Wall clock time and date at job start Mon Mar 30 2020 04:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31795 * 119.12069 * 2 1 4 4 C 1.32334 * 120.81807 * 180.27980 * 3 2 1 5 5 C 1.38590 * 119.10653 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.80548 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.52379 * 179.89848 * 6 5 4 8 8 C 1.53117 * 109.52257 * 59.69908 * 6 5 4 9 9 C 1.53036 * 109.27759 * 182.44447 * 8 6 5 10 10 N 1.46847 * 109.52198 * 59.18123 * 9 8 6 11 11 C 1.46839 * 111.20115 * 298.25706 * 10 9 8 12 12 H 1.08998 * 109.46075 * 181.75442 * 11 10 9 13 13 C 1.50705 * 109.46234 * 301.72676 * 11 10 9 14 14 H 1.08000 * 119.99956 * 120.05655 * 13 11 10 15 15 C 1.37872 * 119.99985 * 300.04820 * 13 11 10 16 16 N 1.31512 * 119.99907 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 119.99994 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47050 * 0.02562 * 17 15 13 19 19 H 1.48493 * 109.47033 * 120.00284 * 17 15 13 20 20 H 1.48500 * 109.46925 * 240.00538 * 17 15 13 21 21 C 1.53035 * 109.52446 * 61.74298 * 11 10 9 22 22 C 1.38602 * 118.39861 * 0.02562 * 5 4 3 23 23 N 1.31794 * 119.12500 * 180.27383 * 2 1 3 24 24 H 1.08994 * 109.47421 * 269.72666 * 1 2 3 25 25 H 1.09004 * 109.47148 * 29.72755 * 1 2 3 26 26 H 1.09001 * 109.46845 * 149.72732 * 1 2 3 27 27 H 1.07998 * 120.44732 * 179.97438 * 4 3 2 28 28 H 1.08993 * 109.50794 * 302.38479 * 8 6 5 29 29 H 1.09001 * 109.50156 * 62.51010 * 8 6 5 30 30 H 1.09007 * 109.46337 * 299.16475 * 9 8 6 31 31 H 1.09003 * 109.45784 * 179.19433 * 9 8 6 32 32 H 1.00902 * 110.99910 * 174.16327 * 10 9 8 33 33 H 0.97003 * 119.99574 * 179.97438 * 16 15 13 34 34 H 1.09003 * 109.51024 * 180.88199 * 21 11 10 35 35 H 1.08999 * 109.50358 * 60.75753 * 21 11 10 36 36 H 1.08004 * 120.44687 * 180.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1484 1.1514 0.0000 4 6 3.4712 1.1906 -0.0055 5 6 4.1809 0.0002 -0.0109 6 6 5.6878 0.0002 -0.0179 7 1 6.0521 -1.0272 -0.0195 8 6 6.2053 0.7261 1.2270 9 6 7.7342 0.7763 1.1836 10 7 8.1679 1.4792 -0.0306 11 6 7.7229 0.7746 -1.2396 12 1 8.0857 1.3023 -2.1217 13 6 8.2714 -0.6291 -1.2333 14 1 7.5969 -1.4724 -1.2486 15 6 9.6342 -0.8366 -1.2083 16 7 10.4555 0.1904 -1.1894 17 14 10.3140 -2.5765 -1.1998 18 1 9.1904 -3.5471 -1.2239 19 1 11.1688 -2.7798 -2.3969 20 1 11.1233 -2.7857 0.0276 21 6 6.1937 0.7244 -1.2686 22 6 3.4712 -1.1904 -0.0107 23 7 2.1485 -1.1513 -0.0055 24 1 -0.3634 -0.0049 1.0276 25 1 -0.3633 0.8924 -0.5096 26 1 -0.3633 -0.8876 -0.5181 27 1 3.9906 2.1374 -0.0059 28 1 5.8084 1.7410 1.2478 29 1 5.8840 0.1907 2.1204 30 1 8.1309 -0.2390 1.1768 31 1 8.1052 1.3052 2.0616 32 1 9.1686 1.6089 -0.0354 33 1 11.4143 0.0443 -1.1714 34 1 5.8639 0.1877 -2.1582 35 1 5.7965 1.7393 -1.2871 36 1 3.9908 -2.1372 -0.0143 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259712082.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:31 Heat of formation + Delta-G solvation = 12.924022 kcal Electronic energy + Delta-G solvation = -18026.596811 eV Core-core repulsion = 15316.051459 eV Total energy + Delta-G solvation = -2710.545352 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.13653 -39.51115 -35.59910 -34.66732 -34.00138 -31.98089 -31.51740 -28.74636 -27.12496 -25.67712 -24.56661 -23.31194 -22.39803 -20.47518 -18.52642 -17.86171 -17.74859 -17.17417 -16.42430 -16.13242 -15.56947 -15.01243 -14.61399 -14.50069 -14.30382 -14.09832 -14.02115 -13.35823 -13.33661 -13.16444 -12.94265 -12.81890 -12.50500 -12.36964 -12.00000 -11.80457 -11.66791 -11.36964 -11.19141 -10.91993 -10.54044 -10.15184 -9.98881 -8.90068 -8.03535 -6.27086 -0.05478 0.09730 1.35889 1.40895 1.49093 2.39536 2.75399 3.08079 3.12594 3.21470 3.70085 3.75542 3.87496 4.09713 4.22882 4.30627 4.46904 4.65473 4.67420 4.73487 4.74702 4.89979 4.96900 5.01964 5.06832 5.16609 5.23884 5.29403 5.39142 5.52003 5.57997 5.71967 5.74990 6.01710 6.20907 6.73708 6.95795 7.11168 7.11255 7.46444 8.89802 Molecular weight = 247.14amu Principal moments of inertia in cm(-1) A = 0.035948 B = 0.005843 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.713797 B = 4791.223732 C = 5193.908581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.285 3.715 3 N -0.532 5.532 4 C 0.151 3.849 5 C -0.174 4.174 6 C -0.021 4.021 7 H 0.073 0.927 8 C -0.090 4.090 9 C 0.069 3.931 10 N -0.688 5.688 11 C 0.202 3.798 12 H 0.004 0.996 13 C -0.542 4.542 14 H 0.053 0.947 15 C 0.022 3.978 16 N -0.919 5.919 17 Si 0.944 3.056 18 H -0.269 1.269 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.082 4.082 22 C 0.143 3.857 23 N -0.533 5.533 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.178 0.822 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.013 0.987 31 H 0.058 0.942 32 H 0.342 0.658 33 H 0.263 0.737 34 H 0.044 0.956 35 H 0.056 0.944 36 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.768 -0.433 4.342 14.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.018 3.982 3 N -0.246 5.246 4 C -0.014 4.014 5 C -0.178 4.178 6 C -0.041 4.041 7 H 0.092 0.908 8 C -0.128 4.128 9 C -0.061 4.061 10 N -0.320 5.320 11 C 0.094 3.906 12 H 0.022 0.978 13 C -0.582 4.582 14 H 0.071 0.929 15 C -0.177 4.177 16 N -0.559 5.559 17 Si 0.771 3.229 18 H -0.193 1.193 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.120 4.120 22 C -0.022 4.022 23 N -0.247 5.247 24 H 0.115 0.885 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.195 0.805 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.031 0.969 31 H 0.076 0.924 32 H 0.161 0.839 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -15.151 0.050 4.346 15.762 hybrid contribution 2.692 -1.663 -0.278 3.176 sum -12.459 -1.613 4.068 13.206 Atomic orbital electron populations 1.20633 0.83456 1.04814 1.04784 1.23952 0.99750 0.83401 0.91080 1.68334 1.10221 1.30865 1.15203 1.23327 0.89201 0.99131 0.89766 1.21781 0.98613 0.95548 1.01859 1.19870 0.87126 1.00925 0.96149 0.90817 1.21502 0.94926 1.00184 0.96184 1.21605 0.95213 0.96443 0.92886 1.60955 1.19851 1.49009 1.02187 1.18998 0.91037 0.91189 0.89422 0.97780 1.22077 0.91766 0.94280 1.50065 0.92886 1.25638 0.97607 0.99828 0.94663 1.69834 1.03270 1.31019 1.51792 0.85716 0.78381 0.81467 0.77330 1.19284 1.21122 1.20965 1.21469 0.96066 0.98578 0.95922 1.23472 0.89409 0.99093 0.90270 1.68316 1.10198 1.30946 1.15272 0.88452 0.88865 0.88929 0.80537 0.91276 0.91397 0.96893 0.92372 0.83915 0.92760 0.93743 0.92563 0.80321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.41 10.32 71.24 0.74 -0.68 16 2 C 0.28 7.69 7.64 138.75 1.06 8.75 16 3 N -0.53 -15.32 10.33 -187.85 -1.94 -17.26 16 4 C 0.15 4.32 9.98 84.70 0.85 5.17 16 5 C -0.17 -5.15 4.80 -19.69 -0.09 -5.24 16 6 C -0.02 -0.70 2.21 -11.46 -0.03 -0.72 16 7 H 0.07 2.69 6.54 -2.39 -0.02 2.68 16 8 C -0.09 -2.93 5.23 30.65 0.16 -2.77 16 9 C 0.07 2.72 6.30 86.33 0.54 3.27 16 10 N -0.69 -31.14 6.60 -495.57 -3.27 -34.41 16 11 C 0.20 9.59 3.04 44.19 0.13 9.72 16 12 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 13 C -0.54 -27.57 6.47 25.60 0.17 -27.40 16 14 H 0.05 2.67 6.76 -2.91 -0.02 2.65 16 15 C 0.02 1.15 5.39 84.65 0.46 1.61 16 16 N -0.92 -49.98 11.56 21.45 0.25 -49.73 16 17 Si 0.94 41.91 29.54 68.60 2.03 43.94 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 19 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 21 C -0.08 -3.17 4.71 30.65 0.14 -3.03 16 22 C 0.14 4.07 10.96 84.70 0.93 5.00 16 23 N -0.53 -15.36 10.33 -187.84 -1.94 -17.30 16 24 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.09 1.47 8.14 -2.39 -0.02 1.46 16 26 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.18 4.56 7.23 -2.91 -0.02 4.53 16 28 H 0.07 2.11 7.39 -2.39 -0.02 2.09 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.01 0.58 6.99 -2.38 -0.02 0.56 16 31 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.34 17.17 6.95 -89.69 -0.62 16.55 16 33 H 0.26 13.76 8.31 -92.71 -0.77 12.98 16 34 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.06 2.02 7.41 -2.39 -0.02 2.00 16 36 H 0.18 4.42 8.01 -2.91 -0.02 4.40 16 Total: -1.00 -57.62 289.32 0.63 -56.99 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 0.46 Total: 24.11 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: 5.05 Total: -6.33 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -6.91 Total: -118.70 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -57.62 0.63 -56.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259712082.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.909 kcal (2) G-P(sol) polarization free energy of solvation -57.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds