Wall clock time and date at job start Mon Mar 30 2020 04:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31815 * 119.12048 * 2 1 4 4 C 1.32316 * 120.81831 * 179.97438 * 3 2 1 5 5 C 1.38627 * 119.10313 * 359.97438 * 4 3 2 6 6 C 1.38575 * 118.39786 * 0.02562 * 5 4 3 7 7 C 1.50699 * 120.44880 * 180.02562 * 6 5 4 8 8 N 1.46906 * 109.47317 * 94.99307 * 7 6 5 9 9 C 1.47897 * 110.99555 * 69.87469 * 8 7 6 10 10 C 1.54000 * 107.05672 * 145.84575 * 9 8 7 11 11 C 1.54598 * 105.22213 * 358.72428 * 10 9 8 12 12 C 1.48533 * 111.00245 * 187.27419 * 8 7 6 13 13 H 1.09003 * 110.66452 * 318.71648 * 12 8 7 14 14 C 1.50697 * 110.66703 * 81.67494 * 12 8 7 15 15 H 1.08000 * 120.00110 * 0.02562 * 14 12 8 16 16 C 1.37884 * 120.00008 * 180.02562 * 14 12 8 17 17 N 1.31518 * 119.99354 * 359.97438 * 16 14 12 18 18 Si 1.86793 * 119.99977 * 180.02562 * 16 14 12 19 19 H 1.48491 * 109.47320 * 59.99973 * 18 16 14 20 20 H 1.48503 * 109.46746 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47060 * 299.99561 * 18 16 14 22 22 N 1.31781 * 119.12368 * 180.25032 * 2 1 3 23 23 H 1.09001 * 109.46791 * 90.00639 * 1 2 3 24 24 H 1.09005 * 109.46766 * 210.00119 * 1 2 3 25 25 H 1.09002 * 109.47132 * 330.00520 * 1 2 3 26 26 H 1.08001 * 120.45000 * 180.02562 * 4 3 2 27 27 H 1.08002 * 120.79879 * 179.97438 * 5 4 3 28 28 H 1.09004 * 109.46704 * 334.99735 * 7 6 5 29 29 H 1.08991 * 109.47304 * 214.99475 * 7 6 5 30 30 H 1.09000 * 109.91881 * 26.49521 * 9 8 7 31 31 H 1.08997 * 109.91908 * 265.19336 * 9 8 7 32 32 H 1.09002 * 110.31026 * 117.69182 * 10 9 8 33 33 H 1.09000 * 110.30915 * 239.76211 * 10 9 8 34 34 H 1.09003 * 110.72246 * 96.45403 * 11 10 9 35 35 H 1.09003 * 110.72391 * 219.72762 * 11 10 9 36 36 H 0.96998 * 119.99200 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4711 1.1907 0.0005 5 6 4.1809 0.0000 0.0016 6 6 3.4713 -1.1903 0.0015 7 6 4.1962 -2.5115 0.0033 8 7 4.3244 -2.9979 1.3835 9 6 3.0108 -3.4085 1.9249 10 6 3.2624 -4.6033 2.8633 11 6 4.7851 -4.8611 2.7930 12 6 5.1835 -4.2081 1.4438 13 1 4.9624 -4.8786 0.6133 14 6 6.6413 -3.8261 1.4430 15 1 6.9268 -2.7853 1.4024 16 6 7.6106 -4.8054 1.4942 17 7 7.2628 -6.0728 1.5441 18 14 9.4175 -4.3319 1.4939 19 1 9.7061 -3.4795 2.6751 20 1 10.2509 -5.5596 1.5533 21 1 9.7321 -3.5803 0.2523 22 7 2.1484 -1.1512 -0.0050 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 3.9906 2.1376 0.0009 27 1 5.2610 0.0000 0.0016 28 1 5.1880 -2.3823 -0.4300 29 1 3.6336 -3.2353 -0.5862 30 1 2.3509 -3.7084 1.1108 31 1 2.5655 -2.5852 2.4834 32 1 2.9678 -4.3527 3.8824 33 1 2.7141 -5.4791 2.5162 34 1 5.2975 -4.3744 3.6229 35 1 4.9952 -5.9306 2.7827 36 1 7.9448 -6.7617 1.5797 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259899363.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:41 Heat of formation + Delta-G solvation = 46.783268 kcal Electronic energy + Delta-G solvation = -17859.438853 eV Core-core repulsion = 15150.361748 eV Total energy + Delta-G solvation = -2709.077105 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.84861 -37.91087 -34.13186 -33.21742 -32.56225 -30.75811 -28.37937 -28.22136 -25.99865 -24.28958 -23.06886 -21.80318 -19.74247 -19.56086 -17.39992 -16.50986 -16.02580 -15.34354 -14.98345 -14.74210 -14.48575 -14.06134 -13.45642 -13.19956 -12.73401 -12.58363 -12.42413 -12.25330 -11.90810 -11.47946 -11.08408 -10.79704 -10.72672 -10.69457 -10.55365 -10.37983 -10.07882 -9.83661 -9.60955 -9.18677 -9.01170 -8.96892 -8.45726 -7.42028 -6.05891 -4.07574 1.13586 1.28648 3.30623 3.35583 3.38006 3.89688 4.09200 4.27463 4.39257 4.73106 5.13489 5.24578 5.26769 5.34322 5.49479 5.53315 5.56683 5.68955 5.74738 5.87573 5.95216 6.08508 6.19455 6.31080 6.42492 6.56758 6.64321 6.65959 7.02276 7.09384 7.25604 7.38931 7.49424 7.77549 8.00317 8.12725 8.31967 8.45398 8.97423 9.56628 11.03994 Molecular weight = 247.14amu Principal moments of inertia in cm(-1) A = 0.028390 B = 0.006216 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.015570 B = 4503.635043 C = 5267.098276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.308 3.692 3 N -0.532 5.532 4 C 0.143 3.857 5 C -0.215 4.215 6 C 0.203 3.797 7 C 0.098 3.902 8 N -0.509 5.509 9 C 0.045 3.955 10 C -0.138 4.138 11 C -0.100 4.100 12 C 0.207 3.793 13 H 0.015 0.985 14 C -0.501 4.501 15 H 0.063 0.937 16 C 0.061 3.939 17 N -0.893 5.893 18 Si 0.897 3.103 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.278 1.278 22 N -0.515 5.515 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.165 0.835 27 H 0.149 0.851 28 H 0.100 0.900 29 H 0.047 0.953 30 H 0.038 0.962 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.774 9.092 -2.688 12.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.040 3.960 3 N -0.248 5.248 4 C -0.022 4.022 5 C -0.237 4.237 6 C 0.056 3.944 7 C -0.031 4.031 8 N -0.234 5.234 9 C -0.084 4.084 10 C -0.176 4.176 11 C -0.139 4.139 12 C 0.101 3.899 13 H 0.033 0.967 14 C -0.540 4.540 15 H 0.081 0.919 16 C -0.141 4.141 17 N -0.531 5.531 18 Si 0.725 3.275 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.203 1.203 22 N -0.231 5.231 23 H 0.099 0.901 24 H 0.102 0.898 25 H 0.100 0.900 26 H 0.182 0.818 27 H 0.167 0.833 28 H 0.118 0.882 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.456 9.314 -2.393 13.487 hybrid contribution 1.655 -0.416 -0.426 1.759 sum -7.801 8.897 -2.819 12.164 Atomic orbital electron populations 1.20500 0.86223 1.03822 1.03426 1.23170 0.97952 0.83653 0.91209 1.68180 1.10269 1.30592 1.15750 1.23142 0.89657 0.98526 0.90880 1.22795 1.03314 0.93915 1.03697 1.21919 0.88937 0.96524 0.87021 1.21114 0.99068 0.89927 0.93026 1.64846 1.09150 1.34235 1.15193 1.22711 0.91883 0.96421 0.97380 1.22511 0.99795 0.96935 0.98405 1.22434 0.90571 1.01224 0.99639 1.20362 0.91828 0.84396 0.93281 0.96721 1.20926 0.89374 0.93203 1.50495 0.91919 1.24944 0.99054 0.94899 0.95173 1.69950 1.33517 0.99299 1.50377 0.86586 0.84655 0.77683 0.78621 1.20214 1.21400 1.20320 1.68136 1.10058 1.30233 1.14654 0.90070 0.89819 0.90010 0.81832 0.83324 0.88229 0.93450 0.94357 0.92731 0.92899 0.92934 0.92557 0.91074 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.32 36.01 0.37 -0.52 16 2 C 0.31 4.66 7.64 -157.19 -1.20 3.46 16 3 N -0.53 -7.94 10.33 -10.72 -0.11 -8.05 16 4 C 0.14 1.93 11.31 -17.20 -0.19 1.74 16 5 C -0.21 -3.22 9.84 -39.31 -0.39 -3.60 16 6 C 0.20 3.50 5.96 -82.24 -0.49 3.01 16 7 C 0.10 1.87 5.07 -4.97 -0.03 1.84 16 8 N -0.51 -10.96 4.94 -225.32 -1.11 -12.07 16 9 C 0.04 0.88 5.84 -2.75 -0.02 0.86 16 10 C -0.14 -2.71 6.92 -25.37 -0.18 -2.88 16 11 C -0.10 -2.33 5.96 -24.79 -0.15 -2.48 16 12 C 0.21 5.09 2.15 -66.86 -0.14 4.95 16 13 H 0.02 0.40 8.02 -51.93 -0.42 -0.01 16 14 C -0.50 -13.34 8.45 -34.44 -0.29 -13.63 16 15 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 16 C 0.06 1.65 5.36 -17.82 -0.10 1.55 16 17 N -0.89 -24.98 12.40 55.43 0.69 -24.29 16 18 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 N -0.52 -8.76 9.86 -6.99 -0.07 -8.83 16 23 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 27 H 0.15 2.00 8.06 -52.49 -0.42 1.57 16 28 H 0.10 1.91 7.74 -51.93 -0.40 1.51 16 29 H 0.05 0.91 7.81 -51.93 -0.41 0.51 16 30 H 0.04 0.74 7.57 -51.93 -0.39 0.35 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 1.37 8.05 -51.93 -0.42 0.95 16 35 H 0.07 1.76 7.66 -51.93 -0.40 1.37 16 36 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 301.15 15.07 4.54 4.54 Total: -1.00 -29.36 301.15 -9.24 -38.61 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -5.36 Total: 0.00 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -2.80 Total: -5.71 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -0.60 Total: -53.25 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.36 -9.24 -38.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259899363.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.390 kcal (2) G-P(sol) polarization free energy of solvation -29.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds