Wall clock time and date at job start Mon Mar 30 2020 03:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 H 1.07996 * 119.99751 * 120.00006 * 4 2 1 6 6 C 1.37877 * 120.00001 * 300.00469 * 4 2 1 7 7 N 1.31517 * 120.00094 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99955 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47171 * 89.99544 * 8 6 4 10 10 H 1.48500 * 109.46632 * 209.99795 * 8 6 4 11 11 H 1.48494 * 109.47053 * 329.99231 * 8 6 4 12 12 S 1.81401 * 109.47457 * 239.99872 * 2 1 3 13 13 O 1.42093 * 108.58081 * 174.48955 * 12 2 1 14 14 O 1.42099 * 108.57650 * 305.51735 * 12 2 1 15 15 C 1.81406 * 101.92055 * 59.99847 * 12 2 1 16 16 C 1.52997 * 109.47164 * 179.97438 * 15 12 2 17 17 H 1.09004 * 109.82672 * 305.70791 * 16 15 12 18 18 C 1.54382 * 109.83119 * 184.81755 * 16 15 12 19 19 C 1.55446 * 102.18486 * 219.18310 * 18 16 15 20 20 C 1.54945 * 100.99027 * 34.03637 * 19 18 16 21 21 O 1.43239 * 109.82907 * 66.58810 * 16 15 12 22 22 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 23 23 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 0.97000 * 120.00333 * 179.97438 * 7 6 4 26 26 H 1.08991 * 109.47334 * 300.00247 * 15 12 2 27 27 H 1.09006 * 109.46416 * 60.00412 * 15 12 2 28 28 H 1.08998 * 110.84476 * 337.32498 * 18 16 15 29 29 H 1.08998 * 110.84483 * 100.94246 * 18 16 15 30 30 H 1.09009 * 111.05891 * 276.12246 * 19 18 16 31 31 H 1.08997 * 111.18532 * 152.01010 * 19 18 16 32 32 H 1.09002 * 110.31531 * 204.68520 * 20 19 18 33 33 H 1.09008 * 110.30603 * 82.52090 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.6303 -0.5440 4.4119 10 1 1.3442 -0.9490 5.1122 11 1 2.4878 -2.5653 3.7123 12 16 2.1348 -0.8551 -1.4811 13 8 3.5497 -0.7331 -1.5284 14 8 1.5480 -2.1484 -1.5284 15 6 1.4230 0.1514 -2.8118 16 6 1.8344 -0.4292 -4.1663 17 1 2.9194 -0.5210 -4.2150 18 6 1.3349 0.4884 -5.3029 19 6 0.8808 -0.5385 -6.3779 20 6 0.3505 -1.6873 -5.4836 21 8 1.2294 -1.7148 -4.3478 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7086 1.1614 3.4844 26 1 0.3362 0.1470 -2.7292 27 1 1.7896 1.1747 -2.7291 28 1 0.4948 1.0973 -4.9690 29 1 2.1437 1.1145 -5.6797 30 1 1.7240 -0.8697 -6.9841 31 1 0.0874 -0.1292 -7.0033 32 1 0.3951 -2.6355 -6.0195 33 1 -0.6713 -1.4790 -5.1664 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235077569.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:04 Heat of formation + Delta-G solvation = -127.028900 kcal Electronic energy + Delta-G solvation = -16989.315424 eV Core-core repulsion = 14142.300701 eV Total energy + Delta-G solvation = -2847.014722 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.091 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.44049 -35.85854 -34.87162 -34.24152 -32.36714 -31.66120 -30.58644 -26.46248 -25.32362 -22.06316 -21.93166 -21.12784 -17.79502 -17.06780 -16.72228 -16.22146 -15.53791 -15.28508 -14.82983 -14.35856 -14.08396 -13.55811 -13.21801 -13.00298 -12.27687 -12.09296 -11.86729 -11.74803 -11.51864 -11.25764 -11.10939 -11.01123 -10.93350 -10.91506 -10.86998 -10.54398 -10.39142 -9.88787 -9.57191 -9.41848 -8.88375 -8.53120 -6.24944 -4.38009 1.10080 3.24469 3.29855 3.37000 3.77421 3.94136 4.25359 4.34572 4.46684 4.75810 4.83864 4.97080 5.04898 5.08672 5.20011 5.39812 5.55133 5.58538 5.62297 5.68297 5.80166 5.93490 6.08558 6.37170 6.46602 6.53868 6.99637 7.11029 7.53638 7.57774 7.93471 8.61802 9.29037 10.81342 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.050306 B = 0.006213 C = 0.006053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.456770 B = 4505.624099 C = 4624.876326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.374 4.374 3 H 0.088 0.912 4 C -0.518 4.518 5 H 0.071 0.929 6 C 0.077 3.923 7 N -0.880 5.880 8 Si 0.904 3.096 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.267 1.267 12 S 2.396 3.604 13 O -0.965 6.965 14 O -0.940 6.940 15 C -0.647 4.647 16 C 0.092 3.908 17 H 0.093 0.907 18 C -0.144 4.144 19 C -0.158 4.158 20 C 0.047 3.953 21 O -0.364 6.364 22 H 0.104 0.896 23 H 0.022 0.978 24 H 0.052 0.948 25 H 0.267 0.733 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.586 1.779 -14.020 14.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.489 4.489 3 H 0.106 0.894 4 C -0.557 4.557 5 H 0.089 0.911 6 C -0.128 4.128 7 N -0.516 5.516 8 Si 0.730 3.270 9 H -0.200 1.200 10 H -0.207 1.207 11 H -0.191 1.191 12 S 2.582 3.418 13 O -0.962 6.962 14 O -0.938 6.938 15 C -0.771 4.771 16 C 0.033 3.967 17 H 0.110 0.890 18 C -0.183 4.183 19 C -0.196 4.196 20 C -0.029 4.029 21 O -0.283 6.283 22 H 0.123 0.877 23 H 0.041 0.959 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.151 0.849 27 H 0.151 0.849 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.092 0.964 -13.905 14.094 hybrid contribution -0.315 0.716 0.690 1.043 sum -2.407 1.680 -13.215 13.537 Atomic orbital electron populations 1.21733 0.94129 1.01689 1.02360 1.27348 1.02795 1.08064 1.10668 0.89430 1.20400 1.33333 1.13210 0.88794 0.91139 1.24877 0.94142 0.94692 0.99087 1.69846 1.35295 1.22311 1.24193 0.86373 0.78791 0.80472 0.81328 1.20029 1.20736 1.19138 1.09040 0.76042 0.78018 0.78719 1.93445 1.28618 1.87597 1.86578 1.93470 1.78951 1.35513 1.85832 1.30918 1.14487 1.15912 1.15781 1.22332 0.98100 0.83838 0.92421 0.88954 1.23197 1.02208 0.98185 0.94687 1.23330 1.01806 0.96250 0.98206 1.23414 0.94073 0.99073 0.86360 1.88640 1.60996 1.29803 1.48873 0.87742 0.95881 0.92881 0.92357 0.84910 0.84871 0.89923 0.89676 0.90272 0.89876 0.89519 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.72 37.16 0.32 -2.80 16 2 C -0.37 -9.00 2.69 -27.88 -0.07 -9.07 16 3 H 0.09 2.07 8.14 -51.92 -0.42 1.64 16 4 C -0.52 -14.36 8.58 -34.44 -0.30 -14.66 16 5 H 0.07 1.98 7.71 -52.49 -0.40 1.57 16 6 C 0.08 2.09 5.30 -17.82 -0.09 2.00 16 7 N -0.88 -23.98 11.32 55.43 0.63 -23.35 16 8 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 12 S 2.40 52.92 4.10 -107.50 -0.44 52.48 16 13 O -0.97 -23.72 18.10 -57.83 -1.05 -24.77 16 14 O -0.94 -23.53 17.22 -61.66 -1.06 -24.59 16 15 C -0.65 -10.40 4.91 37.16 0.18 -10.22 16 16 C 0.09 1.39 3.51 -26.01 -0.09 1.30 16 17 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 18 C -0.14 -1.56 6.56 -24.71 -0.16 -1.72 16 19 C -0.16 -1.49 7.16 -24.41 -0.17 -1.67 16 20 C 0.05 0.57 7.78 38.18 0.30 0.87 16 21 O -0.36 -6.19 10.22 -40.47 -0.41 -6.61 16 22 H 0.10 2.55 6.07 -51.93 -0.32 2.23 16 23 H 0.02 0.40 6.56 -51.93 -0.34 0.06 16 24 H 0.05 1.19 8.06 -51.93 -0.42 0.77 16 25 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 26 H 0.13 1.95 6.87 -51.93 -0.36 1.59 16 27 H 0.13 1.76 8.14 -51.92 -0.42 1.34 16 28 H 0.08 0.82 7.85 -51.93 -0.41 0.41 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 LS Contribution 283.59 15.07 4.27 4.27 Total: -1.00 -33.60 283.59 -7.93 -41.53 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -4.76 Total: 0.92 kcal Atomic # 6 Polarization: -35.88 SS G_CDS: -0.09 Total: -35.97 kcal Atomic # 7 Polarization: -23.98 SS G_CDS: 0.63 Total: -23.35 kcal Atomic # 8 Polarization: -53.44 SS G_CDS: -2.52 Total: -55.96 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 52.92 SS G_CDS: -0.44 Total: 52.48 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -33.60 -7.93 -41.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235077569.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.496 kcal (2) G-P(sol) polarization free energy of solvation -33.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds