -1.30 16 18 C -0.16 -1.44 6.40 -25.07 -0.16 -1.60 16 19 C 0.28 3.34 2.53 -25.61 -0.06 3.27 16 20 F -0.20 -2.65 17.04 2.25 0.04 -2.61 16 21 F -0.20 -2.52 15.46 2.25 0.03 -2.48 16 22 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 23 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.39 7.01 8.32 -40.82 -0.34 6.67 16 26 H 0.09 1.24 7.78 -51.92 -0.40 0.84 16 27 H 0.09 1.16 7.97 -51.93 -0.41 0.75 16 28 H 0.07 0.88 7.77 -51.93 -0.40 0.48 16 29 H 0.09 1.27 7.63 -51.93 -0.40 0.88 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.70 8.11 -51.93 -0.42 0.28 16 33 H 0.10 0.77 8.12 -51.93 -0.42 0.35 16 LS Contribution 284.56 15.07 4.29 4.29 Total: -1.00 -31.11 284.56 -6.00 -37.12 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -4.43 Total: 3.01 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -1.39 Total: -2.10 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.40 Total: -40.47 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.08 Total: -12.53 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.07 Total: -5.09 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.11 -6.00 -37.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713934699.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.133 kcal (2) G-P(sol) polarization free energy of solvation -31.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds