Wall clock time and date at job start Mon Mar 30 2020 04:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.47202 * 110.78391 * 2 1 4 4 N 2.60808 * 110.78365 * 359.97438 * 2 1 3 5 5 C 1.54600 * 110.72018 * 123.24121 * 2 1 3 6 6 C 1.53992 * 105.13622 * 140.31905 * 5 2 1 7 7 N 1.47905 * 107.06200 * 1.22899 * 6 5 2 8 8 C 1.46896 * 111.00064 * 214.15842 * 7 6 5 9 9 C 1.52998 * 109.47259 * 175.72436 * 8 7 6 10 10 H 1.09002 * 109.46942 * 303.77804 * 9 8 7 11 11 C 1.47196 * 109.47497 * 63.77401 * 9 8 7 12 12 N 5.35215 * 140.62004 * 269.34642 * 2 1 3 13 13 C 1.52994 * 109.47415 * 183.78086 * 9 8 7 14 14 C 1.50702 * 109.47479 * 174.99839 * 13 9 8 15 15 H 1.08001 * 119.99826 * 359.97438 * 14 13 9 16 16 C 1.37880 * 120.00192 * 179.97438 * 14 13 9 17 17 N 1.31516 * 120.00053 * 359.97438 * 16 14 13 18 18 Si 1.86788 * 119.99974 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47267 * 89.99854 * 18 16 14 20 20 H 1.48500 * 109.47514 * 209.99801 * 18 16 14 21 21 H 1.48500 * 109.47565 * 330.00082 * 18 16 14 22 22 C 1.48534 * 105.81594 * 334.66646 * 7 6 5 23 23 H 1.08992 * 109.47505 * 298.21382 * 1 2 3 24 24 H 1.09010 * 109.46479 * 58.21226 * 1 2 3 25 25 H 1.08996 * 109.46788 * 178.20071 * 1 2 3 26 26 H 1.08996 * 110.30731 * 21.40364 * 5 2 1 27 27 H 1.09000 * 110.39353 * 259.27726 * 5 2 1 28 28 H 1.09001 * 109.91909 * 241.87276 * 6 5 2 29 29 H 1.09008 * 110.08405 * 120.67109 * 6 5 2 30 30 H 1.08996 * 109.47467 * 55.72030 * 8 7 6 31 31 H 1.08997 * 109.46858 * 295.71868 * 8 7 6 32 32 H 1.09005 * 109.47322 * 294.99754 * 13 9 8 33 33 H 1.09003 * 109.47370 * 54.99645 * 13 9 8 34 34 H 0.96990 * 120.00530 * 179.97438 * 17 16 14 35 35 H 1.09001 * 110.66651 * 157.64172 * 22 7 6 36 36 H 1.08997 * 110.67242 * 280.77348 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0524 1.3762 0.0000 4 7 2.4555 2.4384 -0.0011 5 6 2.0770 -0.7927 1.2094 6 6 3.2893 -1.5708 0.6651 7 7 3.4320 -1.2092 -0.7619 8 6 3.9213 -2.3498 -1.5477 9 6 3.9545 -1.9714 -3.0297 10 1 2.9636 -1.6429 -3.3431 11 6 4.9210 -0.8806 -3.2362 12 7 5.6670 -0.0387 -3.3955 13 6 4.3739 -3.1879 -3.8574 14 6 4.2883 -2.8515 -5.3239 15 1 3.9664 -1.8685 -5.6345 16 6 4.6208 -3.7987 -6.2691 17 7 5.0132 -4.9956 -5.8909 18 14 4.5139 -3.3819 -8.0868 19 1 5.8136 -2.8286 -8.5451 20 1 4.1993 -4.6109 -8.8588 21 1 3.4439 -2.3749 -8.3017 22 6 2.0784 -0.7946 -1.2118 23 1 -0.3634 0.4858 0.9055 24 1 -0.3633 0.5414 -0.8736 25 1 -0.3633 -1.0271 -0.0323 26 1 1.3207 -1.4832 1.5824 27 1 2.3892 -0.1109 2.0005 28 1 3.1161 -2.6426 0.7611 29 1 4.1901 -1.2901 1.2111 30 1 3.2563 -3.2014 -1.4049 31 1 4.9260 -2.6139 -1.2176 32 1 5.3987 -3.4621 -3.6069 33 1 3.7100 -4.0238 -3.6370 34 1 5.2467 -5.6621 -6.5557 35 1 2.1446 -0.1558 -2.0925 36 1 1.4562 -1.6664 -1.4135 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595832792.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:51 Heat of formation + Delta-G solvation = 22.151953 kcal Electronic energy + Delta-G solvation = -17478.667572 eV Core-core repulsion = 14768.522374 eV Total energy + Delta-G solvation = -2710.145199 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.73950 -38.30986 -37.07691 -35.68283 -34.65655 -32.91862 -30.51077 -28.43001 -27.04828 -24.66114 -23.68828 -22.93807 -21.87880 -18.55231 -18.51869 -17.87881 -16.67315 -16.38541 -16.03939 -15.22814 -15.00778 -14.94621 -14.70075 -14.38065 -14.20767 -13.88321 -13.78215 -13.59057 -13.48558 -13.13144 -13.02212 -12.82653 -12.69707 -12.53728 -12.43455 -12.27754 -11.91044 -11.76193 -11.75195 -11.58596 -11.33241 -11.09262 -10.53782 -9.24013 -8.18218 -6.25638 1.40001 1.43335 1.51507 1.76385 1.83317 2.04925 2.12297 2.42459 2.92814 3.05582 3.17817 3.36692 3.60113 3.70630 4.03630 4.25266 4.35834 4.41393 4.54053 4.73499 4.74609 4.84152 4.87625 4.92480 5.01777 5.08620 5.08988 5.17557 5.27778 5.41779 5.49482 5.65038 5.80933 6.01328 6.08358 6.24718 6.62815 6.84151 6.93074 7.42800 8.92513 Molecular weight = 247.14amu Principal moments of inertia in cm(-1) A = 0.030086 B = 0.005073 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.439895 B = 5517.922343 C = 5645.366352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 C 0.248 3.752 4 N -0.503 5.503 5 C -0.106 4.106 6 C 0.032 3.968 7 N -0.552 5.552 8 C 0.067 3.933 9 C 0.017 3.983 10 H 0.120 0.880 11 C 0.263 3.737 12 N -0.523 5.523 13 C 0.039 3.961 14 C -0.539 4.539 15 H 0.050 0.950 16 C 0.015 3.985 17 N -0.921 5.921 18 Si 0.943 3.057 19 H -0.288 1.288 20 H -0.277 1.277 21 H -0.265 1.265 22 C 0.040 3.960 23 H 0.076 0.924 24 H 0.062 0.938 25 H 0.109 0.891 26 H 0.128 0.872 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.074 0.926 32 H -0.001 1.001 33 H 0.044 0.956 34 H 0.264 0.736 35 H 0.067 0.933 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.428 0.605 15.384 20.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.025 3.975 3 C -0.069 4.069 4 N -0.179 5.179 5 C -0.145 4.145 6 C -0.095 4.095 7 N -0.277 5.277 8 C -0.062 4.062 9 C -0.005 4.005 10 H 0.137 0.863 11 C -0.053 4.053 12 N -0.200 5.200 13 C 0.000 4.000 14 C -0.577 4.577 15 H 0.069 0.931 16 C -0.184 4.184 17 N -0.561 5.561 18 Si 0.769 3.231 19 H -0.214 1.214 20 H -0.202 1.202 21 H -0.189 1.189 22 C -0.088 4.088 23 H 0.095 0.905 24 H 0.081 0.919 25 H 0.127 0.873 26 H 0.146 0.854 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.018 0.982 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.247 3.745 15.013 19.129 hybrid contribution -0.146 -0.896 -1.301 1.586 sum -11.393 2.849 13.712 18.054 Atomic orbital electron populations 1.21860 0.87834 1.05723 1.03560 1.19402 0.98002 0.81481 0.98587 1.29569 0.91397 0.94679 0.91259 1.81208 1.11012 1.15134 1.10504 1.22607 0.98012 0.98760 0.95123 1.22965 0.98791 1.00298 0.87476 1.64771 1.24255 1.34830 1.03829 1.22266 1.02249 0.92429 0.89256 1.19333 0.94777 0.89287 0.97068 0.86264 1.29580 0.93106 0.92813 0.89758 1.80997 1.12730 1.14069 1.12225 1.18997 0.96542 0.91861 0.92584 1.21546 1.44967 0.98227 0.92961 0.93136 1.25637 0.94957 0.95041 1.02783 1.70009 1.46058 1.04861 1.35163 0.85774 0.78246 0.78020 0.81013 1.21425 1.20168 1.18911 1.23507 0.89599 0.99751 0.95959 0.90510 0.91893 0.87251 0.85395 0.90724 0.90311 0.91343 0.89265 0.90729 0.98210 0.93801 0.92704 0.91462 0.87562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 8.47 71.98 0.61 -0.45 16 2 C 0.03 0.44 0.89 -52.78 -0.05 0.39 16 3 C 0.25 6.18 13.83 89.44 1.24 7.41 16 4 N -0.50 -16.39 18.54 20.01 0.37 -16.02 16 5 C -0.11 -1.14 6.05 31.47 0.19 -0.95 16 6 C 0.03 0.49 6.70 86.44 0.58 1.07 16 7 N -0.55 -12.49 4.97 -883.03 -4.39 -16.87 16 8 C 0.07 1.68 4.21 86.30 0.36 2.04 16 9 C 0.02 0.58 2.01 -12.60 -0.03 0.56 16 10 H 0.12 3.64 6.70 -2.39 -0.02 3.63 16 11 C 0.26 11.13 13.64 89.44 1.22 12.35 16 12 N -0.52 -24.84 18.54 20.00 0.37 -24.47 16 13 C 0.04 1.72 4.42 29.85 0.13 1.85 16 14 C -0.54 -28.01 8.60 25.60 0.22 -27.79 16 15 H 0.05 2.63 7.59 -2.91 -0.02 2.61 16 16 C 0.02 0.81 5.46 84.66 0.46 1.27 16 17 N -0.92 -51.77 13.29 21.45 0.28 -51.49 16 18 Si 0.94 43.00 29.54 68.60 2.03 45.03 16 19 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 20 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 21 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 22 C 0.04 0.73 4.21 86.65 0.36 1.10 16 23 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 24 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 25 H 0.11 0.31 8.12 -2.39 -0.02 0.29 16 26 H 0.13 0.46 7.85 -2.39 -0.02 0.44 16 27 H 0.07 0.89 7.85 -2.39 -0.02 0.87 16 28 H 0.08 0.88 7.67 -2.39 -0.02 0.86 16 29 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.09 1.73 7.97 -2.39 -0.02 1.71 16 31 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 33 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.26 14.12 8.31 -92.72 -0.77 13.35 16 35 H 0.07 1.54 7.46 -2.39 -0.02 1.52 16 36 H 0.11 1.28 7.91 -2.39 -0.02 1.26 16 Total: -1.00 -72.38 310.95 5.04 -67.34 By element: Atomic # 1 Polarization: -3.46 SS G_CDS: 1.06 Total: -2.39 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 5.31 Total: -1.14 kcal Atomic # 7 Polarization: -105.48 SS G_CDS: -3.36 Total: -108.84 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -72.38 5.04 -67.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595832792.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.492 kcal (2) G-P(sol) polarization free energy of solvation -72.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds