Wall clock time and date at job start Mon Mar 30 2020 03:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99831 * 2 1 4 4 H 1.48503 * 109.47147 * 269.99784 * 3 2 1 5 5 H 1.48502 * 109.47125 * 29.99983 * 3 2 1 6 6 H 1.48502 * 109.46946 * 149.99916 * 3 2 1 7 7 C 1.37873 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00118 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99480 * 180.02562 * 7 2 1 10 10 C 1.50703 * 109.46730 * 180.02562 * 9 7 2 11 11 N 1.31783 * 119.16953 * 89.99844 * 10 9 7 12 12 C 1.32772 * 120.50432 * 179.20986 * 11 10 9 13 13 N 1.38539 * 120.40161 * 179.97438 * 12 11 10 14 14 C 1.40244 * 119.19196 * 0.02562 * 12 11 10 15 15 C 1.37029 * 118.26274 * 1.33450 * 14 12 11 16 16 N 1.31543 * 119.17093 * 270.02207 * 10 9 7 17 17 C 1.50438 * 122.72762 * 177.75226 * 15 14 12 18 18 C 1.53207 * 110.86897 * 50.73543 * 17 15 14 19 19 C 1.52574 * 107.81891 * 266.97873 * 18 17 15 20 20 C 1.52985 * 109.82190 * 33.06791 * 19 18 17 21 21 C 1.50561 * 117.98846 * 182.08648 * 14 12 11 22 22 H 0.97000 * 119.99985 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47182 * 60.00042 * 9 7 2 24 24 H 1.08999 * 109.46882 * 299.99829 * 9 7 2 25 25 H 0.97000 * 119.99519 * 180.02562 * 13 12 11 26 26 H 0.97000 * 120.00676 * 0.02562 * 13 12 11 27 27 H 1.09005 * 109.20135 * 290.37266 * 17 15 14 28 28 H 1.09004 * 109.19688 * 171.09307 * 17 15 14 29 29 H 1.09006 * 109.78783 * 147.40780 * 18 17 15 30 30 H 1.08993 * 109.79708 * 26.56167 * 18 17 15 31 31 H 1.09000 * 109.41904 * 272.95813 * 19 18 17 32 32 H 1.08998 * 109.35710 * 153.13442 * 19 18 17 33 33 H 1.09002 * 109.68606 * 180.51699 * 20 19 18 34 34 H 1.08999 * 109.68330 * 301.03655 * 20 19 18 35 35 H 1.08997 * 109.06413 * 88.43018 * 21 14 12 36 36 H 1.08997 * 109.11405 * 329.40509 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0139 -2.6148 0.0010 11 7 4.2284 -3.2201 -1.1498 12 6 4.6857 -4.4662 -1.1808 13 7 4.9100 -5.1007 -2.3918 14 6 4.9379 -5.1326 0.0271 15 6 4.6734 -4.4738 1.1991 16 7 4.2268 -3.2197 1.1495 17 6 4.8596 -5.1099 2.5496 18 6 6.2522 -5.7369 2.6703 19 6 6.1416 -7.2024 2.2603 20 6 5.0773 -7.3577 1.1723 21 6 5.5011 -6.5273 -0.0396 22 1 -0.4850 0.8400 -0.0004 23 1 3.8745 -0.6799 0.8911 24 1 3.8752 -0.6803 -0.8889 25 1 5.2438 -6.0113 -2.4076 26 1 4.7332 -4.6345 -3.2238 27 1 4.1047 -5.8839 2.6885 28 1 4.7400 -4.3509 3.3228 29 1 6.6002 -5.6674 3.7009 30 1 6.9482 -5.2203 2.0094 31 1 5.8633 -7.8013 3.1274 32 1 7.1033 -7.5441 1.8776 33 1 4.9937 -8.4065 0.8876 34 1 4.1171 -7.0006 1.5444 35 1 6.5892 -6.4708 -0.0705 36 1 5.1442 -7.0133 -0.9476 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261337513.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:06 Heat of formation + Delta-G solvation = 9.541832 kcal Electronic energy + Delta-G solvation = -17923.754781 eV Core-core repulsion = 15213.062766 eV Total energy + Delta-G solvation = -2710.692015 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.21205 -38.68286 -36.99972 -35.24893 -33.71755 -32.46148 -32.07973 -30.33106 -26.93725 -26.30838 -24.39643 -23.27750 -21.84023 -20.53628 -19.27915 -19.07429 -17.98467 -16.78160 -16.58223 -16.33432 -16.01087 -15.34624 -15.29112 -14.87244 -14.37019 -14.18860 -13.97391 -13.77152 -13.43718 -12.92632 -12.86880 -12.57737 -12.45453 -12.13745 -11.95187 -11.74358 -11.60144 -11.46111 -11.24826 -11.10924 -10.80707 -10.34107 -9.99947 -9.09657 -8.32415 -6.38427 0.19371 0.54430 1.37109 1.40241 1.52639 2.35428 2.44381 2.96657 3.01372 3.27797 3.46022 3.81471 3.94837 3.99924 4.08357 4.30607 4.33393 4.47158 4.55084 4.66001 4.77687 4.90871 4.96533 5.02174 5.07588 5.12498 5.20938 5.28177 5.35971 5.44079 5.45307 5.53535 5.65874 6.07182 6.19270 6.26718 6.61183 6.90228 7.22668 7.57275 8.84824 Molecular weight = 247.14amu Principal moments of inertia in cm(-1) A = 0.031776 B = 0.005969 C = 0.005478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.949302 B = 4689.427069 C = 5109.794500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.012 3.988 3 Si 0.957 3.043 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.247 1.247 7 C -0.514 4.514 8 H 0.015 0.985 9 C 0.055 3.945 10 C 0.373 3.627 11 N -0.606 5.606 12 C 0.418 3.582 13 N -0.819 5.819 14 C -0.257 4.257 15 C 0.181 3.819 16 N -0.588 5.588 17 C -0.074 4.074 18 C -0.106 4.106 19 C -0.114 4.114 20 C -0.125 4.125 21 C -0.052 4.052 22 H 0.271 0.729 23 H 0.046 0.954 24 H 0.044 0.956 25 H 0.423 0.577 26 H 0.410 0.590 27 H 0.101 0.899 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.087 0.913 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.409 -16.630 1.097 23.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.170 1.170 7 C -0.552 4.552 8 H 0.033 0.967 9 C 0.016 3.984 10 C 0.105 3.895 11 N -0.332 5.332 12 C 0.170 3.830 13 N -0.367 5.367 14 C -0.267 4.267 15 C 0.041 3.959 16 N -0.307 5.307 17 C -0.112 4.112 18 C -0.144 4.144 19 C -0.152 4.152 20 C -0.162 4.162 21 C -0.091 4.091 22 H 0.080 0.920 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.259 0.741 26 H 0.240 0.760 27 H 0.119 0.881 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 15.938 -15.645 1.132 22.362 hybrid contribution -0.265 0.160 -0.597 0.672 sum 15.673 -15.485 0.535 22.039 Atomic orbital electron populations 1.70045 1.08293 1.28544 1.51840 1.25936 0.95734 1.03390 0.93450 0.85567 0.79442 0.77509 0.79614 1.18544 1.20085 1.17015 1.20742 0.89754 0.92946 1.51794 0.96661 1.18368 0.94924 0.86819 0.98257 1.22867 0.87012 0.96980 0.82643 1.67740 1.22681 1.10883 1.31888 1.19034 0.87430 0.88020 0.88559 1.42082 1.72839 1.18096 1.03701 1.20754 1.12866 1.01453 0.91603 1.21628 0.88984 0.88540 0.96754 1.68352 1.20021 1.12003 1.30338 1.20757 1.00505 0.99839 0.90105 1.21528 0.93697 0.96599 1.02548 1.21623 0.99555 0.95073 0.98912 1.21770 0.99174 1.00279 0.94989 1.20281 1.00665 0.87982 1.00138 0.92049 0.93572 0.93808 0.74145 0.75991 0.88086 0.91239 0.89393 0.92814 0.90346 0.90157 0.89126 0.92620 0.89495 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.75 13.96 21.45 0.30 -61.45 16 2 C 0.01 0.75 5.47 84.65 0.46 1.21 16 3 Si 0.96 45.96 27.47 68.60 1.88 47.84 16 4 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 7 C -0.51 -32.54 9.65 25.60 0.25 -32.30 16 8 H 0.01 1.08 7.98 -2.91 -0.02 1.06 16 9 C 0.06 3.00 4.48 29.10 0.13 3.14 16 10 C 0.37 18.85 6.83 138.83 0.95 19.80 16 11 N -0.61 -27.84 10.38 -185.23 -1.92 -29.76 16 12 C 0.42 14.74 7.78 133.38 1.04 15.78 16 13 N -0.82 -19.42 8.94 -54.81 -0.49 -19.91 16 14 C -0.26 -8.01 5.52 -19.70 -0.11 -8.12 16 15 C 0.18 6.58 6.01 41.98 0.25 6.83 16 16 N -0.59 -27.58 10.16 -177.04 -1.80 -29.38 16 17 C -0.07 -2.01 5.31 29.83 0.16 -1.85 16 18 C -0.11 -1.99 5.76 30.52 0.18 -1.81 16 19 C -0.11 -1.54 5.62 30.45 0.17 -1.36 16 20 C -0.12 -1.99 5.62 30.55 0.17 -1.82 16 21 C -0.05 -0.99 4.88 29.77 0.15 -0.84 16 22 H 0.27 16.22 8.31 -92.71 -0.77 15.45 16 23 H 0.05 2.45 7.20 -2.39 -0.02 2.43 16 24 H 0.04 2.28 7.57 -2.39 -0.02 2.26 16 25 H 0.42 6.52 6.64 -92.71 -0.62 5.91 16 26 H 0.41 9.24 8.95 -92.71 -0.83 8.41 16 27 H 0.10 2.46 5.80 -2.38 -0.01 2.45 16 28 H 0.07 2.05 8.08 -2.38 -0.02 2.03 16 29 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.05 1.14 7.80 -2.39 -0.02 1.12 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.08 0.84 8.05 -2.39 -0.02 0.82 16 33 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 1.14 5.41 -2.39 -0.01 1.13 16 35 H 0.09 1.39 7.70 -2.39 -0.02 1.37 16 36 H 0.08 1.20 6.31 -2.39 -0.02 1.18 16 Total: -1.00 -80.23 284.83 1.38 -78.85 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -0.39 Total: 15.16 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: 3.79 Total: -1.35 kcal Atomic # 7 Polarization: -136.59 SS G_CDS: -3.91 Total: -140.50 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.88 Total: 47.84 kcal Total: -80.23 1.38 -78.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261337513.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.394 kcal (2) G-P(sol) polarization free energy of solvation -80.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds