Wall clock time and date at job start Mon Mar 30 2020 04:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31815 * 119.12048 * 2 1 4 4 C 1.32316 * 120.81831 * 179.97438 * 3 2 1 5 5 C 1.38627 * 119.10313 * 359.97438 * 4 3 2 6 6 C 1.38575 * 118.39786 * 0.02562 * 5 4 3 7 7 C 1.50699 * 120.44880 * 180.02562 * 6 5 4 8 8 N 1.46906 * 109.47317 * 94.99307 * 7 6 5 9 9 C 1.47897 * 110.99555 * 69.87469 * 8 7 6 10 10 C 1.54000 * 107.05672 * 145.84575 * 9 8 7 11 11 C 1.54598 * 105.22213 * 358.72428 * 10 9 8 12 12 C 1.48533 * 111.00245 * 187.27419 * 8 7 6 13 13 H 1.09003 * 110.66452 * 318.71648 * 12 8 7 14 14 C 1.50697 * 110.66703 * 81.67494 * 12 8 7 15 15 H 1.08000 * 120.00110 * 0.02562 * 14 12 8 16 16 C 1.37884 * 120.00008 * 180.02562 * 14 12 8 17 17 N 1.31518 * 119.99354 * 359.97438 * 16 14 12 18 18 Si 1.86793 * 119.99977 * 180.02562 * 16 14 12 19 19 H 1.48491 * 109.47320 * 59.99973 * 18 16 14 20 20 H 1.48503 * 109.46746 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47060 * 299.99561 * 18 16 14 22 22 N 1.31781 * 119.12368 * 180.25032 * 2 1 3 23 23 H 1.09001 * 109.46791 * 90.00639 * 1 2 3 24 24 H 1.09005 * 109.46766 * 210.00119 * 1 2 3 25 25 H 1.09002 * 109.47132 * 330.00520 * 1 2 3 26 26 H 1.08001 * 120.45000 * 180.02562 * 4 3 2 27 27 H 1.08002 * 120.79879 * 179.97438 * 5 4 3 28 28 H 1.09004 * 109.46704 * 334.99735 * 7 6 5 29 29 H 1.08991 * 109.47304 * 214.99475 * 7 6 5 30 30 H 1.09000 * 109.91881 * 26.49521 * 9 8 7 31 31 H 1.08997 * 109.91908 * 265.19336 * 9 8 7 32 32 H 1.09002 * 110.31026 * 117.69182 * 10 9 8 33 33 H 1.09000 * 110.30915 * 239.76211 * 10 9 8 34 34 H 1.09003 * 110.72246 * 96.45403 * 11 10 9 35 35 H 1.09003 * 110.72391 * 219.72762 * 11 10 9 36 36 H 0.96998 * 119.99200 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4711 1.1907 0.0005 5 6 4.1809 0.0000 0.0016 6 6 3.4713 -1.1903 0.0015 7 6 4.1962 -2.5115 0.0033 8 7 4.3244 -2.9979 1.3835 9 6 3.0108 -3.4085 1.9249 10 6 3.2624 -4.6033 2.8633 11 6 4.7851 -4.8611 2.7930 12 6 5.1835 -4.2081 1.4438 13 1 4.9624 -4.8786 0.6133 14 6 6.6413 -3.8261 1.4430 15 1 6.9268 -2.7853 1.4024 16 6 7.6106 -4.8054 1.4942 17 7 7.2628 -6.0728 1.5441 18 14 9.4175 -4.3319 1.4939 19 1 9.7061 -3.4795 2.6751 20 1 10.2509 -5.5596 1.5533 21 1 9.7321 -3.5803 0.2523 22 7 2.1484 -1.1512 -0.0050 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 3.9906 2.1376 0.0009 27 1 5.2610 0.0000 0.0016 28 1 5.1880 -2.3823 -0.4300 29 1 3.6336 -3.2353 -0.5862 30 1 2.3509 -3.7084 1.1108 31 1 2.5655 -2.5852 2.4834 32 1 2.9678 -4.3527 3.8824 33 1 2.7141 -5.4791 2.5162 34 1 5.2975 -4.3744 3.6229 35 1 4.9952 -5.9306 2.7827 36 1 7.9448 -6.7617 1.5797 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259899363.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:41 Heat of formation + Delta-G solvation = 28.341242 kcal Electronic energy + Delta-G solvation = -17860.238559 eV Core-core repulsion = 15150.361748 eV Total energy + Delta-G solvation = -2709.876811 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.02419 -39.61554 -35.50989 -34.53188 -34.31346 -32.27560 -30.12245 -29.40744 -27.46638 -26.24226 -24.22246 -23.11855 -21.61854 -21.18957 -18.65568 -18.41594 -17.29340 -16.92938 -16.38118 -16.11954 -16.07152 -15.66690 -14.92304 -14.43334 -14.31068 -14.03195 -13.71578 -13.47897 -13.19362 -13.12524 -12.94276 -12.57698 -12.51193 -12.30989 -11.98464 -11.79160 -11.71727 -11.54970 -11.40251 -10.96776 -10.50744 -10.32158 -10.18446 -9.17709 -8.12026 -6.20447 -0.02981 0.11670 1.45505 1.47050 1.54478 2.44066 2.71419 2.98345 3.17672 3.19591 3.49049 3.58535 4.02509 4.08879 4.13552 4.20779 4.35757 4.44000 4.56231 4.64525 4.68482 4.73337 4.75515 4.85553 4.99963 5.03983 5.08113 5.14555 5.31628 5.50206 5.53390 5.59603 5.72764 6.07431 6.13435 6.31197 6.50597 6.89607 7.15905 7.47475 8.97250 Molecular weight = 247.14amu Principal moments of inertia in cm(-1) A = 0.028390 B = 0.006216 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.015570 B = 4503.635043 C = 5267.098276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.297 3.703 3 N -0.539 5.539 4 C 0.153 3.847 5 C -0.221 4.221 6 C 0.182 3.818 7 C 0.104 3.896 8 N -0.515 5.515 9 C 0.052 3.948 10 C -0.129 4.129 11 C -0.096 4.096 12 C 0.208 3.792 13 H -0.018 1.018 14 C -0.514 4.514 15 H 0.059 0.941 16 C 0.014 3.986 17 N -0.922 5.922 18 Si 0.960 3.040 19 H -0.272 1.272 20 H -0.287 1.287 21 H -0.269 1.269 22 N -0.535 5.535 23 H 0.097 0.903 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.205 0.795 27 H 0.160 0.840 28 H 0.091 0.909 29 H 0.038 0.962 30 H 0.040 0.960 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.041 0.959 35 H 0.049 0.951 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.219 11.004 -2.555 14.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.030 3.970 3 N -0.254 5.254 4 C -0.013 4.013 5 C -0.243 4.243 6 C 0.036 3.964 7 C -0.025 4.025 8 N -0.240 5.240 9 C -0.076 4.076 10 C -0.167 4.167 11 C -0.135 4.135 12 C 0.101 3.899 13 H 0.000 1.000 14 C -0.552 4.552 15 H 0.077 0.923 16 C -0.185 4.185 17 N -0.562 5.562 18 Si 0.785 3.215 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.194 1.194 22 N -0.252 5.252 23 H 0.115 0.885 24 H 0.105 0.895 25 H 0.115 0.885 26 H 0.222 0.778 27 H 0.178 0.822 28 H 0.110 0.890 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.920 11.237 -2.264 15.159 hybrid contribution 1.744 -0.956 -0.500 2.050 sum -8.177 10.281 -2.764 13.424 Atomic orbital electron populations 1.20628 0.83651 1.04707 1.04704 1.23899 0.99578 0.83194 0.90324 1.68313 1.10928 1.30349 1.15854 1.23787 0.89306 0.99507 0.88680 1.22958 1.03997 0.93697 1.03632 1.21646 0.89541 0.96124 0.89074 1.20977 0.98931 0.91088 0.91511 1.64752 1.09808 1.32548 1.16908 1.22667 0.91007 0.96584 0.97363 1.22467 0.96863 0.97491 0.99864 1.22243 0.93407 0.99449 0.98374 1.20164 0.91869 0.85179 0.92642 1.00017 1.21185 0.90668 0.93077 1.50316 0.92253 1.25704 1.03162 0.94795 0.94820 1.70074 1.34694 1.00172 1.51225 0.85586 0.79609 0.77389 0.78894 1.19760 1.21242 1.19405 1.68102 1.09947 1.31472 1.15634 0.88478 0.89511 0.88489 0.77822 0.82208 0.89041 0.94389 0.94144 0.92060 0.90644 0.91607 0.93994 0.93214 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.55 10.32 71.24 0.74 -0.82 16 2 C 0.30 8.43 7.64 138.75 1.06 9.49 16 3 N -0.54 -14.71 10.33 -187.83 -1.94 -16.65 16 4 C 0.15 3.70 11.31 84.71 0.96 4.66 16 5 C -0.22 -6.27 9.84 22.44 0.22 -6.04 16 6 C 0.18 6.19 5.96 42.56 0.25 6.44 16 7 C 0.10 4.04 5.07 85.56 0.43 4.48 16 8 N -0.52 -22.36 4.94 -866.78 -4.28 -26.64 16 9 C 0.05 2.02 5.84 86.45 0.50 2.52 16 10 C -0.13 -4.94 6.92 31.48 0.22 -4.72 16 11 C -0.10 -4.55 5.96 31.85 0.19 -4.36 16 12 C 0.21 10.50 2.15 44.57 0.10 10.60 16 13 H -0.02 -1.00 8.02 -2.39 -0.02 -1.02 16 14 C -0.51 -27.82 8.45 25.60 0.22 -27.60 16 15 H 0.06 3.18 7.81 -2.91 -0.02 3.15 16 16 C 0.01 0.78 5.36 84.66 0.45 1.23 16 17 N -0.92 -52.68 12.40 21.45 0.27 -52.42 16 18 Si 0.96 42.86 29.54 68.60 2.03 44.88 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 22 N -0.54 -17.68 9.86 -176.02 -1.73 -19.42 16 23 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 25 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.21 3.13 8.06 -2.91 -0.02 3.11 16 27 H 0.16 4.06 8.06 -2.91 -0.02 4.04 16 28 H 0.09 3.62 7.74 -2.39 -0.02 3.60 16 29 H 0.04 1.52 7.81 -2.39 -0.02 1.50 16 30 H 0.04 1.55 7.57 -2.39 -0.02 1.53 16 31 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.04 2.07 8.05 -2.39 -0.02 2.05 16 35 H 0.05 2.54 7.66 -2.39 -0.02 2.52 16 36 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -63.17 301.15 0.73 -62.44 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 1.05 Total: 11.92 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 5.34 Total: -4.13 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -7.69 Total: -115.12 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -63.17 0.73 -62.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259899363.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.786 kcal (2) G-P(sol) polarization free energy of solvation -63.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds