Wall clock time and date at job start Mon Mar 30 2020 03:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36346 * 125.63944 * 2 1 4 4 C 1.34846 * 108.22213 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.29443 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.46890 * 145.02819 * 5 4 3 7 7 N 1.46902 * 109.46969 * 25.03049 * 5 4 3 8 8 C 1.50694 * 109.47166 * 265.02829 * 5 4 3 9 9 H 1.08000 * 120.00563 * 359.97438 * 8 5 4 10 10 C 1.37885 * 119.99902 * 179.97438 * 8 5 4 11 11 N 1.31518 * 119.99792 * 179.72330 * 10 8 5 12 12 Si 1.86795 * 120.00009 * 0.02562 * 10 8 5 13 13 H 1.48501 * 109.47088 * 89.99795 * 12 10 8 14 14 H 1.48495 * 109.47293 * 209.99997 * 12 10 8 15 15 H 1.48507 * 109.47015 * 329.99955 * 12 10 8 16 16 C 1.40894 * 107.41456 * 0.26641 * 4 3 2 17 17 C 1.50699 * 126.29074 * 179.70367 * 16 4 3 18 18 F 1.39901 * 109.47200 * 179.97438 * 17 16 4 19 19 F 1.39899 * 109.46919 * 299.99237 * 17 16 4 20 20 F 1.39903 * 109.47564 * 59.99342 * 17 16 4 21 21 C 1.34846 * 107.41932 * 359.56328 * 16 4 3 22 22 H 1.09003 * 109.46876 * 89.99877 * 1 2 3 23 23 H 1.08996 * 109.47852 * 209.99842 * 1 2 3 24 24 H 1.09001 * 109.47272 * 330.00535 * 1 2 3 25 25 H 1.08000 * 125.88577 * 0.02562 * 3 2 1 26 26 H 1.00903 * 110.99764 * 299.99906 * 7 5 4 27 27 H 1.00901 * 111.00185 * 63.94725 * 7 5 4 28 28 H 0.97000 * 119.99468 * 179.97438 * 11 10 8 29 29 H 1.08001 * 125.89236 * 180.15607 * 21 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5461 0.7045 -0.0006 5 6 4.7608 1.5964 -0.0013 6 1 5.5523 1.1327 0.5874 7 7 4.4130 2.8978 0.5846 8 6 5.2378 1.7942 -1.4170 9 1 4.7141 1.3210 -2.2345 10 6 6.3430 2.5793 -1.6687 11 7 6.7626 2.7475 -2.9037 12 14 7.2493 3.3971 -0.2548 13 1 8.3154 2.4898 0.2406 14 1 7.8590 4.6665 -0.7259 15 1 6.2938 3.6851 0.8450 16 6 3.5460 -0.7045 -0.0072 17 6 4.7606 -1.5965 -0.0164 18 9 4.3558 -2.9356 -0.0204 19 9 5.5220 -1.3356 -1.1607 20 9 5.5317 -1.3463 1.1238 21 6 2.2594 -1.1081 -0.0006 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3634 0.8900 0.5137 25 1 1.9172 2.1324 0.0004 26 1 3.6806 3.3481 0.0564 27 1 4.1513 2.7995 1.5542 28 1 7.5399 3.3001 -3.0808 29 1 1.9172 -2.1325 -0.0008 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238547957.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:56 Heat of formation + Delta-G solvation = -89.225288 kcal Electronic energy + Delta-G solvation = -18810.289781 eV Core-core repulsion = 15319.906406 eV Total energy + Delta-G solvation = -3490.383375 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.083 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.34132 -46.96431 -46.68298 -41.00699 -35.13320 -32.59183 -31.55199 -28.80585 -27.32488 -26.00724 -24.25060 -21.83498 -20.04040 -19.11038 -17.64924 -17.50877 -17.23815 -16.66164 -15.53397 -15.11597 -14.61908 -13.95929 -13.84518 -13.68343 -13.61258 -13.32082 -13.20277 -12.93499 -12.87450 -12.68481 -12.48953 -12.28030 -11.86770 -11.56350 -10.99712 -10.63273 -10.24055 -9.92397 -9.15749 -8.41234 -8.36066 -7.67691 -7.15471 -5.86073 -3.93784 2.30782 2.95095 3.17336 3.58830 3.62636 3.71279 4.02625 4.59716 4.78333 4.83483 4.87830 5.06204 5.11895 5.28172 5.29302 5.38067 5.47242 5.94037 6.02368 6.33423 6.53616 6.98079 7.13086 7.37494 7.51418 7.79138 8.27135 8.45010 8.82724 9.16552 9.79027 11.24106 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.021688 B = 0.010239 C = 0.008189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.703454 B = 2734.049061 C = 3418.211852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.448 5.448 3 C -0.034 4.034 4 C -0.096 4.096 5 C 0.241 3.759 6 H 0.045 0.955 7 N -0.833 5.833 8 C -0.507 4.507 9 H 0.069 0.931 10 C 0.084 3.916 11 N -0.902 5.902 12 Si 0.862 3.138 13 H -0.297 1.297 14 H -0.306 1.306 15 H -0.192 1.192 16 C -0.256 4.256 17 C 0.537 3.463 18 F -0.197 7.197 19 F -0.160 7.160 20 F -0.184 7.184 21 C 0.037 3.963 22 H 0.072 0.928 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.163 0.837 26 H 0.327 0.673 27 H 0.307 0.693 28 H 0.261 0.739 29 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.585 -6.753 8.186 16.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.123 5.123 3 C -0.161 4.161 4 C -0.103 4.103 5 C 0.131 3.869 6 H 0.063 0.937 7 N -0.361 5.361 8 C -0.545 4.545 9 H 0.087 0.913 10 C -0.119 4.119 11 N -0.540 5.540 12 Si 0.689 3.311 13 H -0.224 1.224 14 H -0.233 1.233 15 H -0.114 1.114 16 C -0.266 4.266 17 C 0.483 3.517 18 F -0.178 7.178 19 F -0.141 7.141 20 F -0.166 7.166 21 C -0.097 4.097 22 H 0.091 0.909 23 H 0.099 0.901 24 H 0.101 0.899 25 H 0.180 0.820 26 H 0.140 0.860 27 H 0.118 0.882 28 H 0.070 0.930 29 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -12.082 -6.430 7.924 15.815 hybrid contribution -0.246 -0.244 0.443 0.562 sum -12.328 -6.673 8.367 16.325 Atomic orbital electron populations 1.21986 0.77222 1.04049 1.03209 1.43825 1.05991 1.05972 1.56513 1.21461 0.89457 0.91163 1.14007 1.20718 0.96371 0.92275 1.00954 1.18119 0.88345 0.83476 0.96918 0.93731 1.60045 1.46985 1.24603 1.04473 1.20668 1.12816 1.31349 0.89706 0.91290 1.24956 0.96296 0.94931 0.95745 1.69966 1.25169 1.38998 1.19855 0.87278 0.79389 0.77866 0.86574 1.22441 1.23323 1.11372 1.19354 0.91507 0.95185 1.20546 1.17526 0.83240 0.76903 0.74068 1.93084 1.90789 1.37513 1.96451 1.93305 1.77314 1.93529 1.49977 1.93148 1.77612 1.94003 1.51826 1.21363 0.89160 0.91788 1.07374 0.90941 0.90076 0.89863 0.81981 0.85982 0.88190 0.93015 0.81529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.65 11.12 59.85 0.67 1.32 15 2 N -0.45 -6.28 3.15 -124.53 -0.39 -6.67 15 3 C -0.03 -0.58 10.69 -16.75 -0.18 -0.75 15 4 C -0.10 -1.96 5.18 -104.82 -0.54 -2.50 15 5 C 0.24 5.67 2.42 -70.02 -0.17 5.50 15 6 H 0.04 1.13 7.01 -51.93 -0.36 0.77 15 7 N -0.83 -17.07 5.59 -6.65 -0.04 -17.11 15 8 C -0.51 -14.46 9.21 -34.44 -0.32 -14.77 15 9 H 0.07 2.19 7.98 -52.49 -0.42 1.77 15 10 C 0.08 2.50 5.47 -17.82 -0.10 2.40 15 11 N -0.90 -28.64 13.96 55.43 0.77 -27.87 15 12 Si 0.86 22.29 26.94 -169.99 -4.58 17.72 15 13 H -0.30 -7.90 7.11 56.52 0.40 -7.50 15 14 H -0.31 -8.08 7.11 56.52 0.40 -7.68 15 15 H -0.19 -4.54 5.17 56.52 0.29 -4.25 15 16 C -0.26 -4.94 5.56 -104.82 -0.58 -5.52 15 17 C 0.54 10.72 3.33 36.01 0.12 10.84 15 18 F -0.20 -3.42 16.77 2.25 0.04 -3.38 15 19 F -0.16 -3.72 17.22 2.25 0.04 -3.68 15 20 F -0.18 -3.74 16.75 2.25 0.04 -3.70 15 21 C 0.04 0.57 10.85 -16.75 -0.18 0.38 15 22 H 0.07 0.56 8.14 -51.93 -0.42 0.14 15 23 H 0.08 0.52 8.14 -51.93 -0.42 0.09 15 24 H 0.08 0.58 8.14 -51.93 -0.42 0.15 15 25 H 0.16 2.36 7.36 -52.49 -0.39 1.98 15 26 H 0.33 6.30 7.98 -39.29 -0.31 5.98 15 27 H 0.31 5.44 9.06 -39.29 -0.36 5.08 15 28 H 0.26 7.85 8.31 -40.82 -0.34 7.51 15 29 H 0.17 2.01 7.94 -52.49 -0.42 1.59 15 LS Contribution 263.65 15.07 3.97 3.97 Total: -1.00 -33.98 263.65 -4.20 -38.18 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -2.77 Total: 5.64 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -1.29 Total: -3.10 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: 0.34 Total: -51.65 kcal Atomic # 9 Polarization: -10.88 SS G_CDS: 0.11 Total: -10.76 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.58 Total: 17.72 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -33.98 -4.20 -38.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238547957.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.044 kcal (2) G-P(sol) polarization free energy of solvation -33.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds