Wall clock time and date at job start Mon Mar 30 2020 04:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32145 * 120.00019 * 2 1 4 4 C 1.32121 * 120.00189 * 180.02562 * 3 2 1 5 5 C 1.38393 * 119.99676 * 359.97438 * 4 3 2 6 6 N 1.32125 * 119.99520 * 359.74540 * 5 4 3 7 7 C 1.32152 * 120.00208 * 0.51277 * 6 5 4 8 8 C 1.50692 * 119.99937 * 179.76478 * 7 6 5 9 9 N 1.46909 * 109.47095 * 95.80547 * 8 7 6 10 10 C 1.48557 * 110.99665 * 283.60592 * 9 8 7 11 11 C 1.54380 * 104.59290 * 200.96132 * 10 9 8 12 12 C 1.54254 * 105.06276 * 23.85516 * 11 10 9 13 13 H 1.09004 * 110.32115 * 241.00283 * 12 11 10 14 14 C 1.50691 * 110.32851 * 118.89859 * 12 11 10 15 15 H 1.08000 * 119.99911 * 245.23988 * 14 12 11 16 16 C 1.37875 * 120.00278 * 65.23461 * 14 12 11 17 17 N 1.31522 * 119.99792 * 6.22751 * 16 14 12 18 18 Si 1.86796 * 120.00150 * 186.22676 * 16 14 12 19 19 H 1.48502 * 109.47517 * 84.99397 * 18 16 14 20 20 H 1.48500 * 109.47472 * 324.98961 * 18 16 14 21 21 H 1.48506 * 109.47039 * 204.99265 * 18 16 14 22 22 C 1.48562 * 111.00160 * 168.18917 * 9 8 7 23 23 H 1.08997 * 109.47627 * 271.55162 * 1 2 3 24 24 H 1.09001 * 109.47600 * 31.55303 * 1 2 3 25 25 H 1.09001 * 109.47079 * 151.54873 * 1 2 3 26 26 H 1.07998 * 120.00315 * 180.02562 * 4 3 2 27 27 H 1.07996 * 120.00098 * 180.02562 * 5 4 3 28 28 H 1.08992 * 109.47515 * 335.80283 * 8 7 6 29 29 H 1.09000 * 109.47550 * 215.80160 * 8 7 6 30 30 H 1.09004 * 110.41255 * 82.18215 * 10 9 8 31 31 H 1.09008 * 110.51566 * 319.78844 * 10 9 8 32 32 H 1.09004 * 110.32249 * 264.95697 * 11 10 9 33 33 H 1.09001 * 110.32400 * 142.75121 * 11 10 9 34 34 H 0.97000 * 119.99700 * 180.02562 * 17 16 14 35 35 H 1.09004 * 110.40827 * 40.25664 * 22 9 8 36 36 H 1.09003 * 110.41104 * 277.82185 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1677 1.1444 0.0000 4 6 3.4889 1.1444 -0.0005 5 6 4.1809 -0.0541 -0.0005 6 7 3.5201 -1.1982 0.0051 7 6 2.1986 -1.1982 0.0004 8 6 1.4451 -2.5032 0.0015 9 7 1.0741 -2.8533 1.3791 10 6 2.2445 -3.3782 2.1286 11 6 1.6308 -4.1785 3.2974 12 6 0.2177 -4.5689 2.8177 13 1 -0.5376 -4.1404 3.4765 14 6 0.0774 -6.0685 2.7680 15 1 -0.0692 -6.5660 1.8207 16 6 0.1365 -6.8054 3.9318 17 7 0.1920 -6.1942 5.0950 18 14 0.1376 -8.6718 3.8564 19 1 1.5250 -9.1580 3.6462 20 1 -0.7206 -9.1224 2.7314 21 1 -0.3906 -9.2191 5.1319 22 6 0.0963 -3.9717 1.3993 23 1 -0.3634 0.0278 1.0272 24 1 -0.3634 0.8757 -0.5378 25 1 -0.3633 -0.9036 -0.4896 26 1 4.0290 2.0797 -0.0001 27 1 5.2608 -0.0541 -0.0005 28 1 2.0766 -3.2877 -0.4153 29 1 0.5437 -2.4028 -0.6031 30 1 2.8524 -2.5568 2.5080 31 1 2.8431 -4.0314 1.4935 32 1 1.5691 -3.5568 4.1907 33 1 2.2231 -5.0715 3.4970 34 1 0.2339 -6.7126 5.9138 35 1 0.3570 -4.7181 0.6489 36 1 -0.9132 -3.5972 1.2295 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687301767.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:41 Heat of formation + Delta-G solvation = 47.374448 kcal Electronic energy + Delta-G solvation = -17779.832502 eV Core-core repulsion = 15070.781033 eV Total energy + Delta-G solvation = -2709.051469 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.138 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.12296 -38.02056 -34.50062 -34.08114 -32.56585 -30.24807 -28.22605 -27.98617 -26.32034 -24.15796 -22.92478 -22.26887 -20.21760 -19.41577 -17.72013 -16.56861 -16.19769 -15.53391 -15.39211 -14.76289 -14.56189 -14.04658 -13.71711 -13.08387 -12.84277 -12.67555 -12.54240 -12.18614 -11.83055 -11.50683 -11.23308 -11.10646 -11.04607 -10.79063 -10.67532 -10.46891 -10.29066 -9.75974 -9.32152 -9.01634 -8.95509 -8.75656 -8.38707 -7.90505 -6.02789 -4.05591 0.82114 1.19403 3.30255 3.37039 3.39072 3.67357 4.06075 4.18851 4.42453 4.52787 4.73615 4.85458 5.12766 5.20084 5.30389 5.38851 5.53104 5.66101 5.77795 5.82992 5.92807 6.07563 6.09224 6.29186 6.36670 6.47134 6.51703 6.82464 7.05723 7.15372 7.34375 7.48341 7.61013 7.64729 7.86018 7.87121 7.99022 8.44645 8.97467 9.58172 11.07018 Molecular weight = 247.14amu Principal moments of inertia in cm(-1) A = 0.045205 B = 0.004917 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.247213 B = 5692.928803 C = 5879.504214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.099 3.901 3 N -0.445 5.445 4 C 0.043 3.957 5 C 0.038 3.962 6 N -0.432 5.432 7 C 0.101 3.899 8 C 0.090 3.910 9 N -0.509 5.509 10 C 0.040 3.960 11 C -0.096 4.096 12 C 0.049 3.951 13 H 0.039 0.961 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.064 3.936 17 N -0.886 5.886 18 Si 0.888 3.112 19 H -0.280 1.280 20 H -0.275 1.275 21 H -0.287 1.287 22 C 0.041 3.959 23 H 0.090 0.910 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.165 0.835 27 H 0.165 0.835 28 H 0.055 0.945 29 H 0.091 0.909 30 H 0.055 0.945 31 H 0.037 0.963 32 H 0.044 0.956 33 H 0.063 0.937 34 H 0.260 0.740 35 H 0.038 0.962 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.448 11.606 -10.116 16.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.042 4.042 3 N -0.160 5.160 4 C -0.117 4.117 5 C -0.121 4.121 6 N -0.147 5.147 7 C -0.040 4.040 8 C -0.039 4.039 9 N -0.234 5.234 10 C -0.088 4.088 11 C -0.135 4.135 12 C 0.030 3.970 13 H 0.057 0.943 14 C -0.556 4.556 15 H 0.073 0.927 16 C -0.138 4.138 17 N -0.524 5.524 18 Si 0.716 3.284 19 H -0.206 1.206 20 H -0.200 1.200 21 H -0.213 1.213 22 C -0.086 4.086 23 H 0.108 0.892 24 H 0.091 0.909 25 H 0.100 0.900 26 H 0.182 0.818 27 H 0.182 0.818 28 H 0.073 0.927 29 H 0.109 0.891 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.234 12.051 -9.679 16.026 hybrid contribution 0.722 -1.635 -0.284 1.810 sum 4.956 10.416 -9.962 15.242 Atomic orbital electron populations 1.20720 0.87547 1.03134 1.04168 1.22085 0.98567 0.88702 0.94821 1.68276 1.08893 1.29371 1.09510 1.23666 0.90941 0.99653 0.97481 1.23685 1.01689 0.88886 0.97872 1.68283 1.08525 1.29803 1.08063 1.22040 0.90144 0.96605 0.95231 1.21095 0.97921 0.91506 0.93427 1.65404 1.10992 1.37573 1.09384 1.23134 0.92099 0.96933 0.96635 1.22290 0.99047 0.97591 0.94594 1.19357 0.93273 0.94963 0.89387 0.94323 1.21167 1.50233 0.91198 0.92986 0.92682 1.24960 0.95085 0.98266 0.95475 1.69989 1.49860 1.35300 0.97251 0.86677 0.78283 0.86078 0.77357 1.20646 1.19966 1.21298 1.23327 0.94246 0.90020 1.00988 0.89182 0.90926 0.90037 0.81763 0.81758 0.92718 0.89104 0.92660 0.94515 0.93717 0.91846 0.92990 0.94409 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.16 9.82 36.01 0.35 -0.81 16 2 C 0.10 1.41 6.78 -82.42 -0.56 0.85 16 3 N -0.44 -6.19 10.42 -9.29 -0.10 -6.28 16 4 C 0.04 0.49 11.23 -17.37 -0.19 0.29 16 5 C 0.04 0.46 11.23 -17.37 -0.19 0.26 16 6 N -0.43 -6.57 10.42 -9.29 -0.10 -6.67 16 7 C 0.10 1.55 6.01 -82.42 -0.50 1.05 16 8 C 0.09 1.40 4.60 -4.98 -0.02 1.38 16 9 N -0.51 -9.45 5.31 -231.40 -1.23 -10.68 16 10 C 0.04 0.80 6.17 -2.18 -0.01 0.79 16 11 C -0.10 -2.28 6.06 -25.35 -0.15 -2.43 16 12 C 0.05 1.22 2.88 -90.40 -0.26 0.96 16 13 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 14 C -0.52 -13.95 8.31 -34.45 -0.29 -14.23 16 15 H 0.05 1.46 7.56 -52.49 -0.40 1.06 16 16 C 0.06 1.77 5.12 -17.82 -0.09 1.68 16 17 N -0.89 -25.44 12.88 55.43 0.71 -24.73 16 18 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 22 C 0.04 0.83 5.97 -2.18 -0.01 0.82 16 23 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.08 0.88 5.99 -51.93 -0.31 0.57 16 26 H 0.17 1.25 8.06 -52.49 -0.42 0.82 16 27 H 0.17 1.38 8.06 -52.49 -0.42 0.95 16 28 H 0.05 0.89 7.73 -51.93 -0.40 0.49 16 29 H 0.09 1.21 6.12 -51.93 -0.32 0.89 16 30 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.04 0.74 7.73 -51.92 -0.40 0.34 16 32 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 1.62 7.52 -51.93 -0.39 1.23 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 35 H 0.04 0.77 7.54 -51.93 -0.39 0.37 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 297.54 15.07 4.48 4.48 Total: -1.00 -30.21 297.54 -8.31 -38.52 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -5.13 Total: -1.31 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -1.93 Total: -9.39 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: -0.71 Total: -48.36 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.21 -8.31 -38.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687301767.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.890 kcal (2) G-P(sol) polarization free energy of solvation -30.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds