Wall clock time and date at job start Mon Mar 30 2020 04:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.46790 * 2 1 4 4 N 1.32151 * 120.30147 * 33.13690 * 3 2 1 5 5 C 1.32483 * 120.56518 * 179.97438 * 4 3 2 6 6 N 1.38403 * 119.27075 * 179.84682 * 5 4 3 7 7 N 1.32327 * 121.46508 * 359.86541 * 5 4 3 8 8 C 1.32816 * 121.01098 * 0.06540 * 7 5 4 9 9 C 1.37840 * 118.96994 * 359.87463 * 8 7 5 10 10 C 1.50373 * 122.76048 * 179.09356 * 9 8 7 11 11 H 1.09006 * 109.36648 * 257.95061 * 10 9 8 12 12 C 1.50701 * 109.16352 * 138.40693 * 10 9 8 13 13 H 1.08005 * 119.99485 * 353.81366 * 12 10 9 14 14 C 1.37872 * 120.00344 * 173.80516 * 12 10 9 15 15 N 1.31509 * 120.00134 * 0.02562 * 14 12 10 16 16 Si 1.86805 * 119.99972 * 180.02562 * 14 12 10 17 17 H 1.48490 * 109.47113 * 90.00537 * 16 14 12 18 18 H 1.48499 * 109.46808 * 210.00419 * 16 14 12 19 19 H 1.48503 * 109.47100 * 330.00252 * 16 14 12 20 20 C 1.52827 * 110.37958 * 18.24517 * 10 9 8 21 21 C 1.53306 * 108.48077 * 308.85083 * 20 10 9 22 22 C 1.50458 * 118.45736 * 180.34529 * 8 7 5 23 23 H 1.09007 * 109.46812 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47358 * 299.99849 * 1 2 3 25 25 H 1.08992 * 109.47420 * 60.00052 * 1 2 3 26 26 H 1.09002 * 109.47462 * 119.99375 * 2 1 3 27 27 H 1.08997 * 109.47358 * 240.00150 * 2 1 3 28 28 H 0.96998 * 119.99423 * 0.02562 * 6 5 4 29 29 H 0.96990 * 120.00362 * 179.97438 * 6 5 4 30 30 H 0.97002 * 120.00435 * 179.97438 * 15 14 12 31 31 H 1.09001 * 109.63397 * 189.15411 * 20 10 9 32 32 H 1.08996 * 109.80035 * 68.65194 * 20 10 9 33 33 H 1.09001 * 109.63141 * 310.07803 * 21 20 10 34 34 H 1.09000 * 109.63075 * 189.49641 * 21 20 10 35 35 H 1.08997 * 109.30770 * 317.91509 * 22 8 7 36 36 H 1.09002 * 109.30507 * 77.50695 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 1.3537 2.3679 0.6237 5 6 1.7907 3.6186 0.6275 6 7 1.0571 4.5897 1.2864 7 7 2.9128 3.9600 0.0149 8 6 3.6429 3.0567 -0.6293 9 6 3.2167 1.7461 -0.6510 10 6 3.9657 0.6586 -1.3705 11 1 3.4676 0.4408 -2.3153 12 6 3.9777 -0.5826 -0.5159 13 1 3.5800 -0.5510 0.4878 14 6 4.4962 -1.7585 -1.0153 15 7 4.9807 -1.7969 -2.2373 16 14 4.5104 -3.2971 0.0439 17 1 3.2502 -4.0540 -0.1658 18 1 5.6675 -4.1477 -0.3343 19 1 4.6250 -2.9128 1.4737 20 6 5.4038 1.0959 -1.6466 21 6 5.3721 2.4707 -2.3242 22 6 4.9128 3.5067 -1.2991 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 0.2330 4.3512 1.7390 29 1 1.3673 5.5086 1.2962 30 1 5.3458 -2.6241 -2.5885 31 1 5.8861 0.3738 -2.3054 32 1 5.9560 1.1622 -0.7092 33 1 4.6747 2.4502 -3.1617 34 1 6.3699 2.7261 -2.6811 35 1 4.7377 4.4578 -1.8017 36 1 5.6912 3.6346 -0.5469 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261071885.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:30 Heat of formation + Delta-G solvation = 32.655885 kcal Electronic energy + Delta-G solvation = -18556.175529 eV Core-core repulsion = 15846.485815 eV Total energy + Delta-G solvation = -2709.689714 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.57159 -36.72739 -35.13184 -33.61806 -32.16500 -30.95764 -30.02370 -28.07825 -25.25912 -24.35489 -22.49058 -21.66368 -20.38543 -19.03535 -17.34540 -16.62386 -16.15738 -15.26433 -14.85518 -14.56608 -13.97413 -13.60650 -13.47471 -13.15540 -12.75363 -12.51963 -12.22147 -11.59853 -11.46746 -11.28843 -11.01825 -10.86249 -10.71698 -10.50581 -10.37590 -9.90448 -9.81334 -9.74211 -9.42965 -9.13836 -8.86651 -8.47301 -8.21749 -7.30803 -6.06589 -4.07738 1.88833 2.08980 3.26852 3.34998 3.38106 3.68668 4.38046 4.62080 4.79934 5.20084 5.24032 5.54195 5.73843 5.77868 5.88381 5.98040 6.11077 6.13036 6.31830 6.38307 6.41938 6.52343 6.62527 6.70499 6.75345 6.81666 7.00678 7.14664 7.26863 7.39005 7.59328 7.65230 7.73800 7.83981 7.92105 8.11665 8.32200 8.88766 9.07884 9.51719 11.00318 Molecular weight = 247.14amu Principal moments of inertia in cm(-1) A = 0.021415 B = 0.009642 C = 0.007178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.175060 B = 2903.197896 C = 3899.833267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.069 4.069 3 C 0.225 3.775 4 N -0.575 5.575 5 C 0.539 3.461 6 N -0.837 5.837 7 N -0.587 5.587 8 C 0.195 3.805 9 C -0.187 4.187 10 C 0.093 3.907 11 H 0.046 0.954 12 C -0.512 4.512 13 H 0.064 0.936 14 C 0.065 3.935 15 N -0.887 5.887 16 Si 0.885 3.115 17 H -0.279 1.279 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.104 4.104 21 C -0.123 4.123 22 C -0.061 4.061 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.043 0.957 26 H 0.084 0.916 27 H 0.121 0.879 28 H 0.406 0.594 29 H 0.406 0.594 30 H 0.261 0.739 31 H 0.085 0.915 32 H 0.042 0.958 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.969 7.268 2.397 8.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C 0.077 3.923 4 N -0.299 5.299 5 C 0.179 3.821 6 N -0.388 5.388 7 N -0.311 5.311 8 C 0.052 3.948 9 C -0.193 4.193 10 C 0.074 3.926 11 H 0.063 0.937 12 C -0.550 4.550 13 H 0.082 0.918 14 C -0.137 4.137 15 N -0.525 5.525 16 Si 0.712 3.288 17 H -0.205 1.205 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.142 4.142 21 C -0.161 4.161 22 C -0.099 4.099 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.102 0.898 27 H 0.139 0.861 28 H 0.236 0.764 29 H 0.235 0.765 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.370 7.803 2.712 9.346 hybrid contribution 0.310 -1.043 0.471 1.185 sum -4.060 6.760 3.183 8.504 Atomic orbital electron populations 1.21740 0.96587 1.00284 1.01484 1.21034 0.93789 0.89875 1.05914 1.21511 0.88913 0.94749 0.87086 1.67593 1.36609 1.00079 1.25596 1.19112 0.87061 0.86289 0.89598 1.41457 1.27819 1.08696 1.60814 1.67646 1.08066 1.38996 1.16410 1.20972 0.94112 0.88694 0.91050 1.21450 0.98206 0.96329 1.03315 1.17529 0.90882 0.89204 0.95011 0.93667 1.21301 1.40037 0.93399 1.00252 0.91787 1.24890 0.95236 0.98636 0.94930 1.69902 1.40361 1.27157 1.15080 0.86693 0.77763 0.83388 0.80910 1.20467 1.21256 1.19916 1.21605 0.99751 0.93340 0.99513 1.21709 0.99905 0.96977 0.97468 1.20299 0.92469 0.99065 0.98084 0.93292 0.92660 0.93807 0.89771 0.86141 0.76410 0.76483 0.92878 0.89615 0.93881 0.92408 0.92478 0.90964 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.52 37.16 0.35 -2.07 16 2 C -0.07 -1.37 4.40 -27.88 -0.12 -1.49 16 3 C 0.22 4.80 6.21 -82.17 -0.51 4.29 16 4 N -0.58 -11.61 9.45 -10.12 -0.10 -11.71 16 5 C 0.54 10.27 8.68 -323.04 -2.80 7.47 16 6 N -0.84 -11.71 9.07 29.73 0.27 -11.44 16 7 N -0.59 -11.72 10.34 -10.34 -0.11 -11.83 16 8 C 0.19 4.01 6.62 -82.43 -0.55 3.47 16 9 C -0.19 -4.12 5.39 -104.64 -0.56 -4.68 16 10 C 0.09 2.18 1.56 -93.17 -0.15 2.03 16 11 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 12 C -0.51 -12.72 5.51 -34.44 -0.19 -12.91 16 13 H 0.06 1.60 5.22 -52.48 -0.27 1.32 16 14 C 0.07 1.66 5.33 -17.82 -0.09 1.56 16 15 N -0.89 -23.52 11.82 55.43 0.66 -22.86 16 16 Si 0.88 20.05 29.54 -169.99 -5.02 15.03 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 18 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 20 C -0.10 -2.28 4.96 -26.66 -0.13 -2.42 16 21 C -0.12 -2.22 5.97 -26.67 -0.16 -2.38 16 22 C -0.06 -1.08 5.95 -28.10 -0.17 -1.25 16 23 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 24 H 0.05 0.92 7.78 -51.93 -0.40 0.51 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 1.70 6.82 -51.93 -0.35 1.35 16 27 H 0.12 2.62 5.73 -51.93 -0.30 2.32 16 28 H 0.41 4.82 8.94 -40.82 -0.37 4.45 16 29 H 0.41 4.77 8.94 -40.82 -0.37 4.40 16 30 H 0.26 6.69 8.31 -40.82 -0.34 6.36 16 31 H 0.09 2.06 6.74 -51.93 -0.35 1.71 16 32 H 0.04 0.96 8.09 -51.93 -0.42 0.54 16 33 H 0.06 1.05 8.10 -51.93 -0.42 0.63 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 285.17 15.07 4.30 4.30 Total: -1.00 -27.67 285.17 -10.00 -37.67 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -4.92 Total: 9.21 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -5.08 Total: -8.37 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: 0.72 Total: -57.84 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.67 -10.00 -37.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261071885.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.327 kcal (2) G-P(sol) polarization free energy of solvation -27.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds