Wall clock time and date at job start Mon Mar 30 2020 04:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46494 * 109.46886 * 150.58717 * 3 2 1 5 5 C 1.36881 * 126.40087 * 264.68953 * 4 3 2 6 6 C 1.34671 * 106.82080 * 179.84137 * 5 4 3 7 7 N 1.34124 * 108.02044 * 0.42548 * 6 5 4 8 8 C 1.30504 * 109.25633 * 359.72787 * 7 6 5 9 9 C 1.50704 * 125.65216 * 179.97438 * 8 7 6 10 10 N 1.46900 * 109.47142 * 270.04267 * 9 8 7 11 11 C 1.46897 * 111.00106 * 175.55208 * 10 9 8 12 12 H 1.09003 * 109.46779 * 33.80010 * 11 10 9 13 13 C 1.50692 * 109.47129 * 273.80253 * 11 10 9 14 14 H 1.07998 * 120.00257 * 359.97438 * 13 11 10 15 15 C 1.37877 * 120.00237 * 179.97438 * 13 11 10 16 16 N 1.31515 * 119.99693 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 120.00341 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47286 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47056 * 120.00367 * 17 15 13 20 20 H 1.48496 * 109.47504 * 240.00009 * 17 15 13 21 21 C 1.52997 * 109.47306 * 153.79870 * 11 10 9 22 22 C 1.52999 * 109.47127 * 294.84569 * 21 11 10 23 23 H 4.40644 * 5.51348 * 180.02562 * 4 1 2 24 24 H 1.08997 * 109.47222 * 270.58856 * 3 2 1 25 25 H 1.09001 * 109.47160 * 30.58753 * 3 2 1 26 26 H 1.08001 * 126.58823 * 359.97438 * 5 4 3 27 27 H 1.07994 * 125.99250 * 180.11269 * 6 5 4 28 28 H 1.09001 * 109.47059 * 30.04303 * 9 8 7 29 29 H 1.09000 * 109.46806 * 150.04092 * 9 8 7 30 30 H 1.00906 * 110.99857 * 299.50829 * 10 9 8 31 31 H 0.97001 * 120.00140 * 179.97438 * 16 15 13 32 32 H 1.09006 * 109.46897 * 54.83964 * 21 11 10 33 33 H 1.08994 * 109.47500 * 174.84242 * 21 11 10 34 34 H 1.09002 * 109.47164 * 66.21570 * 22 21 11 35 35 H 1.09005 * 109.47123 * 186.21247 * 22 21 11 36 36 H 1.08999 * 109.46993 * 306.21311 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1338 1.2040 -0.6783 5 6 3.5006 1.3030 -1.9933 6 6 3.8802 2.5789 -2.1971 7 7 3.7577 3.2387 -1.0358 8 6 3.3110 2.4216 -0.1215 9 6 3.0388 2.7774 1.3174 10 7 4.2516 2.5528 2.1152 11 6 4.0562 2.9886 3.5044 12 1 3.0217 2.8112 3.7986 13 6 4.3655 4.4591 3.6177 14 1 4.6766 5.0143 2.7452 15 6 4.2513 5.0958 4.8354 16 7 3.8730 4.4196 5.8980 17 14 4.6355 6.9184 4.9760 18 1 5.0368 7.4438 3.6464 19 1 3.4294 7.6432 5.4508 20 1 5.7449 7.1173 5.9428 21 6 4.9904 2.1986 4.4230 22 6 4.5929 0.7212 4.4061 23 1 -1.0502 -0.0003 0.0004 24 1 3.0094 -0.0097 1.0276 25 1 3.0098 -0.8839 -0.5229 26 1 3.4861 0.5106 -2.7271 27 1 4.2277 2.9964 -3.1305 28 1 2.7493 3.8262 1.3838 29 1 2.2315 2.1528 1.6996 30 1 4.5360 1.5854 2.0763 31 1 3.7930 4.8673 6.7547 32 1 6.0175 2.3025 4.0730 33 1 4.9122 2.5843 5.4395 34 1 4.7760 0.3070 3.4147 35 1 5.1849 0.1772 5.1422 36 1 3.5346 0.6269 4.6496 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310017304.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:11 Heat of formation + Delta-G solvation = 118.548701 kcal Electronic energy + Delta-G solvation = -17668.825960 eV Core-core repulsion = 14962.860838 eV Total energy + Delta-G solvation = -2705.965122 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.84748 -36.41525 -35.21966 -32.75622 -32.14767 -31.40428 -29.16132 -27.30769 -26.60496 -24.43364 -22.52578 -21.18346 -20.00059 -19.58977 -18.48426 -16.85469 -16.28865 -15.57984 -14.84464 -14.74798 -14.59716 -13.95151 -13.56061 -13.45399 -13.23583 -12.95122 -12.49240 -12.23562 -11.92666 -11.37547 -11.11905 -10.90494 -10.82323 -10.56498 -10.52857 -9.94305 -9.80499 -9.68959 -9.56532 -9.52626 -9.09236 -8.32806 -8.12822 -7.29687 -5.94621 -3.97839 2.08359 2.30200 2.53708 3.29375 3.36107 3.43966 3.47399 3.52404 4.07312 4.49974 4.71096 4.81340 4.94635 5.09746 5.33719 5.45724 5.60860 5.61907 5.72274 6.04146 6.07561 6.10181 6.33798 6.41655 6.48864 6.77581 6.98596 7.02418 7.12804 7.28858 7.35346 7.45125 7.74566 7.95176 8.21291 8.36447 8.47158 8.70257 9.12153 9.67470 11.11060 Molecular weight = 247.14amu Principal moments of inertia in cm(-1) A = 0.022488 B = 0.006190 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.792018 B = 4522.228804 C = 5086.071736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.219 4.219 3 C 0.220 3.780 4 N -0.460 5.460 5 C -0.070 4.070 6 C -0.028 4.028 7 N -0.475 5.475 8 C 0.239 3.761 9 C 0.149 3.851 10 N -0.674 5.674 11 C 0.220 3.780 12 H 0.004 0.996 13 C -0.491 4.491 14 H 0.066 0.934 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.895 3.105 18 H -0.271 1.271 19 H -0.286 1.286 20 H -0.286 1.286 21 C -0.126 4.126 22 C -0.150 4.150 23 H 0.222 0.778 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.169 0.831 27 H 0.166 0.834 28 H 0.106 0.894 29 H 0.030 0.970 30 H 0.313 0.687 31 H 0.258 0.742 32 H 0.043 0.957 33 H 0.102 0.898 34 H 0.032 0.968 35 H 0.039 0.961 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.123 -11.359 -10.669 16.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.220 4.220 3 C 0.098 3.902 4 N -0.145 5.145 5 C -0.202 4.202 6 C -0.176 4.176 7 N -0.193 5.193 8 C -0.024 4.024 9 C 0.018 3.982 10 N -0.306 5.306 11 C 0.113 3.887 12 H 0.022 0.978 13 C -0.530 4.530 14 H 0.084 0.916 15 C -0.146 4.146 16 N -0.539 5.539 17 Si 0.723 3.277 18 H -0.196 1.196 19 H -0.213 1.213 20 H -0.212 1.212 21 C -0.165 4.165 22 C -0.208 4.208 23 H 0.239 0.761 24 H 0.131 0.869 25 H 0.131 0.869 26 H 0.187 0.813 27 H 0.183 0.817 28 H 0.124 0.876 29 H 0.048 0.952 30 H 0.130 0.870 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.120 0.880 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.692 -10.005 -10.491 14.959 hybrid contribution -0.765 -0.745 0.240 1.094 sum -4.457 -10.749 -10.251 15.508 Atomic orbital electron populations 1.25031 0.95937 0.97615 0.99194 1.23037 0.94448 1.02638 1.01893 1.18496 0.84508 0.87245 0.99991 1.45457 1.49503 1.09961 1.09535 1.22564 1.10707 1.00801 0.86085 1.22302 1.06558 0.91108 0.97621 1.70351 1.17820 1.31703 0.99421 1.23691 1.01034 0.80171 0.97514 1.20215 0.92194 1.03049 0.82770 1.60655 1.31387 1.23614 1.14982 1.19206 0.93976 0.94977 0.80517 0.97846 1.21288 1.43805 0.93199 0.94706 0.91578 1.24951 0.95505 0.98271 0.95826 1.69877 1.48635 1.35626 0.99781 0.86475 0.77745 0.85321 0.78145 1.19570 1.21272 1.21186 1.21782 0.98735 0.91187 1.04753 1.21893 1.00398 0.99503 0.98968 0.76083 0.86926 0.86860 0.81347 0.81665 0.87596 0.95249 0.86972 0.93173 0.93852 0.87997 0.94908 0.94209 0.93857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 19.25 29.55 0.57 -1.12 16 2 C -0.22 -2.63 13.68 -37.12 -0.51 -3.14 16 3 C 0.22 2.47 6.15 -6.83 -0.04 2.43 16 4 N -0.46 -6.68 2.71 -117.02 -0.32 -7.00 16 5 C -0.07 -0.93 11.58 -16.56 -0.19 -1.12 16 6 C -0.03 -0.43 11.87 -17.81 -0.21 -0.65 16 7 N -0.48 -9.34 11.25 -10.81 -0.12 -9.46 16 8 C 0.24 4.37 7.45 -155.40 -1.16 3.21 16 9 C 0.15 2.94 5.60 -4.97 -0.03 2.91 16 10 N -0.67 -14.40 6.26 -109.22 -0.68 -15.09 16 11 C 0.22 5.39 2.03 -68.87 -0.14 5.25 16 12 H 0.00 0.10 7.84 -51.93 -0.41 -0.30 16 13 C -0.49 -13.65 8.61 -34.44 -0.30 -13.94 16 14 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 15 C 0.05 1.51 5.29 -17.82 -0.09 1.42 16 16 N -0.90 -25.43 11.29 55.43 0.63 -24.80 16 17 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 18 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 C -0.13 -2.91 5.35 -26.73 -0.14 -3.05 16 22 C -0.15 -2.77 9.63 37.16 0.36 -2.41 16 23 H 0.22 1.53 7.80 -54.08 -0.42 1.11 16 24 H 0.11 1.25 7.91 -51.93 -0.41 0.83 16 25 H 0.11 0.90 8.13 -51.93 -0.42 0.47 16 26 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 27 H 0.17 2.07 8.06 -52.49 -0.42 1.64 16 28 H 0.11 2.34 7.97 -51.93 -0.41 1.93 16 29 H 0.03 0.54 7.82 -51.93 -0.41 0.14 16 30 H 0.31 5.99 6.61 -39.29 -0.26 5.73 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 34 H 0.03 0.53 6.65 -51.93 -0.35 0.18 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 312.22 15.07 4.71 4.71 Total: -1.00 -31.98 312.22 -7.75 -39.73 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -5.05 Total: 5.30 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -1.89 Total: -10.20 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: -0.50 Total: -56.35 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.98 -7.75 -39.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310017304.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.282 kcal (2) G-P(sol) polarization free energy of solvation -31.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds