Wall clock time and date at job start Mon Mar 30 2020 04:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31385 * 118.91884 * 2 1 4 4 C 1.34209 * 120.77609 * 180.28975 * 3 2 1 5 5 C 1.41601 * 120.62466 * 179.71266 * 4 3 2 6 6 H 1.07999 * 120.00223 * 186.71508 * 5 4 3 7 7 C 1.40078 * 119.99737 * 6.72617 * 5 4 3 8 8 N 1.30690 * 119.99770 * 181.96070 * 7 5 4 9 9 Si 1.86803 * 120.00061 * 2.23074 * 7 5 4 10 10 H 1.48495 * 109.47036 * 179.73097 * 9 7 5 11 11 H 1.48500 * 109.47054 * 299.72786 * 9 7 5 12 12 H 1.48499 * 109.46947 * 59.72975 * 9 7 5 13 13 C 1.40550 * 118.75497 * 359.44464 * 4 3 2 14 14 C 1.39434 * 118.06599 * 0.27351 * 13 4 3 15 15 N 1.38602 * 120.46248 * 180.02562 * 14 13 4 16 16 C 1.46847 * 111.00355 * 304.21247 * 15 14 13 17 17 C 1.53037 * 109.52485 * 174.16077 * 16 15 14 18 18 C 1.53119 * 109.27826 * 59.17530 * 17 16 15 19 19 C 1.53113 * 109.16360 * 302.34601 * 18 17 16 20 20 C 1.46851 * 111.00171 * 179.97438 * 15 14 13 21 21 N 1.31968 * 118.92338 * 179.72482 * 2 1 3 22 22 H 1.08998 * 109.46508 * 270.27496 * 1 2 3 23 23 H 1.08997 * 109.47390 * 30.27405 * 1 2 3 24 24 H 1.09000 * 109.47095 * 150.27737 * 1 2 3 25 25 H 0.96996 * 120.00245 * 355.10601 * 8 7 5 26 26 H 1.07992 * 120.96791 * 180.24803 * 13 4 3 27 27 H 1.09006 * 109.45641 * 294.17304 * 16 15 14 28 28 H 1.08995 * 109.46354 * 54.14099 * 16 15 14 29 29 H 1.08998 * 109.50165 * 299.23768 * 17 16 15 30 30 H 1.09001 * 109.50219 * 179.11395 * 17 16 15 31 31 H 1.09001 * 109.52207 * 182.43689 * 18 17 16 32 32 H 1.08999 * 109.57427 * 62.28540 * 18 17 16 33 33 H 1.08997 * 109.50203 * 297.71449 * 19 18 17 34 34 H 1.09001 * 109.53790 * 177.61592 * 19 18 17 35 35 H 1.09000 * 109.45978 * 305.85897 * 20 15 14 36 36 H 1.09003 * 109.45694 * 65.83443 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1424 1.1500 0.0000 4 6 3.4838 1.1935 -0.0058 5 6 4.1652 2.4348 -0.0119 6 1 5.2388 2.4609 -0.1259 7 6 3.4467 3.6288 0.1302 8 7 4.0710 4.7762 0.0861 9 14 1.5975 3.5810 0.3901 10 1 1.0795 4.9668 0.5170 11 1 0.9517 2.9154 -0.7697 12 1 1.2914 2.8226 1.6296 13 6 4.1995 -0.0161 0.0000 14 6 3.4747 -1.2072 0.0057 15 7 4.1301 -2.4285 0.0121 16 6 5.0586 -2.5335 -1.1207 17 6 5.8672 -3.8272 -1.0009 18 6 4.9102 -5.0224 -0.9887 19 6 3.9233 -4.8642 0.1712 20 6 3.1709 -3.5404 0.0180 21 7 2.1453 -1.1551 0.0055 22 1 -0.3632 0.0049 1.0277 23 1 -0.3634 0.8875 -0.5181 24 1 -0.3633 -0.8925 -0.5095 25 1 5.0388 4.7998 0.0264 26 1 5.2794 -0.0227 -0.0004 27 1 4.4941 -2.5431 -2.0531 28 1 5.7362 -1.6798 -1.1152 29 1 6.4426 -3.8123 -0.0752 30 1 6.5452 -3.9126 -1.8502 31 1 5.4790 -5.9433 -0.8600 32 1 4.3625 -5.0612 -1.9303 33 1 4.4680 -4.8656 1.1152 34 1 3.2122 -5.6903 0.1601 35 1 2.4778 -3.4178 0.8503 36 1 2.6151 -3.5455 -0.9197 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260836001.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:51 Heat of formation + Delta-G solvation = 2.276760 kcal Electronic energy + Delta-G solvation = -18102.491091 eV Core-core repulsion = 15391.484039 eV Total energy + Delta-G solvation = -2711.007052 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.69400 -39.71575 -36.30654 -35.26266 -33.84394 -31.99718 -31.86331 -29.22396 -28.18470 -25.77901 -24.17362 -22.84306 -22.36083 -20.77038 -20.51427 -18.39802 -17.60160 -16.49495 -16.24108 -15.94119 -15.60186 -15.32045 -14.99892 -14.92557 -14.71580 -14.29478 -13.95513 -13.89255 -13.46456 -13.24024 -13.17351 -12.80668 -12.32141 -12.21021 -11.82842 -11.79986 -11.48037 -11.42550 -11.37595 -11.24749 -10.85417 -10.39819 -9.70090 -9.27519 -9.25113 -7.09010 0.48077 0.61512 1.58976 1.71117 2.03250 2.44530 2.50348 2.69785 3.41902 3.49202 3.73065 3.85831 3.92829 3.98910 4.23879 4.32566 4.45163 4.59221 4.61800 4.72663 4.77760 4.79533 4.82201 4.84119 4.93258 4.96345 5.05245 5.11440 5.17315 5.24521 5.26491 5.38443 5.46880 5.77161 5.84834 6.00797 6.36986 6.48577 6.75801 7.70548 7.85086 Molecular weight = 247.14amu Principal moments of inertia in cm(-1) A = 0.033971 B = 0.006815 C = 0.005812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.030093 B = 4107.651477 C = 4816.406433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.344 3.656 3 N -0.629 5.629 4 C 0.263 3.737 5 C -0.491 4.491 6 H 0.070 0.930 7 C 0.021 3.979 8 N -0.814 5.814 9 Si 1.184 2.816 10 H -0.325 1.325 11 H -0.272 1.272 12 H -0.296 1.296 13 C -0.350 4.350 14 C 0.354 3.646 15 N -0.480 5.480 16 C 0.061 3.939 17 C -0.110 4.110 18 C -0.118 4.118 19 C -0.114 4.114 20 C 0.072 3.928 21 N -0.635 5.635 22 H 0.092 0.908 23 H 0.081 0.919 24 H 0.096 0.904 25 H 0.284 0.716 26 H 0.114 0.886 27 H 0.032 0.968 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.274 -16.106 -1.987 16.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.073 3.927 3 N -0.358 5.358 4 C 0.137 3.863 5 C -0.525 4.525 6 H 0.088 0.912 7 C -0.198 4.198 8 N -0.436 5.436 9 Si 1.016 2.984 10 H -0.258 1.258 11 H -0.199 1.199 12 H -0.224 1.224 13 C -0.378 4.378 14 C 0.122 3.878 15 N -0.198 5.198 16 C -0.064 4.064 17 C -0.147 4.147 18 C -0.156 4.156 19 C -0.151 4.151 20 C -0.054 4.054 21 N -0.364 5.364 22 H 0.111 0.889 23 H 0.100 0.900 24 H 0.115 0.885 25 H 0.095 0.905 26 H 0.132 0.868 27 H 0.051 0.949 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.007 -15.230 -1.438 15.590 hybrid contribution 2.608 -0.276 -0.659 2.704 sum -0.400 -15.506 -2.097 15.652 Atomic orbital electron populations 1.20618 0.84560 1.04205 1.04252 1.23318 0.98620 0.83284 0.87435 1.67148 1.09405 1.29270 1.29987 1.18852 0.88126 0.93613 0.85755 1.20803 0.95833 0.91657 1.44234 0.91198 1.28591 1.12795 0.90282 0.88154 1.70644 1.12962 1.28048 1.31980 0.81495 0.67721 0.70319 0.78879 1.25797 1.19908 1.22423 1.21780 0.99909 0.92269 1.23847 1.19894 0.88840 0.90287 0.88737 1.58967 1.18821 1.00044 1.41930 1.22283 0.94254 1.00826 0.89085 1.21628 0.97668 0.91969 1.03482 1.21609 0.97251 0.98424 0.98276 1.21668 0.98804 0.95034 0.99617 1.21937 0.93021 0.89352 1.01110 1.68091 1.08306 1.29664 1.30358 0.88920 0.89991 0.88516 0.90498 0.86833 0.94938 0.91235 0.90987 0.89036 0.89186 0.91974 0.91416 0.89179 0.91406 0.94671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.62 10.31 71.24 0.73 -1.88 16 2 C 0.34 15.59 7.64 138.82 1.06 16.65 16 3 N -0.63 -32.41 4.66 -181.57 -0.85 -33.26 16 4 C 0.26 14.27 6.41 40.17 0.26 14.53 16 5 C -0.49 -27.77 9.63 23.55 0.23 -27.54 16 6 H 0.07 4.00 8.05 -2.91 -0.02 3.97 16 7 C 0.02 1.14 5.52 85.31 0.47 1.61 16 8 N -0.81 -44.91 13.65 21.84 0.30 -44.61 16 9 Si 1.18 57.52 25.56 68.60 1.75 59.27 16 10 H -0.32 -15.26 7.11 99.48 0.71 -14.55 16 11 H -0.27 -12.85 6.72 99.48 0.67 -12.18 16 12 H -0.30 -14.44 7.10 99.48 0.71 -13.74 16 13 C -0.35 -17.35 9.05 23.12 0.21 -17.15 16 14 C 0.35 15.81 6.41 133.08 0.85 16.67 16 15 N -0.48 -17.26 4.68 -701.51 -3.28 -20.54 16 16 C 0.06 1.87 5.25 86.33 0.45 2.32 16 17 C -0.11 -2.35 6.09 30.65 0.19 -2.16 16 18 C -0.12 -2.16 6.00 30.67 0.18 -1.98 16 19 C -0.11 -2.42 6.09 30.64 0.19 -2.23 16 20 C 0.07 2.20 4.67 86.32 0.40 2.60 16 21 N -0.64 -28.25 8.72 -185.63 -1.62 -29.87 16 22 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 23 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 24 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 25 H 0.28 15.11 8.72 -92.71 -0.81 14.30 16 26 H 0.11 5.43 7.22 -2.91 -0.02 5.41 16 27 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 28 H 0.07 2.28 6.74 -2.39 -0.02 2.27 16 29 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.07 2.25 7.72 -2.39 -0.02 2.23 16 36 H 0.03 1.11 8.12 -2.39 -0.02 1.10 16 Total: -1.00 -63.75 289.26 2.51 -61.24 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: 0.98 Total: 6.32 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 5.23 Total: 1.45 kcal Atomic # 7 Polarization: -122.83 SS G_CDS: -5.45 Total: -128.28 kcal Atomic # 14 Polarization: 57.52 SS G_CDS: 1.75 Total: 59.27 kcal Total: -63.75 2.51 -61.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260836001.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.514 kcal (2) G-P(sol) polarization free energy of solvation -63.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds